prot_H-paniculata_contig5639.13167.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5639.13167.1
Unique Nameprot_H-paniculata_contig5639.13167.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length608
Homology
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 542 bits (1396), Expect = 2.460e-183
Identity = 311/600 (51.83%), Postives = 398/600 (66.33%), Query Frame = 0
Query:    1 MDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLADVTKALLLFSSTKSGH------GLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCLDKMCISVPRGGRECSPHLLVNNGDLVRAFAAGMVSMRKVHEGATTICESQ------STSINSQGGGAEHAQRSEPNQGDVPQ-----KDTRQKQNA---IRGEDVAYGEGSLHRQGNHDASSAVSRYYGDLSREYPGAISMLVDDLMNFLFASESS-----ASGAFKRLPLPIV---CITVQVLSGETIVPLLVHRFVNGMPMLDTNTSSACALVVGV-SKSGWRGLGLKISTSRVHHREGRLRFVLSEAPTPLKVKGGAAWSALANVSAVHVSLSVQSENVPYTNLRKDAIAHKEGYVSATASAVGEGLASLANREQGGFRSAAKAAKEMMEQDFIPLMASSIAAMVEGSGDVSFQRKCLDVLGVGSEYAHQKRLQNVIQHELRQTIRE 571
            +D+CR R  +QD PTV+VVLRR     A +       +G+  ++   ++ LELQV DNGAGL DVTKAL LFSSTKSGH       +    +AG NAGKYGLG+TLSLLYSQ  FGGF+K  + T+ STQ+SFT+C IDL+TG P  VY K+G KP  WA GCGTD+RLLVPG E+ALD+A PRL+  F RMHLL DR AGV+  CEGCLD M + VPRGGR+ SPHLL++N DLV+AFA G+ +M K ++      E+       + S+  Q  G+ H+  +     D PQ     +  RQ Q+      G  +      + R    D+S         L+  +PG +    +D+  F    ++S     A+ A +R P P       T Q   GET VPL VHRF NG+PMLDTNTS+ACALV GV SK  WR LGLKIS++RV  REGRLRFVLSEAPTPLKV GGA WSALA++ AVHV+++  S+ VP+T+LRKDAIAHKEGYVSA  SAV +GL SL+NRE GGFRSAA+AAK+MM++D IPL ASS+A+MV  S + +FQ+KCL  LGVG EY  ++RL ++++ EL++ IR+
Sbjct:   17 IDSCRCRTSEQDAPTVRVVLRRAAAGAAVA-------EGVGEDLDLEEEPLELQVADNGAGLTDVTKALGLFSSTKSGHTPPVAPDVSSSGAAGKNAGKYGLGLTLSLLYSQKHFGGFLKATTATMESTQWSFTKCDIDLETGTPRTVYRKSGLKPDSWARGCGTDMRLLVPGDEEALDFAAPRLKAFFTRMHLLPDRPAGVSFACEGCLDNMSVCVPRGGRDASPHLLLDNQDLVQAFAKGLSAMAKANKAPIGTLETPPXXXATTASLGGQSEGSPHSNDTLDRDTDQPQGQHHLQQQRQSQSCGGQREGSSIGSASQGIQRLEEADSSGXXXXXXSSLAPSFPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAP-PTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQ 608          
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A6H5JUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.510e-12
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 0
Query:    1 MDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLADVTKALLLFSSTKSGH 79
            +D+CR R  +QD PTV+VVLRR       S+      +G+  ++   ++ LELQV DNGAGL DVTKA+ LFSSTKSGH
Sbjct:   37 IDSCRCRASEQDAPTVRVVLRR-------SAAGATVAEGVVEDLDLDEEPLELQVADNGAGLTDVTKAVGLFSSTKSGH 108          
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A7C4PY35_9CREN (Type 2 DNA topoisomerase 6 subunit B n=3 Tax=Thermoprotei TaxID=183924 RepID=A0A7C4PY35_9CREN)

HSP 1 Score: 59.3 bits (142), Expect = 1.480e-5
Identity = 43/135 (31.85%), Postives = 75/135 (55.56%), Query Frame = 0
Query:   37 DDGIEMEIPERDDRLELQVTDNGAGLA--DVTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPG 167
            D GI   IP++ +   + V DNG G+   ++ +A   LL+SS    + L Q        G +G+G+ +++LYSQ+T G  ++V+S+T+NS++    R  ID+K  +P I +  +  K + W    GT ++L + G
Sbjct:   61 DSGI---IPDKPEVYLISVEDNGIGIPPDNIPQAFAQLLYSSK---YVLRQ------TRGMFGIGVKMAVLYSQITTGKPVEVLSSTINSSRIYMFRLSIDIKNNRPVIHHKASFKKSSEWH---GTIVKLFIEG 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMM1_ECTSI2.460e-18351.83Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
A0A6H5JUR8_9PHAE2.510e-1251.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C4PY35_9CREN1.480e-531.85Type 2 DNA topoisomerase 6 subunit B n=3 Tax=Therm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 28..192
e-value: 3.6E-14
score: 54.8
IPR036890Histidine kinase/HSP90-like ATPase superfamilySUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 37..128
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 358..568
e-value: 4.1E-7
score: 31.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5639contigH-paniculata_contig5639:1804..9225 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5639.13167.1mRNA_H-paniculata_contig5639.13167.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5639 1547..9985 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5639.13167.1 ID=prot_H-paniculata_contig5639.13167.1|Name=mRNA_H-paniculata_contig5639.13167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=608bp
MDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDR
LELQVTDNGAGLADVTKALLLFSSTKSGHGLEQGTSAGPNAGKYGLGMTL
SLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKP
AHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLEC
EGCLDKMCISVPRGGRECSPHLLVNNGDLVRAFAAGMVSMRKVHEGATTI
CESQSTSINSQGGGAEHAQRSEPNQGDVPQKDTRQKQNAIRGEDVAYGEG
SLHRQGNHDASSAVSRYYGDLSREYPGAISMLVDDLMNFLFASESSASGA
FKRLPLPIVCITVQVLSGETIVPLLVHRFVNGMPMLDTNTSSACALVVGV
SKSGWRGLGLKISTSRVHHREGRLRFVLSEAPTPLKVKGGAAWSALANVS
AVHVSLSVQSENVPYTNLRKDAIAHKEGYVSATASAVGEGLASLANREQG
GFRSAAKAAKEMMEQDFIPLMASSIAAMVEGSGDVSFQRKCLDVLGVGSE
YAHQKRLQNVIQHELRQTIREMEENRARGKALAAERRAIETHEEREMDSR
KRPSSQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036890HATPase_C_sf
IPR014721Ribosomal_S5_D2-typ_fold_subgr