mRNA_H-paniculata_contig56310.13157.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56310.13157.1
Unique NamemRNA_H-paniculata_contig56310.13157.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56310.13157.1 vs. uniprot
Match: A0A6H5K0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z2_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.910e-6
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   13 GFAGGMLLAFALMPQIILAHKRQSTSDISFVWQ 111
            G  GG++LA AL+PQI+LAHKR+S  DIS++WQ
Sbjct:   16 GTTGGIILACALVPQIVLAHKRRSAEDISYMWQ 48
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BLAST of mRNA_H-paniculata_contig56310.13157.1 vs. uniprot
Match: A0A7S1Y593_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y593_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.690e-5
Identity = 20/38 (52.63%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 IDMLGFAGGMLLAFALMPQIILAHKRQSTSDISFVWQV 114
            I+++G+ GG++LA AL+PQ+I + K +ST+DIS+ WQV
Sbjct:   12 IEIIGYVGGVVLAVALVPQVIKSWKEKSTADISYSWQV 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56310.13157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0Z2_9PHAE1.910e-663.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1Y593_9STRA2.690e-552.63Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56310contigH-paniculata_contig56310:471..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size132
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930599.4771645-CDS-H-paniculata_contig56310:470..5961622930599.4771645-CDS-H-paniculata_contig56310:470..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56310 471..596 -
1691481366.0401213-CDS-H-paniculata_contig56310:470..5961691481366.0401213-CDS-H-paniculata_contig56310:470..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56310 471..596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930599.4956696-UTR-H-paniculata_contig56310:596..6021622930599.4956696-UTR-H-paniculata_contig56310:596..602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56310 597..602 -
1691481366.0503185-UTR-H-paniculata_contig56310:596..6021691481366.0503185-UTR-H-paniculata_contig56310:596..602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56310 597..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56310.13157.1prot_H-paniculata_contig56310.13157.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56310 471..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56310.13157.1

>prot_H-paniculata_contig56310.13157.1 ID=prot_H-paniculata_contig56310.13157.1|Name=mRNA_H-paniculata_contig56310.13157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MLGFAGGMLLAFALMPQIILAHKRQSTSDISFVWQVSVPLYG
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mRNA from alignment at H-paniculata_contig56310:471..602-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56310.13157.1 ID=mRNA_H-paniculata_contig56310.13157.1|Name=mRNA_H-paniculata_contig56310.13157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig56310:471..602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGATATGCTCGGGTTCGCTGGTGGCATGCTCCTGGCGTTTGCTTTGAT
GCCGCAGATAATACTTGCTCACAAACGACAGAGTACATCAGACATCAGCT
TCGTCTGGCAGGTAAGCGTTCCTTTGTACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig56310:471..602-

>mRNA_H-paniculata_contig56310.13157.1 ID=mRNA_H-paniculata_contig56310.13157.1|Name=mRNA_H-paniculata_contig56310.13157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig56310:471..602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGGGTTCGCTGGTGGCATGCTCCTGGCGTTTGCTTTGATGCCGCA
GATAATACTTGCTCACAAACGACAGAGTACATCAGACATCAGCTTCGTCT
GGCAGGTAAGCGTTCCTTTGTACGGGATGCTCGGGTTCGCTGGTGGCATG
CTCCTGGCGTTTGCTTTGATGCCGCAGATAATACTTGCTCACAAACGACA
GAGTACATCAGACATCAGCTTCGTCTGGCAGGTAAGCGTTCCTTTGTACG
GG
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