mRNA_H-paniculata_contig5636.13164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5636.13164.1
Unique NamemRNA_H-paniculata_contig5636.13164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A6H5KPD3_9PHAE (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPD3_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 2.970e-119
Identity = 189/250 (75.60%), Postives = 218/250 (87.20%), Query Frame = 1 
Query:  295 IDPKFRSPVEDPWATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLFSEVTLNKIIIVFGFVFMALGTVVTLKDAGAH 1044
            ID +FRSPV  PW  V LWRVGPGLVTLMNM+CVAFM HYNGVKYYEELE+R+ +KY +TIG+AM +S GVF+TMMLFGFRTFG AAQ L+LNNYHRT DP+ASLARLATG SILCG+PLMFAALK SFFNAA+EISEKFGD G K+A RF  DE LRT CI+SL+AV+TSIAC +SEEDVA I+GLIGA+LGS ANYIIPAVLN+SLL+R+G+  GL SE+TLNK II+FG VFM +GT+VTLK+AGAH
Sbjct:  314 IDARFRSPVPSPWGVVKLWRVGPGLVTLMNMSCVAFMCHYNGVKYYEELEDRTEKKYAVTIGSAMGISFGVFTTMMLFGFRTFGAAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTGCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGANGGLVSEITLNKAIILFGAVFMVMGTMVTLKEAGAH 563
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A835YIC2_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIC2_9STRA)

HSP 1 Score: 322 bits (826), Expect = 3.710e-98
Identity = 165/252 (65.48%), Postives = 196/252 (77.78%), Query Frame = 1 
Query:  289 QAIDPKFRSPVEDPWATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLFSEVTLNKIIIVFGFVFMALGTVVTLKDAGAH 1044
            + ID K+RSP  DPWA+V LWRVGPG VTLMNMACVAFMAHYNGVKYYEELE+R+VR+YT  IG  +  S+ VF  MMLFGFRTFG AAQ L+LNNYHR+ADP+  +AR ATGC+I+CGYP+MF+ALK S  NA  EI  KFG + R L  RFL D  LRT+  + LLAVI +IAC++SEEDVA +VGLIGALLGS AN+IIPAVLNL L +R+G K G FSE  LN++++V GFVFM +GT   L DA  H
Sbjct:  182 EGIDLKYRSPQADPWASVGLWRVGPGTVTLMNMACVAFMAHYNGVKYYEELEHRTVRRYTKAIGGGVAASMCVFVAMMLFGFRTFGTAAQPLLLNNYHRSADPLVGVARFATGCAIVCGYPIMFSALKTSSTNAVHEILNKFGAT-RALGKRFLTDANLRTAWAVGLLAVIIAIACDKSEEDVADVVGLIGALLGSGANFIIPAVLNLQLFRRLGRKGGAFSETGLNRLLVVAGFVFMYIGTKSVLGDASKH 432
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A4D9DBF3_9STRA (Aa_trans domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBF3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.320e-51
Identity = 113/251 (45.02%), Postives = 157/251 (62.55%), Query Frame = 1 
Query:  295 IDPKFRSPVEDPWATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILS-----LLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLFSEVTLNKIIIVFGFVFMALGTVVTLKD 1032
            ID  +R       A   L+R+GPG ++LMNMACVAF  HYNG+ YY EL++R++ +Y+  +G     S  VF+ MM+FGF TFG AAQ L+LNNYHRT D +A+ +RLAT  SI+CG+PLMFA LK  FF+    +     +S R+L+ R      L++  +++     LLA I  IAC  +EEDV  ++G+IGA+LG++  YIIPA+LN  LL R+        E   N+ +IV G VF  LGT + + D
Sbjct:  230 IDAVYRPQTPSYSAFEKLFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRNLSRYSGAVGLGFLASFAVFALMMVFGFGTFGFAAQPLLLNNYHRTQDALATGSRLATAFSIMCGFPLMFAGLKTGFFS----LWHSNVESARRLSPRLRV--ALKSDTVIATVSSLLLAAICGIACLCTEEDVGFVIGVIGAVLGTSVVYIIPALLNTKLLARVKDTAVAKPEKRFNQGLIVIGVVFALLGTYMAIDD 474
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A7S3XLX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLX7_HETAK)

HSP 1 Score: 192 bits (487), Expect = 9.100e-49
Identity = 108/200 (54.00%), Postives = 134/200 (67.00%), Query Frame = 1 
Query:  349 WRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNA-AAEISEKFGDSGRKLANRFLADEGLRTSCILSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRG 945
            +  GPG +TL+ MACVAF+ HYNGV YY EL  R+VR Y     T M V+LGVF  MM FGFRTFG AAQAL+LNNYH+T DP+A+ AR ATG +ILCGYPLMFA  KA  F A AA +    G  G  L  R  AD   +    ++ L  IT++A   +EEDV  ++GLIGALLGS A +I+PAV+NL + K +  +RG
Sbjct:  347 FEAGPGTLTLLTMACVAFLCHYNGVGYYVELNRRTVRNYAKVATTGMGVALGVFLLMMTFGFRTFGYAAQALLLNNYHQTEDPLATGARAATGFAILCGYPLMFAGFKAGAFPALAAALGRVRGTQG--LRARLRADPKTQNLVSVAALGSITAVAAQCTEEDVGAVIGLIGALLGSFACFIMPAVVNLRVNKLLVRQRG 544
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: W7TM90_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM90_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.890e-48
Identity = 113/251 (45.02%), Postives = 157/251 (62.55%), Query Frame = 1 
Query:  295 IDPKFRSPVEDPWATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILS-----LLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLFSEVTLNKIIIVFGFVFMALGTVVTLKD 1032
            ID  +R       A   L+R+GPG ++LMNMACVAF  HYNG+ YY EL++R++ +Y+  +G     S  VF+ MM+FGF TFG AAQ L+LNNYHRT D +A+ +RLAT  SI+CG+PLMFA LK  FF+    +     +S R+L+ R      L++  +++     LLA I  IAC  +EEDV  ++G+IGA+LG++  YIIPA+LN  LL R+        E   N+ +IV G VF  LGT + + D
Sbjct: 1329 IDAVYRPQTPSYSAFEKLFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRNLSRYSGAVGLGFLASFSVFALMMVFGFGTFGFAAQPLLLNNYHRTQDALATGSRLATAFSIMCGFPLMFAGLKTGFFS----LWHSNVESARRLSPRLRV--ALKSDTVIATVSSLLLAAICGIACLCTEEDVGFVIGVIGAVLGTSVVYIIPALLNTKLLARVKDTGVAKPEKRFNQGLIVIGVVFALLGTYMAIDD 1573
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A7S1UC63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC63_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.180e-39
Identity = 95/200 (47.50%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:  334 ATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGL--RTSCILSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKR 927
            A ++  R+G G VTL NMACVAFMAHYNG+KYYEELE+R+ R+Y   +GTAM     +F   ML G  TFG ++Q L+LNNY    D +A+ ARLATG +IL G+PLMF ALK S  +               L +R+  D G        +++LA + +IA   +EE++ +++GLIGA+LGSA  Y+IPAVLNL L +R
Sbjct:  202 AALDPLRIGAGTVTLANMACVAFMAHYNGIKYYEELEDRTPRRYAGVMGTAMGSVGLIFVLFMLLGHATFGSSSQTLLLNNYAGD-DTLAAFARLATGFAILSGFPLMFFALKTSVSS---------------LLHRYRVDLGADGMDKLTVAMLASVAAIATQTTEENLGIVIGLIGAVLGSALGYVIPAVLNLKLAQR 385
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BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: B7FRQ8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRQ8_PHATC)

HSP 1 Score: 160 bits (405), Expect = 4.170e-38
Identity = 106/264 (40.15%), Postives = 147/264 (55.68%), Query Frame = 1 
Query:  268 TSLPAAPQAIDPKFRSPVEDPWATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLG----VFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCI-LSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSK----RGLF--SEVTLNKIIIVFGFVFMALGTVVTL 1026
            T    AP A  P  +S V    A +     G GL TLMNM CVA+  HYN VKYY EL++R+V     T+   M   +G    VF  MM+ GF TFG  +QAL+LNNYH + D MA+ ARL TG +I+ GY LMFA LKA+ F+              KL      +  L+ + I   +L+ I   AC  +E ++A ++G++G++ GS   YI PA++N+SLL +   K      LF   EV  NK++I+FG +F  LGT ++L
Sbjct:  276 TKFQPAPLANFPHTQSGVLGYLADIPSMYAGKGLFTLMNMCCVAYACHYNAVKYYMELKDRTVP----TLKGVMAAGIGGTGLVFWCMMMLGFATFGKHSQALLLNNYHSSVDLMATAARLFTGIAIISGYALMFAGLKAALFSLL------------KLDQPNTTNRDLKQNTISFGILSAIAVAACFVTEHELATVIGIVGSVFGSVVIYIFPAIVNISLLAKKNKKGNRIAALFFPGEVLFNKLMILFGAMFAVLGTWISL 523
[Close]
BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A1Z5K500_FISSO (Aa_trans domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K500_FISSO)

HSP 1 Score: 157 bits (397), Expect = 2.770e-37
Identity = 94/242 (38.84%), Postives = 142/242 (58.68%), Query Frame = 1 
Query:  340 VNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRG------LFS-EVTLNKIIIVFGFVFMALGTVVTLKDAGAH 1044
            + L++   GL+ LMNM CVA+  HYN VKY+ EL+NR+V      +   +  +  VF  MM+ G+ TFG  +QAL+LN+YH + D MA+ AR  TG +I+ GY LMFA LKA+ F+    + EK     +  +              +SLL +I + AC  +E ++A ++G++G++ GS   Y+ PA++N  LL  M  K+G      LFS E+  NK+++VFG VF  LGT ++L + G H
Sbjct:  272 LKLFQAKRGLLVLMNMCCVAYACHYNSVKYFMELKNRTVSNLQKVMAFGLGGTALVFFCMMILGYATFGSNSQALLLNHYHGSQDVMATTARAFTGLAIISGYALMFAGLKAALFSL---LKEKRPQQQKAWS--------------VSLLTLIATAACFVTEAELATVIGIVGSVFGSVVIYMFPAIVNFKLLN-MKDKKGKNIVQPLFSGEMAFNKLMVVFGIVFAILGTWISLAEGGGH 495
[Close]
BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A482SY67_9ARCH (Aa_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY67_9ARCH)

HSP 1 Score: 154 bits (390), Expect = 5.240e-36
Identity = 110/299 (36.79%), Postives = 157/299 (52.51%), Query Frame = 1 
Query:  202 SYYVIFHKLNKRRGN-VPGAFVWTSLPAAPQAIDPKFRSPVEDPWATVNLWRVGPGLVTLMNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNA-------AAEISEKFGDSGRKLANRFLADEG---LRTSCILSLLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLF---SEVTLNKIIIVFGFVFMALGTVVTLKDAGAHGGGH 1056
            +Y V+F+      G+ +PG+ +   +P       P  R P         L+    GL+TL N+ CVAF+AHYN + YY+EL N+ + +Y   +     ++   F  MML G++ FG AA  LILNN+    D  A+LARLA G SI   YPLMFA LK++ FN         A      GD+    +N     +    ++TS I++ LA ITSIA    EEDV+V++G++G++LG    Y +PA L L  ++    K GL    +E   N  + V G VF  LG  VT++ A AH G H
Sbjct:  265 AYTVLFYVYRLSTGSYLPGSELLKYVPTKLHPSHPTPRFP---------LFNTNTGLLTLANLLCVAFLAHYNSITYYKEL-NQGLPQYRKAVIVGFGIAALTFLIMMLVGYQLFGKAALPLILNNFPFKEDKFATLARLAIGLSITFAYPLMFAGLKSAMFNLLDTFYFKGAASQSVNGDNPLPSSNADKVSKNKKFVQTSAIITALASITSIAVKCGEEDVSVVLGIVGSVLGCVVAYCLPASLQLKHMRNR-HKAGLSVNRAEAVSNHALGVLGAVFAVLGAWVTVQSASAHSGHH 552
[Close]
BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Match: A0A7S3YMY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMY5_HETAK)

HSP 1 Score: 131 bits (329), Expect = 1.500e-31
Identity = 82/174 (47.13%), Postives = 112/174 (64.37%), Query Frame = 1 
Query:  517 MMLFGFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKASFFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILS--LLAVITSIACNQSEEDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLF---SEVTLNKIIIVFGFVFMALGTVVT 1023
            MM FGF+TFG  AQ L+LNNYH+TAD  AS AR A G +I+CGYPLMF A K +FF   + +S+     G+K+  +  A        ++S  +LAVIT+IAC  SE+DV  ++G++GALLG+ A YI+PA++NL L     SK+ L     E+  NK+++  G VF  LGT VT
Sbjct:    1 MMGFGFKTFGLNAQPLLLNNYHKTADFGASWARAAVGLAIVCGYPLMFMACKTAFFALLSHVSD-----GKKVTPKGQA--------VISTGVLAVITAIACKCSEKDVGFVIGIVGALLGAFACYIMPALINLGL----ASKQALDLSKGEIIFNKLLLALGVVFAILGTAVT 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5636.13164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPD3_9PHAE2.970e-11975.60Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YIC2_9STRA3.710e-9865.48Transmembrane amino acid transporter protein-domai... [more]
A0A4D9DBF3_9STRA2.320e-5145.02Aa_trans domain-containing protein n=1 Tax=Nannoch... [more]
A0A7S3XLX7_HETAK9.100e-4954.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TM90_9STRA2.890e-4845.02Pentatricopeptide repeat containing protein n=1 Ta... [more]
A0A7S1UC63_9STRA1.180e-3947.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
B7FRQ8_PHATC4.170e-3840.15Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K500_FISSO2.770e-3738.84Aa_trans domain-containing protein n=2 Tax=Fistuli... [more]
A0A482SY67_9ARCH5.240e-3636.79Aa_trans domain-containing protein n=1 Tax=archaeo... [more]
A0A7S3YMY5_HETAK1.500e-3147.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5636contigH-paniculata_contig5636:339..8246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.3
Seed ortholog evalue1.2e-89
Seed eggNOG ortholog2880.D8LPT6
KEGG koko:K13576
KEGG TC2.A.18.6.2,2.A.18.6.3
KEGG Pathwayko04724,ko04727,ko04964,map04724,map04727,map04964
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
Ec32 ortholog descriptionAmino acid transporter, transmembrane
Ec32 orthologEc-18_002410.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons5
Model size2583
Cds size702
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.2551718-UTR-H-paniculata_contig5636:338..7161622930600.2551718-UTR-H-paniculata_contig5636:338..716Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5636 339..716 +
1691481366.3803117-UTR-H-paniculata_contig5636:338..7161691481366.3803117-UTR-H-paniculata_contig5636:338..716Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5636 339..716 +
1622930600.3578348-UTR-H-paniculata_contig5636:6683..68461622930600.3578348-UTR-H-paniculata_contig5636:6683..6846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5636 6684..6846 +
1691481366.4307249-UTR-H-paniculata_contig5636:6683..68461691481366.4307249-UTR-H-paniculata_contig5636:6683..6846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5636 6684..6846 +
1622930600.3979647-UTR-H-paniculata_contig5636:6906..82461622930600.3979647-UTR-H-paniculata_contig5636:6906..8246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5636 6907..8246 +
1691481366.4393182-UTR-H-paniculata_contig5636:6906..82461691481366.4393182-UTR-H-paniculata_contig5636:6906..8246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5636 6907..8246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.2673116-CDS-H-paniculata_contig5636:716..8171622930600.2673116-CDS-H-paniculata_contig5636:716..817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 717..817 +
1691481366.3950598-CDS-H-paniculata_contig5636:716..8171691481366.3950598-CDS-H-paniculata_contig5636:716..817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 717..817 +
1622930600.281767-CDS-H-paniculata_contig5636:3208..35011622930600.281767-CDS-H-paniculata_contig5636:3208..3501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 3209..3501 +
1691481366.4062018-CDS-H-paniculata_contig5636:3208..35011691481366.4062018-CDS-H-paniculata_contig5636:3208..3501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 3209..3501 +
1622930600.3004363-CDS-H-paniculata_contig5636:4721..48201622930600.3004363-CDS-H-paniculata_contig5636:4721..4820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 4722..4820 +
1691481366.4143462-CDS-H-paniculata_contig5636:4721..48201691481366.4143462-CDS-H-paniculata_contig5636:4721..4820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 4722..4820 +
1622930600.3316793-CDS-H-paniculata_contig5636:6474..66831622930600.3316793-CDS-H-paniculata_contig5636:6474..6683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 6475..6683 +
1691481366.4227-CDS-H-paniculata_contig5636:6474..66831691481366.4227-CDS-H-paniculata_contig5636:6474..6683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5636 6475..6683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5636.13164.1prot_H-paniculata_contig5636.13164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5636 717..6683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5636.13164.1

>prot_H-paniculata_contig5636.13164.1 ID=prot_H-paniculata_contig5636.13164.1|Name=mRNA_H-paniculata_contig5636.13164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MNMACVAFMAHYNGVKYYEELENRSVRKYTITIGTAMTVSLGVFSTMMLF
GFRTFGPAAQALILNNYHRTADPMASLARLATGCSILCGYPLMFAALKAS
FFNAAAEISEKFGDSGRKLANRFLADEGLRTSCILSLLAVITSIACNQSE
EDVAVIVGLIGALLGSAANYIIPAVLNLSLLKRMGSKRGLFSEVTLNKII
IVFGFVFMALGTVVTLKDAGAHGGGHEAGGSVM*
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mRNA from alignment at H-paniculata_contig5636:339..8246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5636.13164.1 ID=mRNA_H-paniculata_contig5636.13164.1|Name=mRNA_H-paniculata_contig5636.13164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7908bp|location=Sequence derived from alignment at H-paniculata_contig5636:339..8246+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGACATAACCACACGCATCAATTGCCAAGGACAGCGTTGTCAGGAGTAC
GGTGTCTACAGTGTGAGAATACGGTTTGTAGTAATTAGCACCGTAGAGTA
TTTGTTGAGCGAGTCAAACGTACAAGTAGGTATGCAACAGTTTAGTGTAC
TGTAGCAAACATGACAGTGACCATAAAAACAAATCGGAGGTGTGCTAAGC
ATCTTACTATGTTATTTTCCACAAACTGAACAAACGTAGGGGTAATGTTC
CCGGCGCTTTTGTCTGGACATCACTTCCCGCGGCACCGCAGGCGATCGAT
CCTAAGTTTCGCAGCCCAGTGGAGGACCCGTGGGCTACGGTGAACCTGTG
GCGAGTGGGTCCCGGCCTTGTGACCTTGATGAACATGGCGTGCGTGGCGT
TCATGGCCCACTACAATGGAGTCAAGTATTACGAGGAACTCGAGAATCGG
TCCGTCAGAAAGTACACCATCACCATCGGGTATGTTTTACTGTATATATG
GTTTGCGCTGTCTGTTTATCTGTCTGTTTGTCGTCTCTGTTTGTATGATG
TTGTTCGTTACTTTGAAGCACACGGACGGGCGCGGGCAGGTACAACCCTC
TCTGTTGTTCATTAGTTTAGGTTACCGAGGTCTAATAGTTCGTTCTTCTG
TGCCATAAGTGAATATAGTTATGGTTATTTACTAGAAAAACGCGCTCCAA
GTGTGTCCGTTTTTTTTTTTTTTTTTTTTTGTAACAATCATAATCGAATT
AAATAATATGTTTCGTGGGGGGTTGAACCTTGACATGTCTAGAAGAGATT
AGCGAAAAGTCCACCGGGTGCCCGTGCGATGCGATGCGATGCGAAAAAAA
AAAAAGGTCGATTGACAAAATGGGGCCATATCTTGTGCCGATTTTTTTTT
TTTTCCAATGGAAAGACGGGAAAATCTGAGGGGAAAAAATGGAGCCAAAA
ATGGTTGAAACGAGCCCAACCTTGAGCGGCCATTAATCCTGATATTAAAA
TTCGGAATAACGTTTGGAGTAGCTCATATGAGTCTATCAGAGTTACGCTT
TTTCGTCGATAACGATAACACTCGGTGAGCCTCTTGTGTCGAGGGCTGAG
ATACAATCCGCCAAGCACAATTACCCCTATTCATGGGACAGAAGGAATCA
TCTGTAGAGAAAGCAGCCCACCTCTGAGCTACACGATCAGCGGTGACTGT
GCAATAGTTAATCGTGAGTTCGAATCCCGCCGGATGCAGTTTTTTTTTTA
ATTGTGCACTTTTCGATATGGAAAGGTGCGGCACTTCCTAGGGAGGAAAA
ACGCCGGGAAAAAAAAATGGACGTGTGTGAAGGATGGAAGCGTCGTAGAG
AGAGATAAAAGAAAAACTCGTAAATAAATTGACCCGTCTATTGAACTAAA
CACGAATCAGAAAGCGAGGTGAGCAGTGGCAAGGGGAGTCACCCTCCTCG
GAGCGTAAATGGTCGGTTGTTCGGATGTGGCGATAAACGTTTGTACAGAA
AGCAGCCCAGTGGTAGACTGCTTTCTGTACATGTCGTGTTATTCGTCATT
CTGACGCTTGGGCGTAGGCACAACCTGTTGACTACATATATTGCCCAGCA
GACCAGCAGGTCTATTAGATGTTGTAGGTAGATGAGGTTACAAGGGACAA
TAAAGCGAGGAAACTGAAATGTACATGCGGACGGTCGGTGCAGAGACAGC
CCACGGTATAAGTACTCCAAATATTATAATAGCATCCTCCAAGTAAACGC
ATGAGCCTCCCACGTCATCATATGATACTGTCACATTTGCATATAGTGAC
AGTATATACCCCGAGATCATGTATATCGTACCTCGTTTTTATTAACGCCT
TCAGAGCGCAAGTTTTCGAAGAAAAATACCAAGTATAGATCGCCTGCACG
AATCAGCCATATATGTTCTTTTCAACCGAAGACTATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTATGTGTGTATGTGTGTGTTTATATGGCGCCGCGTCA
ACTGCCTGCTCTTTTTATGAAGGGATGGATCCAAACCTTTTAAATGACAT
TCATGCATCCACACATCCCCGAAGGTGCACAATACACGATTTGGAATGGC
CTTATGGTACTTTTCAGCGGGGGAGGCCATTTACCATGTGTCCTCGAGAA
GACGGAGGTTCGTCCCTATTAAAGTGATTTCCAACGCCTCCAATACGCTC
TTTCCTACATTGCCAAATGTGTCTCAAAATGTGTAAGACATATATATGTA
TTTATGTATGTATGTATGTATGTATGTGTGTATACGTGTGTGTGTGTGTG
TGTGTATGTGTGTTGCCTATTTAGCAAACTTTGAAATATATCGACTAGAA
TTATCTCCTTGGCAAAAAAACATCTAATTTTGCTGAAAAGCGTAAACAGC
TGGTACCCCCCCCCCCCCCCCCGCCGTAGCCCGACTAACTATTATGATTT
AAAGATGCATGCATTATTGCAGAACTTCTTAGATGTTCAACGAGCGCCAC
TTCGAAAAGCGGCTGAAAAAATATATTGACCTGAAACCTGTCCAATAGTA
TGCATGCATCCAAACACATCCCCATCGCTGCACATTGCACAGTTAGGAAT
GACGGTACTGTTTTAAGGAGGAAATACACACACACACACACACACACACA
CACACACACACACACACACACACATCTGTATATATATATATACATATATA
TATATATATATATTGCCTTTTTAGCCGCTCGGCAAAGTGGCTCAGACTTT
AAAAAAAGCGTGCTAAAAAAAATAAATGAAATGGTCTAATAGCTACAGCA
TGCAAAACATGATAATCCTCACTCCTCTCCCATGTTGCCCATGTCCTCGG
TCCCTCTCCGTCTATCTCAGCACGGCCATGACGGTTTCCCTGGGCGTATT
CAGCACGATGATGCTGTTCGGCTTCCGTACATTCGGCCCCGCCGCCCAGG
CTCTCATCCTCAATAATTACCACCGTACGGCGGACCCTATGGCTAGCCTC
GCCCGCCTGGCCACGGGTTGCTCGATCTTGTGTGGGTACCCCCTCATGTT
CGCCGCTCTCAAGGCTTCGTTCTTCAACGCTGCGGCCGAGATATCGGAGA
AGTTTGGCGATTCGGGACGGAAGTTGGCGAACCGGTTTTTGGCGGACGAA
GGGCTCCGCACGAGTGAGTGTATAATGTTGTTGTTGTTGTTGTTGTCAGC
AGTGTAGGCGCTCGTGTATACAGGTTGTGTGTGTGTGTGTATGGGTGTGT
CGCCAATAAGGGGCGTCTTTGTTGTTCTAGTTTATTGCATGAATCCGAAA
TACTGCAAAAAGAGTGTTGTGACTCTGTAGTCACATTTCGTACTAGTGTA
CCTGATTTGTAGACTAATTCGCGGGTATACATACCGGTTACGTATCCGGT
ATCATAGTACCACGACGTGCTCGGTACCATTTCGGGATCACGCCAAAATG
CTGGGTATATACCAGTATCGCCAAGTATGTACCCCCATTAATACTGAGTA
CATCTCCAGTAAATACTTGCTGACAAATTGCCGGAATGACTCATTTTATC
CCCTGTATAAACTCCGAAAATACGGAGTACGTCTACAGTGTCATCAGTAC
AAATATCGAAAATACTGGGTATCTCCCAATACCACAAAATAGCTTAACCC
AAAATGCTGGTACTCTGTGCTGTGTTATGCTGTGACGACCTTTGTAAACT
ATTCTATTTTTCATAGATGCTTCAGTATTATCATATGTCATTTTTCAGCC
CCCCCCCGCTTTTTTTTTTTTTTACTCCCCCCCCCCCCCCCCCGACCCCG
CGTGTCCGAAATTCACGTTGTGTGAGATAGGGAAAGTTGAACTATTACGG
AGGAACATAATAATCAGGAGCATTTTTTGGGGGTTTTTCGGAAACTGTTT
TTTTTTTTTTTTCCCGTTGGTCTACAGATTTTCGCTTCTAGCAGAAAACA
AAATACACTCTAAAAACACTTGCACAGGTTAGCAGCAACCGATTGGTGCA
TATCGTATTGGATGAGTTACACCTCAAAATGTCAATTTTCTATTTTGCTC
CTGATTATTATGTTCCTCCGTAATATGCGATTGATAGGGAATATAATCCT
TGGATTTTCGAAAAGAAGTCTCCAATGGTTGTAGGAGAAAACAGTTGGCC
TGAAAAAGGAAGACGAGGGTTGAGGTAGATGCCGTGGGTAAAAAAAAAAA
AATGAGCCGCAATTGGCAACGTACGAAAGAGCGATTGACTATCATCGGAC
AATCGTTTCTGATGGGTGAACGGTTAAATAACTACGATATTTGAAACATG
AGTATCTCCCCCCCCGCGTGTCGTTGTCCTGGTGCTGCCTCGCGTTTCCT
CTTTTGTCACTGCGATCGTTGGACAACATATAGGCTGCATCTTGTCCCTC
CTCGCAGTGATCACGAGCATTGCTTGCAACCAGTCGGAAGAGGATGTAGC
AGTTATCGTGGGTCTTATCGGTGCCCTCTTGGGTGAGTTGGTTTTACGAT
ACAGTAGGTGGGGCGCAGAGCAGAGCCCAGTCAGTGGCCCCGTCTATCGT
AATAAATAAGACCCCGTCCCCGCCCCCCGCCTAATTTTGTTGTTTTGTTA
GAGGTATTAGTCATCACTCAGCTTGTATAAAATCGCCTTGATCTCCTGTT
TTTATTGATTGTTACGGGCAGGCATGTGCTCAAATGGTTTTGTACTTGTG
TATGTTTAAAACCGTATCATCATGCTATTGTCGATGCCGTGTGTCCTGTA
GCGGAAGTTTTCCTTGGCAAGGCTCGTACCGCCAATATATGCCTGCTGTC
GCTGTTTCTTGGTGGTGATTAATTAATGTGTAGGATTTCTGCTTCTTGTG
TCAGTTCGCTGTTGATATATATTTTTTGCTCTTGTATAAGCAGCGGGGAA
ATTTCTGAGCTCCATCACATCATATCATGGATTCTGGATTTTTTTTTTTT
TTATCAGAACTTTCGCACACCAATCGAACACTGAATACCACTGTGTAATT
TATTTTCTGCAGAGAGCAGCATACGGGGTATTATTAGTGATGCACGAGAA
GAAAATGTGTCGTAAGCGGTGAGCGAACAAGGCACTCCTTCGTGTGTCGC
ACTCCTGGACAAGCGGCTCCCAATGCTTGACACTAGCACCGGCCTGCAGT
AGCAACTCTATGCTGATTTTAGGTCTCTCCTTTTGGAGTGATATTTATAC
GCGGCAAGTCCCCCCCCCCCATCCCCTCGCCTTATATCATTTGGTTACCC
GAGACGTCTCAAAATACTCCATGGCAAAATCTGGTCGGCGTAGCAAGGCA
AGGATGATGAGTAGTAGCTTGTACCACCAGCCTTGTGAAACGCAGCCTAG
CCGGCGAAAACCTGGCAAGCTCCGTCCCGGCATTGTAGGCATGCGAGGTC
AATGGTCGGAAGACTACGGCATACGTTTCCATAAGTACCCCCCCCCCCCC
ACCCGCCCTTATTGGTCTTGATCTAATTTTGCCGATGGGTGTAAAACAAT
TCAAGTTTGAAAGTCAGCTCTATAACCTACCTTAATAAAGGTACAGCGGA
GTTATAGTTCAAGTGACTGTGGCAGAGTTGACTCAGGAATGATTGTTTTT
CAGGGTATCTCTAGTTCATGTGACTTTTTCATGTTATACCTACAGTACAC
ACGGGAGTGGTGAAGTGATGGTTCCTTTTACGAAGGTTGCCGTAGGCCAT
GTCGTGCGTCGCCAACGAGGCGCGTGAAGTACTGGTACTACTTGGTCATG
ATAGGGTCAGAATTTTATCTAGTGTGAATGGGATCCTTTCGGTCCACCAA
GTAGGATACGACCCAAATACCGGTCATGCCCAGTCGAAATTCAATTGTCT
CGGCGGGCATGCGTGTGTGCTTTGTTGTAGATGAGCTGTAGCAGTGGCGA
TAGTCCCCCTCCCCCCCCCCCATCTCACAATGTCCATCTCTTGTTGTATC
TTCATGGCATTGTGAGGTATTGGTCATACAAACATATCAAATTGTTGGTG
TTTATTGCCTGTTCATCATGTATATTGATTTTTGCCACGGGGCATTTATC
ATATTGTCCGAGGTGTTGTAATGTTAACATACCCCCCCCCCCCCGCAATT
CCCCCTTTCTCCGTTCCTCCCCCCCCCCACCCGAAGGTTCCGCCGCGAAT
TATATCATACCCGCCGTGCTCAATCTCAGCCTTCTCAAGCGCATGGGGAG
CAAGCGCGGGCTGTTCTCGGAGGTTACCCTGAACAAAATCATTATCGTGT
TCGGCTTCGTGTTCATGGCCCTGGGCACCGTGGTGACTCTGAAAGATGCC
GGCGCGCACGGTGGGGGGCACGAGGCTGGCGGGTCCGTTATGTAAAAAAA
ACAAATGGAAATCGAAAATCAAAAATTTTAAAATGAAGAAAAATGAAGAA
AAAATAATGACAAGAGGCAAATCCAAAGTCTAGCCCTCTTATTTTTCTTT
TTCTTTTTTGCTTTGTTTTGTTTGCGCATGGTGAGTATTTCTGCTAGGAG
CTCGTTTCAGATGACCAGTTTTCGGTGCACAGGGTGTGTGTAAGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGACGG
GTCTGTTGTCAGTCCTGGTCCGGTTCCATTGTTTGGTGAGACTTGTGTTT
TTTGGTCAATCCGGTCCGGGTCCGGGCCGGTCTCTTTCTGACGTTTCTAG
CGTCGATCTGGTCCTGGTTTCGTGTTTCGCTTTTGTTGAATTTCTGTGCC
AGTCAGGTGCGAGTTGTAGCCTTGAAGAATACACACACACACATACACAC
ACATCCACATACACAAAGAGAGAGAGAGAGAGAGAACGGTAAACGTGAAA
GCAGTTTTCAACCTCAACTTGCCGAAAGAGTCCTCTGCAGCGTTTACTTT
CGGGCGTATGTTTAGTGTGCGATTGCGACGAAAAGAGGTAGCAAGTACGT
GCACGGTATCGCGGAGGTAATGTGGGATTTTGGGCTTGCTGAGCTAGCTG
GCTGGTGGGCGGATGGATTGGCTGAAGTAGTGGGGAGGGGTCGTGAAACG
GCTGCTTCATTTCGGAGTAAGCAAAGGCCGTGGTACAAGAAGAAGGATTA
CATGAATAGGAAGGAGAGAGGGCACAATCTTGGGAGACCTTGTCAAGTAG
TGCGAATTGAAACATATTGTCGAGTGATGAGAATACACAGGAGGGACACC
TGCGTTGTCTCTCTTTTTCTTTTTTGCGTTTCGCTATTGATCCGTCATGT
ATCCCTGAACAAAAATTAAGATAGAAATTATTATTTTCGTGTCTGGAGGG
AAAGTTAGATGGAGACCCCACCGGCTGAGGGACGTAGGTGATGTTGGAAC
ACGCCCATAGCCTGCTGCTGCTGCTGCTGCTGCTGCCGACTGATTACTCA
CAGGTTGCGAGAGAGGAACTTGTGTATTTCTGTCTTACGAAGGAAGGACA
GAGTGTATACAGAACATTAGTAATGATGCATCGTGGGCGACCTTGCATTT
GCCATGTGGGTTTGATGGGTATCTAGAGAGGGTGAGAGAGAGAGTGAGAG
AGATGAGAGGGGGGTGGGAGCAGGAGCCACAGCAGAGTTCAGGCAGAGGG
GCAGGGGGTGGAGATGTACTTTTGAAGTTTTGCGCTTCATGAATGCACGG
CGCTGTAGATTATATCGTGCAAGCTCGTCTTCACAAAATATATGCGTATA
TGCCTCTGAAGCGTGGCAGCAGCAGCGAAAGAAGAAAAAGGAGAACGATG
CGATCAGCACCATGAGCGTTTTTTCTCCCTCTTTCTCTTCGTTATTGGCT
GGCTGGTTGTTGTATCGTTTAGAGCTTGTTGTCGGCAAGGGATCGATCGA
CTACCGGACACACATACAGCTAGCTTTTTAGCTACGTAAATTCACATACA
TGAGCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5636:339..8246+

>mRNA_H-paniculata_contig5636.13164.1 ID=mRNA_H-paniculata_contig5636.13164.1|Name=mRNA_H-paniculata_contig5636.13164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig5636:339..8246+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATGGCGTGCGTGGCGTTCATGGCCCACTACAATGGAGTCAAGTA
TTACGAGGAACTCGAGAATCGGTCCGTCAGAAAGTACACCATCACCATCG
GATGAACATGGCGTGCGTGGCGTTCATGGCCCACTACAATGGAGTCAAGT
ATTACGAGGAACTCGAGAATCGGTCCGTCAGAAAGTACACCATCACCATC
GGCACGGCCATGACGGTTTCCCTGGGCGTATTCAGCACGATGATGCTGTT
CGGCTTCCGTACATTCGGCCCCGCCGCCCAGGCTCTCATCCTCAATAATT
ACCACCGTACGGCGGACCCTATGGCTAGCCTCGCCCGCCTGGCCACGGGT
TGCTCGATCTTGTGTGGGTACCCCCTCATGTTCGCCGCTCTCAAGGCTTC
GTTCTTCAACGCTGCGGCCGAGATATCGGAGAAGTTTGGCGATTCGGGAC
GGAAGTTGGCGAACCGGTTTTTGGCGGACGAAGGGCTCCGCACGACACGG
CCATGACGGTTTCCCTGGGCGTATTCAGCACGATGATGCTGTTCGGCTTC
CGTACATTCGGCCCCGCCGCCCAGGCTCTCATCCTCAATAATTACCACCG
TACGGCGGACCCTATGGCTAGCCTCGCCCGCCTGGCCACGGGTTGCTCGA
TCTTGTGTGGGTACCCCCTCATGTTCGCCGCTCTCAAGGCTTCGTTCTTC
AACGCTGCGGCCGAGATATCGGAGAAGTTTGGCGATTCGGGACGGAAGTT
GGCGAACCGGTTTTTGGCGGACGAAGGGCTCCGCACGAGCTGCATCTTGT
CCCTCCTCGCAGTGATCACGAGCATTGCTTGCAACCAGTCGGAAGAGGAT
GTAGCAGTTATCGTGGGTCTTATCGGTGCCCTCTTGGGCTGCATCTTGTC
CCTCCTCGCAGTGATCACGAGCATTGCTTGCAACCAGTCGGAAGAGGATG
TAGCAGTTATCGTGGGTCTTATCGGTGCCCTCTTGGGTTCCGCCGCGAAT
TATATCATACCCGCCGTGCTCAATCTCAGCCTTCTCAAGCGCATGGGGAG
CAAGCGCGGGCTGTTCTCGGAGGTTACCCTGAACAAAATCATTATCGTGT
TCGGCTTCGTGTTCATGGCCCTGGGCACCGTGGTGACTCTGAAAGATGCC
GGCGCGCACGGTGGGGGGCACGAGGCTGGCGGGTCCGTTATGTAAGTTCC
GCCGCGAATTATATCATACCCGCCGTGCTCAATCTCAGCCTTCTCAAGCG
CATGGGGAGCAAGCGCGGGCTGTTCTCGGAGGTTACCCTGAACAAAATCA
TTATCGTGTTCGGCTTCGTGTTCATGGCCCTGGGCACCGTGGTGACTCTG
AAAGATGCCGGCGCGCACGGTGGGGGGCACGAGGCTGGCGGGTCCGTTAT
GTAA
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