mRNA_H-paniculata_contig56325.13160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56325.13160.1
Unique NamemRNA_H-paniculata_contig56325.13160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: D7FXC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.750e-36
Identity = 86/211 (40.76%), Postives = 123/211 (58.29%), Query Frame = 1
Query:  124 RDPLPDFSDRRSWYGARIFTGTDPGTAYTSNAQYHAIRTMHQAHGVAGHVAHACRIAGSMLDARN--------SVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEE-QREILQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLAR 729
            R   P F+DR  WY  R+FT  D G  YT+  +Y A++ +H+ H V GHV HA R++ +   ARN        +VT +KD + G   T +LVYRPLS  SALSQSG+V PGES  TA Y+N RQ +D P  LVN +   F + +R++      G      TE+ T+D + +LRLVL+R A  +  + P+  +  + PF++ +F E A +AR
Sbjct:   81 RKKSPTFTDRTKWYRERVFTFADGGE-YTAKDEYAAVKRLHKEHSVGGHVVHAARVSATQEGARNRVPPGETQAVTRMKDINGGALGTTTLVYRPLSAQSALSQSGAVGPGESSATAAYYNPRQHVDVPDGLVNHVLPRFMDVRRQLFDGKERGEG--HMTERGTVDPVEYLRLVLVRGAVELQEELPENWLLKRFPFNSREFLERAPVAR 288          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: A0A177VL61_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VL61_9BASI)

HSP 1 Score: 91.3 bits (225), Expect = 2.550e-17
Identity = 76/250 (30.40%), Postives = 112/250 (44.80%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIFTGTDPG------TAYTSNAQYHAIRTMHQAHGV-AGHVAHACRIAGSMLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEEQREILQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLARTK 735
            GKT K GR    +       + CP+ +L  YL+ R+ V  +  PDFS R  WY  R+    DP       T  T+  Q   +R      G+ + +  HA R  G+   A    +      HG ++T     R ++ AS       VL G       Y+  R  L+PP +L +++F   +  R  L    P  A E KT    LDLI HLR VLL+ AA +   +P   +++  PFS+++F  W+   R K
Sbjct:  430 GKTNKNGRPERGVVARAKEVVRCPVSALAFYLFERYHVREESPPDFSSRSEWYDDRLLI--DPSIPATRTTGLTAEKQCVLLRQAFDDVGIISSNFTHAMRHGGARFAAAAGCSDHTIKQHGRWATDVCTERYMTDASL--PPVRVLAGFHKDGGDYWLPRTLLEPPSNLASLLFPWADTWRPSLAGRAP--AHEDKTAGLFLDLIVHLRTVLLQDAAFLQPLYPTLAVWSSVPFSSAEFASWSASLRQK 673          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: A0A1Q5SPN9_9EURO (Uncharacterized protein n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5SPN9_9EURO)

HSP 1 Score: 80.1 bits (196), Expect = 1.610e-13
Identity = 70/269 (26.02%), Postives = 104/269 (38.66%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIFTGTDP---GTAYTSNAQY----------HAIRTMHQAHGVAGHVAHACRIAGSMLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEEQREILQKTIPGWATEKKTE-------------------KATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWA 717
            GKT++ GR      L H +P+LCP+ SL LYL+WRFD+  +P PDF+ RRSWY  R+  G        +Y + A +          H+ +  H   G +  +A A  I        + +        G  ST  L   P            +  G   T   Y   R  + PP  L   I+             + GW                          K  LDL++ LR+ +L+ AAV+    P + ++  P F   D+R +A
Sbjct:  296 GKTLEAGRTDYTGILRHRDPVLCPLASLALYLFWRFDMAGEPPPDFNSRRSWYRRRLIPGKQQEQNSLSYETQALWIRRAFAEAGIHSSKVTHTMRGASARIADAQGIP------EDQIRRAGHWERGSMSTAYLARLPREYMR-------IAAGFPRTAGNYHLRRAAVLPPVALERRIW-----------PWVDGWLARYDASIVSGCSFANGGLDDCDIAGKQFLDLLAWLRITMLQDAAVLQQQFPLFPLWQHPIFCGPDWRRFA 540          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: W2JDE6_PHYPR (NDC10_II domain-containing protein (Fragment) n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JDE6_PHYPR)

HSP 1 Score: 78.2 bits (191), Expect = 3.790e-13
Identity = 65/251 (25.90%), Postives = 110/251 (43.82%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIF-TGTDPGTAYTSNAQYHAIRTMHQAHGVAGHV-AHACRIAGSMLD-----ARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEE-QREILQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLARTK 735
            GKT + GR      + H N  +CP+ +LG YL++R+ V  + +P+F     WY  ++   G +  T  T  A Y A      A G+      HA R +GS +      + + +  +   + G    C L   P     +L+       G S     +F  R  L PP  L   +F   E      +Q + P  AT        LD++ +LR+V+L+ A +++  HP   ++    F++ +F+ +AT  + K
Sbjct:   47 GKTNQYGRREFGSCIRHRNVEVCPVGALGFYLFYRWGVQNEDIPNFLVPEEWYDIKVLKAGKNKTTPMTYRAHYDATIKAFSALGIKSKAKTHAARGSGSRMAELAGASESQIRRLGRWNAGAMEDCYLTALPREAMRSLA-------GFSSDRHSFFLERAALTPPDSLQRRVFPFVESYMAAYIQSSAPHLATG-----GFLDMLRYLRVVVLQDAVLLSDVHPAHKLWGHTLFNSDEFKTFATELKAK 285          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: A0A081A4G3_PHYPR (NDC10_II domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081A4G3_PHYPR)

HSP 1 Score: 78.2 bits (191), Expect = 6.590e-13
Identity = 65/251 (25.90%), Postives = 110/251 (43.82%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIF-TGTDPGTAYTSNAQYHAIRTMHQAHGVAGHV-AHACRIAGSMLD-----ARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEE-QREILQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLARTK 735
            GKT + GR      + H N  +CP+ +LG YL++R+ V  + +P+F     WY  ++   G +  T  T  A Y A      A G+      HA R +GS +      + + +  +   + G    C L   P     +L+       G S     +F  R  L PP  L   +F   E      +Q + P  AT        LD++ +LR+V+L+ A +++  HP   ++    F++ +F+ +AT  + K
Sbjct:  222 GKTNQYGRREFGSCIRHRNVEVCPVGALGFYLFYRWGVQNEDIPNFLVPEEWYDIKVLKAGKNKTTPMTYRAHYDATIKAFSALGIKSKAKTHAARGSGSRMAELAGASESQIRRLGRWNAGAMEDCYLTALPREAMRSLA-------GFSPDRHSFFLERAALTPPDSLQRRVFPFVESYMAAYIQSSAPHLATG-----GFLDMLRYLRVVVLQDAVLLSDVHPAHKLWGHTLFNSDEFKTFATELKAK 460          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: A0A6A3H5K0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3H5K0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.850e-13
Identity = 64/253 (25.30%), Postives = 112/253 (44.27%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIF-TGTDPGTAYTSNAQYHAIRTMHQAHGVAGHV-AHACRIAGSMLD-----ARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEEQREILQKTIPGWATEKKTEKAT---LDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLARTK 735
            GKT + GR      + H N  +CP+ +LGLYL++R+ +  + +P+F +   WY  ++  +G    TA T  A Y A      A G+      HA R +GS +      + + +  +   + G    C L   P     +L+       G S     ++  R  L PP  L   +F         ++  +  +  +     AT   L+L+S+LR+V+L+ A ++   HP   ++  P F T+ F E++   + K
Sbjct:  222 GKTNQYGRREFGSCIRHRNVEVCPVGALGLYLFYRWSIKNEAIPNFLEPEQWYDIKVLKSGKGMTTALTYRAHYDATVKAFTALGMHSKAKTHAARGSGSRMAELAGASESQIRRLGRWNAGAMEGCYLTALPRDAMRSLA-------GFSPDRRSFYLERAALVPPDSLQREVF-------PFVENYMTAYTKQSAPHVATGGFLNLLSYLRVVVLQDAVLLRELHPAHKLWGHPLFRTNAFTEFSEALKAK 460          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: A0A8H5HEM9_9AGAR (Uncharacterized protein n=3 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HEM9_9AGAR)

HSP 1 Score: 77.4 bits (189), Expect = 1.400e-12
Identity = 75/264 (28.41%), Postives = 112/264 (42.42%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDR-----------RSWYGARIFTGT-DPGTAYTSNAQYHAIRTMHQAHGVA-GHVAHACRIAGSMLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQ---------LDPPPHLVNMIFRGFEEQREILQ--KTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLA 726
            GKT   GR     +  H  P LCPI +LG YL+ +F V  + +P+F+             RSWY   +F G+ D  T  T       + T H  + ++   V HA R   +M    +  T     + G +S      +    A         LP +++  A  FN R+Q         L PP  L+  IF   E+++  LQ  +   G      T +  LDL+  LR ++L+ AAV+    P   IF   PF+T  FR +A  +
Sbjct:  402 GKTNTTGRIDEQAAFRHRVPELCPIGALGFYLFSKFHVVNNSIPNFAPDYEDPRGGGIGLRSWYQIYLFPGSKDDRTEMTYENHRKRVNTAHVLNEISIRKVTHAGRPFAAMTAREHCATSDDTKALGNWSQNGSFRKCYDTA---------LPTDAMLAAASFNGRRQDSYFIPRDELAPPQELLTSIFPWVEDEQSSLQGRQASHGRNGGDVTLQKFLDLLCRLRCIILQDAAVLCHKFPSSSIFAYAPFNTPVFRTFAATS 656          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: W2YDZ7_PHYPR (NDC10_II domain-containing protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2YDZ7_PHYPR)

HSP 1 Score: 73.9 bits (180), Expect = 1.530e-11
Identity = 67/246 (27.24%), Postives = 107/246 (43.50%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIF-TGTDPGTAYTSNAQYHAIRTMHQAHGVAGHV-AHACRIAGSMLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEE-QREILQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLARTK 735
            GKT + G       + H N  +CPI SL +YL++R+ V  + +PDF     WY  ++  +G D  TA T    Y A      A G+      HA R +G+ +      T  +    G ++  S+    LS     +     L G +     +F  R  L PP HL   +F   E      ++++ P  AT        LDL+ +LR+VLL+ A ++   HP   +++ PP   +  R      ++K
Sbjct:  195 GKTNQLGCREFGSCIRHQNVEVCPIGSLAMYLFFRWSVQMETIPDFLMPEKWYDIKVLKSGKDAATAMTYRTHYDATVKAFTALGMHSKAKTHAARGSGARMAKVAGATESQIRRLGRWNASSMEGCYLSALPREAMRS--LAGFTPYRRTFFLERAVLVPPDHLQREVFLFVENYMAAYMKQSAPHVATG-----GFLDLLLYLRVVLLQDAILLRDVHPAHKLWSHPPIQHTSLRRLRDWVKSK 433          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: I1CCD1_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CCD1_RHIO9)

HSP 1 Score: 73.9 bits (180), Expect = 1.910e-11
Identity = 63/252 (25.00%), Postives = 114/252 (45.24%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIFTGTDPGTAYTSNAQYHAIRTMHQAHGV-AGHVAHACRIAGSMLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQ---------LDPPPHLVNMIFRGFEEQREI------LQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREW 714
            GKT + G+     SL H +  +C I +L LYL+ RF  + +  P+F  R +WY   +F G  P  A    AQ+     + +  G+    V HA + +   + A+ +V+ V+    G + T  +V R +S           LP E++ +   FN +Q          + P   L  ++F+  E  +E       +Q+ I G           L+L++HLR++LL+ + V+   +P + ++    F T  ++ +
Sbjct:  241 GKTSQHGKIEYGSSLRHRDVEVCSIGALALYLFSRFHFENEEFPNFEKRENWYKTVVFKGDSPFKAIQYKAQHSTYVDVFKKVGIHTSKVTHANKKSALNMIAQENVSKVQQRMVGRWGTDKMVGRYVSS----------LPIETMKSLAGFNGQQHSNYFLPRAVIKPSLALQKLVFKDIEYWKERFNIGYDIQEDIAG--------PNFLNLLAHLRVILLQDSVVLKKKYPQYYLWNCEIFQTELYKNF 474          
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Match: I1CKN2_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CKN2_RHIO9)

HSP 1 Score: 73.2 bits (178), Expect = 3.410e-11
Identity = 66/252 (26.19%), Postives = 112/252 (44.44%), Query Frame = 1
Query:    7 GKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSDRRSWYGARIFTGTDPGTAYTSNAQYHAIRTMHQAHGV-AGHVAHACRIAGSMLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQ---------LDPPPHLVNMIFRGFEEQREI------LQKTIPGWATEKKTEKATLDLISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREW 714
            GKT + G+     SL H +  +C I +L LYL+ RF  + +  PDF  R +WY A +F G  P  A    AQ+     + +  G+    V HA R     + A+ +V+  +    G + T  +V   +S           LP E++ +   FN +Q          + P   L  ++F+  E  +E       +Q+ I G           L+L++HLR+VLL+ + V+   +P + ++    F T  +R +
Sbjct:  223 GKTNQHGKIEYGSSLRHRDVEVCSIGALALYLFSRFHFENEEFPDFEKRENWYKAVVFKGDSPFKAIQYKAQHSTYVDVFKKVGIHTSKVTHANRKIALNMIAQENVSGDQQRMVGRWGTDRMVGCYVSS----------LPVEAMKSLAGFNGQQHSNYFLPRAVIKPSLTLQRLVFKDIEYWKERFNTGHDIQEDIAG--------PNFLNLLAHLRIVLLQDSVVLKKKYPQYYLWNCEIFQTELYRNF 456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56325.13160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXC9_ECTSI6.750e-3640.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A177VL61_9BASI2.550e-1730.40Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A1Q5SPN9_9EURO1.610e-1326.02Uncharacterized protein n=1 Tax=Penicillium subrub... [more]
W2JDE6_PHYPR3.790e-1325.90NDC10_II domain-containing protein (Fragment) n=1 ... [more]
A0A081A4G3_PHYPR6.590e-1325.90NDC10_II domain-containing protein n=1 Tax=Phytoph... [more]
A0A6A3H5K0_9STRA6.850e-1325.30Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A8H5HEM9_9AGAR1.400e-1228.41Uncharacterized protein n=3 Tax=Tricholomella cons... [more]
W2YDZ7_PHYPR1.530e-1127.24NDC10_II domain-containing protein n=1 Tax=Phytoph... [more]
I1CCD1_RHIO91.910e-1125.00Uncharacterized protein n=1 Tax=Rhizopus delemar (... [more]
I1CKN2_RHIO93.410e-1126.19Uncharacterized protein n=1 Tax=Rhizopus delemar (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56325contigH-paniculata_contig56325:62..993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score84.3
Seed ortholog evalue8.4e-14
Seed eggNOG ortholog5501.XP_001239642.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Centromere DNA-binding protein complex CBF3 subunit, domain 2
EggNOG OGs20STJ@147545,2CZQT@1,2SBAB@2759,3A9BV@33154,3B77C@33183,3P788@4751,3R05R@4890
COG Functional cat.S
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
Exons2
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930599.814306-CDS-H-paniculata_contig56325:61..4761622930599.814306-CDS-H-paniculata_contig56325:61..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56325 62..476 -
1691481366.1984196-CDS-H-paniculata_contig56325:61..4761691481366.1984196-CDS-H-paniculata_contig56325:61..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56325 62..476 -
1622930599.833044-CDS-H-paniculata_contig56325:673..9931622930599.833044-CDS-H-paniculata_contig56325:673..993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56325 674..993 -
1691481366.213228-CDS-H-paniculata_contig56325:673..9931691481366.213228-CDS-H-paniculata_contig56325:673..993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56325 674..993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56325.13160.1prot_H-paniculata_contig56325.13160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56325 62..993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56325.13160.1

>prot_H-paniculata_contig56325.13160.1 ID=prot_H-paniculata_contig56325.13160.1|Name=mRNA_H-paniculata_contig56325.13160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
RSGKTIKQGRHRNAMSLEHINPLLCPIFSLGLYLWWRFDVDRDPLPDFSD
RRSWYGARIFTGTDPGTAYTSNAQYHAIRTMHQAHGVAGHVAHACRIAGS
MLDARNSVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTA
IYFNARQQLDPPPHLVNMIFRGFEEQREILQKTIPGWATEKKTEKATLDL
ISHLRLVLLRSAAVVALDHPDWVIFTQPPFSTSDFREWATLARTK
back to top

mRNA from alignment at H-paniculata_contig56325:62..993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56325.13160.1 ID=mRNA_H-paniculata_contig56325.13160.1|Name=mRNA_H-paniculata_contig56325.13160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=932bp|location=Sequence derived from alignment at H-paniculata_contig56325:62..993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCCGGCAAAACGATTAAGCAGGGACGTCATAGGAATGCCATGTCTCT CGAACATATCAACCCGCTCCTCTGCCCGATATTTTCACTCGGGCTCTACC TTTGGTGGAGGTTTGATGTCGATCGAGATCCTCTTCCAGACTTCAGCGAT AGACGAAGCTGGTACGGGGCGCGGATTTTCACAGGAACCGACCCTGGGAC AGCTTACACCTCCAATGCTCAATATCACGCCATCAGGACTATGCATCAAG CACACGGTGTCGCCGGTCATGTGGCTCACGCTTGTCGTATTGCGGGCAGC ATGTTGGATGCTCGAAACAGGTAAAGATAACCGTTCCTTTCTTCTCGGAG ACTTGTATCGACCGCCGATGCGATCTTGTTCAGGTCGGCACAAAGCACAA TCAACTACACCGTCCGTCACTCCAAATAAAGTGCCAACTCTCCCTCCCTT TCGATGCCCCCGCTCTACCGTCCTTTGTTTCTACGAGAAAAAGGGTCTCT CCTGAAGAAACGGCAAGCGTAACCCATGTGAAGGATGGGTCACATGGACC GTTCAGCACCTGCTCACTTGTCTACCGACCACTTTCCATCGCCAGCGCTC TATCTCAGTCGGGGTCCGTGCTTCCGGGAGAAAGTGTGACGACAGCGATC TACTTTAATGCGCGTCAACAGCTCGATCCTCCACCTCACTTGGTCAACAT GATATTTAGGGGATTTGAGGAGCAGCGCGAAATACTACAAAAGACGATAC CCGGATGGGCTACCGAAAAGAAGACCGAAAAAGCCACACTCGACCTAATA AGCCACCTTCGGCTCGTTTTGCTACGAAGTGCCGCCGTCGTTGCTCTTGA CCATCCGGATTGGGTTATATTTACGCAACCTCCCTTCAGCACAAGTGATT TCCGCGAGTGGGCGACTTTGGCTCGAACCAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig56325:62..993-

>mRNA_H-paniculata_contig56325.13160.1 ID=mRNA_H-paniculata_contig56325.13160.1|Name=mRNA_H-paniculata_contig56325.13160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig56325:62..993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCCGGCAAAACGATTAAGCAGGGACGTCATAGGAATGCCATGTCTCT
CGAACATATCAACCCGCTCCTCTGCCCGATATTTTCACTCGGGCTCTACC
TTTGGTGGAGGTTTGATGTCGATCGAGATCCTCTTCCAGACTTCAGCGAT
AGACGAAGCTGGTACGGGGCGCGGATTTTCACAGGAACCGACCCTGGGAC
AGCTTACACCTCCAATGCTCAATATCACGCCATCAGGACTATGCATCAAG
CACACGGTGTCGCCGGTCATGTGGCTCACGCTTGTCGTATTGCGGGCAGC
ATGTTGGATGCTCGAAACAGAGGTCCGGCAAAACGATTAAGCAGGGACGT
CATAGGAATGCCATGTCTCTCGAACATATCAACCCGCTCCTCTGCCCGAT
ATTTTCACTCGGGCTCTACCTTTGGTGGAGGTTTGATGTCGATCGAGATC
CTCTTCCAGACTTCAGCGATAGACGAAGCTGGTACGGGGCGCGGATTTTC
ACAGGAACCGACCCTGGGACAGCTTACACCTCCAATGCTCAATATCACGC
CATCAGGACTATGCATCAAGCACACGGTGTCGCCGGTCATGTGGCTCACG
CTTGTCGTATTGCGGGCAGCATGTTGGATGCTCGAAACAGCGTAACCCAT
GTGAAGGATGGGTCACATGGACCGTTCAGCACCTGCTCACTTGTCTACCG
ACCACTTTCCATCGCCAGCGCTCTATCTCAGTCGGGGTCCGTGCTTCCGG
GAGAAAGTGTGACGACAGCGATCTACTTTAATGCGCGTCAACAGCTCGAT
CCTCCACCTCACTTGGTCAACATGATATTTAGGGGATTTGAGGAGCAGCG
CGAAATACTACAAAAGACGATACCCGGATGGGCTACCGAAAAGAAGACCG
AAAAAGCCACACTCGACCTAATAAGCCACCTTCGGCTCGTTTTGCTACGA
AGTGCCGCCGTCGTTGCTCTTGACCATCCGGATTGGGTTATATTTACGCA
ACCTCCCTTCAGCACAAGTGATTTCCGCGAGTGGGCGACTTTGGCTCGAA
CCAAACGTAACCCATGTGAAGGATGGGTCACATGGACCGTTCAGCACCTG
CTCACTTGTCTACCGACCACTTTCCATCGCCAGCGCTCTATCTCAGTCGG
GGTCCGTGCTTCCGGGAGAAAGTGTGACGACAGCGATCTACTTTAATGCG
CGTCAACAGCTCGATCCTCCACCTCACTTGGTCAACATGATATTTAGGGG
ATTTGAGGAGCAGCGCGAAATACTACAAAAGACGATACCCGGATGGGCTA
CCGAAAAGAAGACCGAAAAAGCCACACTCGACCTAATAAGCCACCTTCGG
CTCGTTTTGCTACGAAGTGCCGCCGTCGTTGCTCTTGACCATCCGGATTG
GGTTATATTTACGCAACCTCCCTTCAGCACAAGTGATTTCCGCGAGTGGG
CGACTTTGGCTCGAACCAAA
back to top