mRNA_H-paniculata_contig5639.13168.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5639.13168.1
Unique NamemRNA_H-paniculata_contig5639.13168.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5639.13168.1 vs. uniprot
Match: A0A6H5KQJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.470e-15
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 EEESPFGSLEADEVEEVFQDSEVPHIEIDVLKVALRYLKGEFTNVSVIA 147
            EEESPFGSL+A E+EEVF+DS VP IEID +KVALRYLKGEFTNVSV A
Sbjct:   71 EEESPFGSLDASELEEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5639.13168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQJ2_9PHAE1.470e-1581.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5639contigH-paniculata_contig5639:11946..13511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionmonocarboxylate permease, putative
Ec32 orthologEc-03_003510.1
Exons2
Model size413
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5639.13168.1prot_H-paniculata_contig5639.13168.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5639 12193..13511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930601.066777-UTR-H-paniculata_contig5639:11945..121921622930601.066777-UTR-H-paniculata_contig5639:11945..12192Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 11946..12192 -
1691481366.7285051-UTR-H-paniculata_contig5639:11945..121921691481366.7285051-UTR-H-paniculata_contig5639:11945..12192Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 11946..12192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930601.0813606-CDS-H-paniculata_contig5639:12192..122501622930601.0813606-CDS-H-paniculata_contig5639:12192..12250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 12193..12250 -
1691481366.7388709-CDS-H-paniculata_contig5639:12192..122501691481366.7388709-CDS-H-paniculata_contig5639:12192..12250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 12193..12250 -
1622930601.0962398-CDS-H-paniculata_contig5639:13404..135111622930601.0962398-CDS-H-paniculata_contig5639:13404..13511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 13405..13511 -
1691481366.7505746-CDS-H-paniculata_contig5639:13404..135111691481366.7505746-CDS-H-paniculata_contig5639:13404..13511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 13405..13511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5639.13168.1

>prot_H-paniculata_contig5639.13168.1 ID=prot_H-paniculata_contig5639.13168.1|Name=mRNA_H-paniculata_contig5639.13168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
EEESPFGSLEADEVEEVFQDSEVPHIEIDVLKVALRYLKGEFTNVSVIAR
TFKT*
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mRNA from alignment at H-paniculata_contig5639:11946..13511-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5639.13168.1 ID=mRNA_H-paniculata_contig5639.13168.1|Name=mRNA_H-paniculata_contig5639.13168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig5639:11946..13511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAGAGCCCGTTCGGTAGCTTGGAGGCAGACGAAGTGGAAGAAGT
ATTCCAGGACAGCGAAGTTCCGCACATAGAAATAGACGTGCTCAAGGTTG
CTCTACGGTAAGAGATTACATACAGTCTAGGTCTTGGGAAGGTTTAGTGG
GTAGTCAGTCAGGCTTGCGTAGTATATATCAGACAACGTGATTCCATTTG
ACACGATCCTACCGTGTAAACTTCGCTAATAATGCAGGTTGTCTATTAAT
AATGCTTCCATAGCTAGTAGCAGAACCCACCTATTTTCAGTTTTTCACAA
ACAACGGAAAACACGCGTGGCTTCGTTCCGTGTGCGAGAAGCTACCAGAC
AGTCACAGCGAACCAGAGGATGTCGTAGCTTATACTCGTGCTAAACGAGG
CCATCCCCCTCATTTTTGTTTTTCCTGCTCTCCGGAAATCGCACATTATG
ACAAGAAGCCTCCAACTAAAGGGGAGGGGGGTGCGGAGCTGTGTACAGGA
TGTTACCTTCATACACTGCGAAGTTTGGAGCTAGCTGTCGAGACTTACGA
ATTTTGGAAAACGGAAAAACGGAAGAAACACTGCTCTAATTAGAACGACT
CCTACTCTCGGTCTACTGCACGCCACGACAGAGGACATGATAATAATAAT
CAATAATAATCAAAAACAAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATCGTGATAAAAAAAATTAAAAAAAACAAGAAGAAGAACACG
ATGCTCCTAGGAGATACTGGTTCTCGAGGGGACAATGCCTGCTCTATGCG
GGTCGGTTCTAATTATTGGGATGTAGCGCGGAGCAAGCACTTGGGTTTTG
TTCTGTCGGAGATGGAGTGACCATCGAGGGTCGGACACAGCTAGAAAGCT
GTTCCGAGAAAGGGAAAAAAATGCTATTGGTCGTTGTGTAGGGGGTCGGG
ATTCATGAACCCCAGGAACGTCAGGAACGTGCTCTCCACAACAATAATAA
CAATAACAATAATGATGATGATAAAAACAACGACAACAGCAACAATAACA
ATAACAACAATAAATCCCACCAAGGTTGAGCGTCCGCTGCCACGTACATA
CTGTCTGTCTGTACTATGGTATATACTGTATTAGGGAGAAATAACAGGAG
GATGGATATCTACCGCTCTTAACCGCATTCAGCAACGTCACGATCACATC
TCTTCGCTCTTGTCCCCTTCTCGTTTTGCCCGATTTTTGCCGTTTGCTCT
GCGGACAAGAGATATCTAAAGGGCGAGTTTACCAACGTCTCCGTCATCGC
AAGAACTTTCAAGACTTGATTGATGACACTCGACACTTGACTCACTTGCA
GTCCACCTACGTATGGGGCTCAAGCTTGGGTCTTATCAAGACTTGACCGC
GGGTGCACACAGCCCAGTCCCCTCGACCGACGTGTGCATCGAATAGACGA
TGAAGGGGTCCAACTGACTGGGTCTTCGACAAACCTCGTCCACCCCTTCG
ACTCTGGGGGACTTGACTCTCTCGAATATGAGTATGAGTAGTGTTGTTTT
AGTGTGTTGCAGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5639:11946..13511-

>mRNA_H-paniculata_contig5639.13168.1 ID=mRNA_H-paniculata_contig5639.13168.1|Name=mRNA_H-paniculata_contig5639.13168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig5639:11946..13511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAGAGCCCGTTCGGTAGCTTGGAGGCAGACGAAGTGGAAGAAGT
ATTCCAGGACAGCGAAGTTCCGCACATAGAAATAGACGTGCTCAAGGTTG
CTCTACGGAAGAAGAGAGCCCGTTCGGTAGCTTGGAGGCAGACGAAGTGG
AAGAAGTATTCCAGGACAGCGAAGTTCCGCACATAGAAATAGACGTGCTC
AAGGTTGCTCTACGATATCTAAAGGGCGAGTTTACCAACGTCTCCGTCAT
CGCAAGAACTTTCAAGACTTGAATATCTAAAGGGCGAGTTTACCAACGTC
TCCGTCATCGCAAGAACTTTCAAGACTTGA
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