mRNA_H-paniculata_contig5632.13158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5632.13158.1
Unique NamemRNA_H-paniculata_contig5632.13158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 3.280e-96
Identity = 186/366 (50.82%), Postives = 226/366 (61.75%), Query Frame = 1
Query:    1 MLTPTKIYVAPLQGSGGVAVSTMDNWMLRTVPILLAAALGSSAATLGIDVDGYLTASVSSEEMSIDENAGASAVVADLLVSGEDKAVSLLKYWSQSLSSFAGSFEMLLAEFGISGSSVVCVALAVTVLAFIFVRKAG---GPSGGGNSSKRMSVLFLGPCGAGKTAMMHRLCHDR---IVSTVTSMQACHYLYR-------VNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYDVLSDPLMEGCRGLLVALNKSDVKEAKTSRAKALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSV-KDGSLDAVADFVRAS 1056
            ML PT +YVAP                            G++ +T      G  ++   + E    E AG   VVA  L S  DKA ++L      L S   S E  LAE+G+  +S+V   +A+ +   + + K G            ++  VLFLGPCG+GKTAM +RL H     +V T TSM+AC Y          + RNG     S  S SLVDYPGHERLRGGV EELR A+RVVF+LDGSCLA Q+AA AEL YDVL+DP +EGC+GL++ALNKSD+KEAK SRAK LLQKE++KLRGTR  LGTQGEED MP A+ALGRPGQPFSLEVDSPCEVV+AGCSV K+G LD+V DFVRAS
Sbjct:    1 MLEPTMVYVAPAASRXXXXXXXXXXXXXXXXXXXXXXXXGAARSTAV--APGTTSSGSGAAEPGEGEIAG---VVAQALASNSDKAAAVLSQ----LESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRAS 357          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.080e-35
Identity = 73/155 (47.10%), Postives = 104/155 (67.10%), Query Frame = 1
Query:  589 GGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYDVLSDPLMEGCRGLLVALNKSDVKEAKTSRAKALLQKEMEKLRGTRDTLGTQGEED--QMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVADFV 1047
            G S  S ++ D+PGHERLRGG+R EL  +  V+F+LDG+ L+ Q+    E+ YD+L+D  +E C+GL +  +K+D+K AK  R +A L KE+E+LR TR ++G QGEED  +  + + LGR GQP  L VD PC + +  CSVK   L+AV DF+
Sbjct:   19 GSSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEGLNAVRDFI 173          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL)

HSP 1 Score: 123 bits (308), Expect = 2.190e-29
Identity = 84/206 (40.78%), Postives = 114/206 (55.34%), Query Frame = 1
Query:  436 SKRMSVLFLGPCGAGKTAMMHRLCHDRIVSTVTSMQACHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYDVLSDPLMEGCRG-LLVALNKSDVKEAKTSRA-KALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVADFV 1047
            +K+   + LGP GAGKTA+ H+L   R V TVTSM      + V+         G   S+VDYPGHERLR  V +       VVFV+D +  +++   AAE  YD+ S+         +L+A NK+D+K A T    K  L+KE+ KL+ TR +L T+GEED   + + +GR G  F   VD+PCEV     S K G +D VA FV
Sbjct:   52 NKKKMTMLLGPRGAGKTALFHQLRDGRFVETVTSMTELEGKFAVHDRYNTIN-FGAHLSIVDYPGHERLRSRVADYYPVTGCVVFVVDAADQSFR--KAAEYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDT--SVVPVGRDGVAFEFAVDAPCEVTFVKSSFKAGDVDDVATFV 252          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.210e-28
Identity = 93/240 (38.75%), Postives = 135/240 (56.25%), Query Frame = 1
Query:  352 VVCVALAVTVLAFIFVRKAGGPSGGGNSSKRMSVLFLGPCGAGKTAMMHRLCHDRI-VSTVTSMQACHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCL--AWQIAAAAELFYDVLSDPLM-EGCRGLLVALNKSDVKEAKT-SRAKALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVA---DFV 1047
            VV  A+ V +LAFI    A G S GG   KR  +L LGPCG GKTA+ HRL      V TVTSM+     + +            + S++D+PGHERLR  V +    A+++VFV+D + +  A Q+  AAE  YD+   P + +    LLVA +K+DV  A T S  ++LL+ E+ +L+ TR +L    +++ +P    LGR   PF+ +VD+PCEVV    S+   S +A+A   DF+
Sbjct:   15 VVAGAVLVLLLAFIIKLAASGSSPGG---KRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKETLETFPLFDE------EAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIH--SAEAIAPLLDFI 239          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.720e-28
Identity = 82/226 (36.28%), Postives = 129/226 (57.08%), Query Frame = 1
Query:  349 SVVCVALAVTVLAFIFVRKAGGPSGGGNSSKRMSVLFLGPCGAGKTAMMHRLCHDRI-VSTVTSMQACHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLA--WQIAAAAELFYDVLSDP-LMEGCRGLLVALNKSD-VKEAKTSRAKALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSV 1011
            +V  VA  V +L   F+ K    SG G   KR  +L LGPCG+GKTA+ HRL    + V TVTSM+     + ++           + S++D+PGHERLR    +    A+++VF++D + ++   Q+  AAE  +D+ + P L +    +L+A +K+D    A  SR + LL+ E+ +L+GTR +L TQ +++ +P    LGR   PF+ +VD+PCEVV    S+
Sbjct:   12 AVYAVAGVVLLLLVAFIIKLAA-SGSGPRGKRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFPLHDE------ETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSI 226          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A0P1AAE2_PLAHL (Signal recognition particle receptor subunit beta n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAE2_PLAHL)

HSP 1 Score: 117 bits (294), Expect = 2.300e-27
Identity = 86/244 (35.25%), Postives = 132/244 (54.10%), Query Frame = 1
Query:  349 SVVCVALAVTVLAFIFVRKAGGPSGGGNSSKRMSVLFLGPCGAGKTAMMHRLCHDRI-VSTVTSMQA------CHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYDVLSDP-LMEGCRGLLVALNKSDVKEAKTSRA-KALLQKEMEKLRGTRDTLGTQGEEDQMPAA-LALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVADFVR 1050
            +V+C+     VLA  F+    G + G    K+ ++L LGP  AGKT+  H L HD I V TV+SM+        H  Y +++   E        ++VDYPGHERLR  V +       +VF +D S +A     AAE  YD+ ++  + +    L+V  NKS+   A  S+  +  L+KE+ KL+ TR +L T+G++D+     + +GR G PF  +VD+PCE++   CSVKD  +  V  F++
Sbjct:   24 AVICL-----VLALHFITHIQGLNAGLTGKKKKTILLLGPRHAGKTSFFH-LIHDGIHVDTVSSMKERTDRFIVHSKYNLDKLDTE-------LTVVDYPGHERLRSRVADFYPVTSCIVFFVDASDVA-SFRKAAEFLYDIFANKNVNDQSPPLMVVCNKSEAVGAVGSQVVRDALEKELTKLKATRSSLETEGDDDEQDLTQVPVGRDGAPFQFDVDAPCEILFVKCSVKDAEISDVVHFIQ 253          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A2D4C0M5_PYTIN (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0M5_PYTIN)

HSP 1 Score: 116 bits (290), Expect = 9.080e-27
Identity = 78/206 (37.86%), Postives = 117/206 (56.80%), Query Frame = 1
Query:  436 SKRMSVLFLGPCGAGKTAMMHRLCHDRIVSTVTSMQACHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYDVLSDPLMEGCRG-LLVALNKSDVKEAKTSRA-KALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVADFV 1047
            +K+   L LG  GAGKTA+ H+L   R V TVTSM+     + V+ +       G   +++D+PGHER R  V +       VVF++D +  +++   AAE  YD+ S+         +L+A NKSD+  A +  A K  L+KE+ KL+ TR +L T+GEED   + + +GR G  F  +VD+PCEV    CSVK G ++ ++ FV
Sbjct:   54 NKKRMTLLLGARGAGKTALFHQLRDGRFVETVTSMKELEGKFAVHPSYNTIN-FGAHLTVIDFPGHERQRSRVADFYPVTGCVVFLVDAADPSFR--KAAEFLYDIFSNAKFNDVAPKMLIACNKSDLSSAASVDAVKEALEKELTKLKKTRSSLETEGEEDT--STVPVGRDGAAFQFDVDAPCEVSFTRCSVKKGDMEELSTFV 254          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.130e-26
Identity = 87/252 (34.52%), Postives = 134/252 (53.17%), Query Frame = 1
Query:  340 SGSSVVCVALAVTV---LAFIFVRKAGG----PSGGGNSSKRMSVLFLGPCGAGKTAMMHRLCHDRIVSTVTSMQACHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERV---VFVLDGSCLAW-QIAAAAELFYDVLSDPLMEGCRGLLVALNKSDVKEAKT-SRAKALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKD----GSLDAVADFV 1047
            SG  + C+ L + +   L F+ + +A G    P G    ++   V+ LGPCGAGKTA+ H+L ++ +  TVTSM     + +                LVD+PGHERLRGG +++   A +V   +FV+D +  +  ++  AAE  YD+L+   M+    LLVA +KSD+  AK  +R KALL  E+E+LR T+      G  ++    L LGR   P +L+VD+P E+  A  +V      G  DA+ + +
Sbjct:   79 SGIIITCLLLLLVLGLSLYFVGIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILKDK-----------DIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDI 319          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A7S1U4H0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4H0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.970e-26
Identity = 93/252 (36.90%), Postives = 130/252 (51.59%), Query Frame = 1
Query:  337 ISGSSVVCVALAVTVLAFI--FVRKAGGPSGGGNSSK---RMSVLFLGPCGAGKTAMMHRLCHDRIVSTVTSMQACHYLYRVNRNGGESGGSGPSAS-LVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYDVLSDPLMEGCRGLLVALNKSDVKEAKT-SRAKALLQKEMEKLRGTR----DTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVADFVRASA 1059
            ++G   + +AL V V+  +  F+   GG  GG        + +VL +GP GAGKT M H+L  D +  T+TSM+             E+    PS   LVD+PGH RLR  +   + +A  +V VLD S         AE  +++L+DP +E    +LVA NKSDV  AK   + +  +++E+E+LR TR    D  G     D++P    LGRPG  F LE D+PCEV     SV  G L  V +FV A A
Sbjct:   22 VAGVDPLVLALTVVVILALPAFLSWLGGVLGGXXXXXXRGKHAVLLVGPSGAGKTCMFHKLLRDEVPETLTSMK-------------EAAEKLPSGKQLVDFPGHIRLRANLDAWIDQAAALVLVLDASNPRSGPREGAEFLFELLTDPRLEAGPPVLVACNKSDVVGAKAPEKIRLAVEREIEELRKTRAAKADVSGGAAA-DKLP----LGRPGMKFKLEEDAPCEVRFVAASVAKGELGDVLEFVEAHA 255          
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.470e-26
Identity = 82/232 (35.34%), Postives = 130/232 (56.03%), Query Frame = 1
Query:  370 AVTVLAFIFVRKAGGPSGGGNSSKRMSVLFLGPCGAGKTAMMHRLCHDRI-VSTVTSMQACHYLYRVNRNGGESGGSGPSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCL--AWQIAAAAELFYDVLSDPLMEGCR-GLLVALNKSDVKEAKTSRA-KALLQKEMEKLRGTRDTLGTQGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCS-VKDGSLDAVADFV 1047
            A  VL F+ ++   G SG   SSKR  VL +GPCGAGKTA+ HRL      V+TVTSM+     + +            + ++ D+PGHER+R    +    A++++FV+D +    A  I  AAE  YD+ + P +      +++A +KSD  +A TS   ++LL+ E+ +L+ TR +L   GE+D+   ++ LGR   PF+ ++D+PCEV     S V   +L+ + DF+
Sbjct:   19 AALVLFFVLLKLCSGGSGI-RSSKRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLFDE------ENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5632.13158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI3.280e-9650.82Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA1.080e-3547.10Signal recognition particle receptor subunit beta ... [more]
A0A8K1FBH7_PYTOL2.190e-2940.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TLZ7_9STRA3.210e-2838.75Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA8.720e-2836.28Signal recognition particle receptor subunit beta ... [more]
A0A0P1AAE2_PLAHL2.300e-2735.25Signal recognition particle receptor subunit beta ... [more]
A0A2D4C0M5_PYTIN9.080e-2737.86Signal recognition particle receptor subunit beta ... [more]
W7U264_9STRA1.130e-2634.52Signal recognition particle receptor subunit beta ... [more]
A0A7S1U4H0_9STRA1.970e-2636.90Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA2.470e-2635.34Signal recognition particle receptor subunit beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5632contigH-paniculata_contig5632:1529..2593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue6.8e-81
Seed eggNOG ortholog2880.D7FJF4
Preferred nameSRPRB
KEGG koko:K12272,ko:K13343,ko:K14736
KEGG TC3.A.20.1,3.A.5.8
KEGG Pathwayko03060,ko04066,ko04146,ko04216,ko04978,map03060,map04066,map04146,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0001666,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002526,GO:0003002,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005506,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0005856,GO:0005874,GO:0005881,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007591,GO:0008104,GO:0008150,GO:0008199,GO:0008219,GO:0008284,GO:0008363,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010720,GO:0012501,GO:0012505,GO:0014013,GO:0014015,GO:0014070,GO:0014074,GO:0015031,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019725,GO:0019899,GO:0022008,GO:0023052,GO:0030001,GO:0030003,GO:0030154,GO:0030176,GO:0030867,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031625,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031984,GO:0032354,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034698,GO:0034976,GO:0035017,GO:0035293,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036293,GO:0036498,GO:0040003,GO:0042127,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042592,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044057,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051286,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060284,GO:0062023,GO:0065007,GO:0065008,GO:0070445,GO:0070447,GO:0070482,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071371,GO:0071372,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072512,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098771,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000177,GO:2000179
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG2229@1,KOG0090@2759
Ec32 ortholog descriptionSRPRB, beta subunit of the signal recognition particle receptor
Ec32 orthologEc-14_006140.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko04031,ko04131,ko04147
Exons1
Model size1065
Cds size1065
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930599.5508761-CDS-H-paniculata_contig5632:1528..25931622930599.5508761-CDS-H-paniculata_contig5632:1528..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5632 1529..2593 -
1691481366.0655835-CDS-H-paniculata_contig5632:1528..25931691481366.0655835-CDS-H-paniculata_contig5632:1528..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5632 1529..2593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5632.13158.1prot_H-paniculata_contig5632.13158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5632 1529..2593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5632.13158.1

>prot_H-paniculata_contig5632.13158.1 ID=prot_H-paniculata_contig5632.13158.1|Name=mRNA_H-paniculata_contig5632.13158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
MLTPTKIYVAPLQGSGGVAVSTMDNWMLRTVPILLAAALGSSAATLGIDV
DGYLTASVSSEEMSIDENAGASAVVADLLVSGEDKAVSLLKYWSQSLSSF
AGSFEMLLAEFGISGSSVVCVALAVTVLAFIFVRKAGGPSGGGNSSKRMS
VLFLGPCGAGKTAMMHRLCHDRIVSTVTSMQACHYLYRVNRNGGESGGSG
PSASLVDYPGHERLRGGVREELRKAERVVFVLDGSCLAWQIAAAAELFYD
VLSDPLMEGCRGLLVALNKSDVKEAKTSRAKALLQKEMEKLRGTRDTLGT
QGEEDQMPAALALGRPGQPFSLEVDSPCEVVMAGCSVKDGSLDAVADFVR
ASAR*
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mRNA from alignment at H-paniculata_contig5632:1529..2593-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5632.13158.1 ID=mRNA_H-paniculata_contig5632.13158.1|Name=mRNA_H-paniculata_contig5632.13158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-paniculata_contig5632:1529..2593- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGCCCACCAAAATATATGTTGCACCATTGCAAGGTAGCGGTGG GGTGGCCGTTTCCACAATGGACAACTGGATGCTGCGTACGGTACCTATTT TGCTGGCAGCGGCCTTGGGATCATCAGCAGCAACCCTAGGCATCGATGTG GATGGGTATTTGACAGCATCAGTTTCCTCCGAGGAGATGTCCATCGATGA GAATGCTGGTGCAAGTGCTGTTGTGGCTGATCTTCTGGTGTCCGGGGAAG ATAAAGCGGTGTCGCTGCTGAAATATTGGAGCCAATCGCTGTCCTCGTTT GCAGGGTCTTTTGAAATGCTTCTGGCAGAGTTCGGGATATCAGGTTCCTC TGTGGTCTGCGTCGCACTCGCCGTGACTGTCCTCGCCTTCATCTTCGTCC GTAAGGCCGGCGGCCCCAGTGGTGGCGGCAATTCGTCGAAACGCATGAGC GTTTTGTTTCTCGGCCCATGCGGTGCAGGGAAGACCGCCATGATGCACCG GCTCTGCCACGATCGCATCGTGTCAACAGTTACGTCCATGCAAGCGTGCC ACTACCTCTACAGGGTCAACCGTAACGGGGGCGAAAGCGGCGGCAGCGGG CCGTCTGCTTCTCTCGTTGATTACCCGGGGCATGAGAGGCTTCGAGGTGG AGTTAGGGAAGAGTTACGCAAGGCGGAGAGGGTCGTCTTCGTTCTCGATG GTTCATGCCTTGCATGGCAAATCGCGGCGGCCGCAGAGCTGTTCTACGAC GTCTTGTCCGATCCATTGATGGAGGGCTGCCGAGGGCTCCTTGTGGCACT CAATAAGAGCGATGTCAAGGAAGCTAAGACGTCTCGCGCGAAGGCCTTGC TGCAGAAAGAGATGGAGAAGCTTAGGGGAACAAGGGACACTCTCGGCACG CAGGGAGAGGAGGATCAAATGCCCGCGGCGTTGGCACTCGGTCGGCCTGG ACAACCCTTCAGCTTGGAGGTAGACTCGCCATGCGAGGTGGTTATGGCTG GTTGCTCTGTGAAGGACGGTAGCCTCGATGCTGTGGCTGACTTTGTGCGG GCATCCGCACGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5632:1529..2593-

>mRNA_H-paniculata_contig5632.13158.1 ID=mRNA_H-paniculata_contig5632.13158.1|Name=mRNA_H-paniculata_contig5632.13158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at H-paniculata_contig5632:1529..2593- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGCCCACCAAAATATATGTTGCACCATTGCAAGGTAGCGGTGG
GGTGGCCGTTTCCACAATGGACAACTGGATGCTGCGTACGGTACCTATTT
TGCTGGCAGCGGCCTTGGGATCATCAGCAGCAACCCTAGGCATCGATGTG
GATGGGTATTTGACAGCATCAGTTTCCTCCGAGGAGATGTCCATCGATGA
GAATGCTGGTGCAAGTGCTGTTGTGGCTGATCTTCTGGTGTCCGGGGAAG
ATAAAGCGGTGTCGCTGCTGAAATATTGGAGCCAATCGCTGTCCTCGTTT
GCAGGGTCTTTTGAAATGCTTCTGGCAGAGTTCGGGATATCAGGTTCCTC
TGTGGTCTGCGTCGCACTCGCCGTGACTGTCCTCGCCTTCATCTTCGTCC
GTAAGGCCGGCGGCCCCAGTGGTGGCGGCAATTCGTCGAAACGCATGAGC
GTTTTGTTTCTCGGCCCATGCGGTGCAGGGAAGACCGCCATGATGCACCG
GCTCTGCCACGATCGCATCGTGTCAACAGTTACGTCCATGCAAGCGTGCC
ACTACCTCTACAGGGTCAACCGTAACGGGGGCGAAAGCGGCGGCAGCGGG
CCGTCTGCTTCTCTCGTTGATTACCCGGGGCATGAGAGGCTTCGAGGTGG
AGTTAGGGAAGAGTTACGCAAGGCGGAGAGGGTCGTCTTCGTTCTCGATG
GTTCATGCCTTGCATGGCAAATCGCGGCGGCCGCAGAGCTGTTCTACGAC
GTCTTGTCCGATCCATTGATGGAGGGCTGCCGAGGGCTCCTTGTGGCACT
CAATAAGAGCGATGTCAAGGAAGCTAAGACGTCTCGCGCGAAGGCCTTGC
TGCAGAAAGAGATGGAGAAGCTTAGGGGAACAAGGGACACTCTCGGCACG
CAGGGAGAGGAGGATCAAATGCCCGCGGCGTTGGCACTCGGTCGGCCTGG
ACAACCCTTCAGCTTGGAGGTAGACTCGCCATGCGAGGTGGTTATGGCTG
GTTGCTCTGTGAAGGACGGTAGCCTCGATGCTGTGGCTGACTTTGTGCGG
GCATCCGCACGCTGAATGCTCACGCCCACCAAAATATATGTTGCACCATT
GCAAGGTAGCGGTGGGGTGGCCGTTTCCACAATGGACAACTGGATGCTGC
GTACGGTACCTATTTTGCTGGCAGCGGCCTTGGGATCATCAGCAGCAACC
CTAGGCATCGATGTGGATGGGTATTTGACAGCATCAGTTTCCTCCGAGGA
GATGTCCATCGATGAGAATGCTGGTGCAAGTGCTGTTGTGGCTGATCTTC
TGGTGTCCGGGGAAGATAAAGCGGTGTCGCTGCTGAAATATTGGAGCCAA
TCGCTGTCCTCGTTTGCAGGGTCTTTTGAAATGCTTCTGGCAGAGTTCGG
GATATCAGGTTCCTCTGTGGTCTGCGTCGCACTCGCCGTGACTGTCCTCG
CCTTCATCTTCGTCCGTAAGGCCGGCGGCCCCAGTGGTGGCGGCAATTCG
TCGAAACGCATGAGCGTTTTGTTTCTCGGCCCATGCGGTGCAGGGAAGAC
CGCCATGATGCACCGGCTCTGCCACGATCGCATCGTGTCAACAGTTACGT
CCATGCAAGCGTGCCACTACCTCTACAGGGTCAACCGTAACGGGGGCGAA
AGCGGCGGCAGCGGGCCGTCTGCTTCTCTCGTTGATTACCCGGGGCATGA
GAGGCTTCGAGGTGGAGTTAGGGAAGAGTTACGCAAGGCGGAGAGGGTCG
TCTTCGTTCTCGATGGTTCATGCCTTGCATGGCAAATCGCGGCGGCCGCA
GAGCTGTTCTACGACGTCTTGTCCGATCCATTGATGGAGGGCTGCCGAGG
GCTCCTTGTGGCACTCAATAAGAGCGATGTCAAGGAAGCTAAGACGTCTC
GCGCGAAGGCCTTGCTGCAGAAAGAGATGGAGAAGCTTAGGGGAACAAGG
GACACTCTCGGCACGCAGGGAGAGGAGGATCAAATGCCCGCGGCGTTGGC
ACTCGGTCGGCCTGGACAACCCTTCAGCTTGGAGGTAGACTCGCCATGCG
AGGTGGTTATGGCTGGTTGCTCTGTGAAGGACGGTAGCCTCGATGCTGTG
GCTGACTTTGTGCGGGCATCCGCACGCTGA
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