mRNA_H-paniculata_contig563.13154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig563.13154.1
Unique NamemRNA_H-paniculata_contig563.13154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig563.13154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig563contigH-paniculata_contig563:27287..28993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size191
Cds size189
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig563.13154.1prot_H-paniculata_contig563.13154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig563 27287..28991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930599.1307902-CDS-H-paniculata_contig563:27286..273381622930599.1307902-CDS-H-paniculata_contig563:27286..27338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig563 27287..27338 +
1691481365.9119966-CDS-H-paniculata_contig563:27286..273381691481365.9119966-CDS-H-paniculata_contig563:27286..27338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig563 27287..27338 +
1622930599.1833282-CDS-H-paniculata_contig563:27824..278931622930599.1833282-CDS-H-paniculata_contig563:27824..27893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig563 27825..27893 +
1691481365.9242246-CDS-H-paniculata_contig563:27824..278931691481365.9242246-CDS-H-paniculata_contig563:27824..27893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig563 27825..27893 +
1622930599.2066865-CDS-H-paniculata_contig563:28923..289911622930599.2066865-CDS-H-paniculata_contig563:28923..28991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig563 28924..28991 +
1691481365.9349244-CDS-H-paniculata_contig563:28923..289911691481365.9349244-CDS-H-paniculata_contig563:28923..28991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig563 28924..28991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig563.13154.1

>prot_H-paniculata_contig563.13154.1 ID=prot_H-paniculata_contig563.13154.1|Name=mRNA_H-paniculata_contig563.13154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
RRRQLCGKGEGQYPARRGPNRLAERQDFHWHLEAWKVDWIWSVSVAGWTQ
TRGTVVKQQRRRT
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mRNA from alignment at H-paniculata_contig563:27287..28993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig563.13154.1 ID=mRNA_H-paniculata_contig563.13154.1|Name=mRNA_H-paniculata_contig563.13154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1707bp|location=Sequence derived from alignment at H-paniculata_contig563:27287..28993+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGGAGGCAATTATGTGGGAAAGGTGAAGGACAATATCCCGCACGGCG
AGGTGAGATAACCTAGAGCCGTGATGTTAAGTGCTGTGCTGCGCCGCAAT
GTAAACTGTGGGGTGTGCGATGGTACTAGAACGCCATGTTGATGCAGCAA
TCAGTTCCAACAAGGATTGCCAGTAACCACGTAACGATTTTATTATGCGG
ATATTCCGGGCCACGCCAATTTCTTTGTGATCATTGCAAAACTTGGGACG
ACTCGTTTACAACCCGTGTCGCCTTTTTACGGCTGTAGAAACGCTAACTT
CGCACCGGATAAAATAGCGCGCTCCCCAGCATTGCAGGTCGCCCCTCCTC
CCCCGCTCCGCTGCCTCTGACTTGCTCCCATGTATTTTCTGGCAGTTGAT
TTCCTCAGCATCCTTCCCCGCGCCTCTTCAGACACCCGCCGACCGCGTAA
GATGAGTGTTTCTTCGGTCTAACATGGTGCCTGTCATTTCTCCTTCGCTG
CGCATTTGCTGACGGGGTATGTCCTACACTGCATGTAGGGCCGAATCGAT
TGGCCGAGCGGCAGGACTTTCACTGGCACTTGGAAGCGTGGAAAGTGGAC
TGGATATGTGAGTTAATATTTTCTTCAACGTGGATGAACTCAACCGTTGT
CCATGATTTTTGAGTAGCTCTCTTACTACAGTAGTTGGTCAATACAACCA
ATTTATCCTTGAAATTTTAGTTGTGCGAAGGTGACGTTTAACTCAACATT
CGAGAGGTCATATTCCCCTGTAGCGCGGGTAGGTTTTCAGCCAAGAAAAG
TCGTACAGCCATGACACCTGCTTACGTTCTCCAGAGCACGTTGAACGCCA
TATGCAACCAATGTACACGCCCTGCGTGTAATATTGGCCAAAGGTGATAT
TGTCAACTCGACAAATATCAAGTACCAACAAAATACACAGAAGTATATAT
AATCATGTAGCACAATCAAGCTTGGGATGTTACAGTACTGCATCTACGAC
AATTGGATATGTTACTAATTCTAATTGGTGGTGAAATATACACTGAATTC
TGCAATCTTCTCTCACTTTAATATGTGTCGTGGTCCCACCGTGACGCGGT
ACTTTTCGAATCATTGAATATTTTCATCCGTGCGATTCGTGTTGAAAATC
AGCAGTGTTTCTTATCGGGCGATCCAAAGAAGTGCCAAAAAGCAGATGTG
GGTGCCCAAGAACGCATCTGCGATTCGTTGGGCCCCGAGGCCTGGTGTAG
CCTTTCTGCTCTATGAATAAAAAATAACCCAAACTAGATCTCAGAAAGCA
GATCCTGCAGGGCTGCGTCCCGAAAGGGTCAACAACAGTTTAGGCGAGTA
GTTTGGACAGGCATGTTGACACGGCAGAATTATTTTAGATCGCTTGTAAG
TCGCATGAGTCGGTTCGCACGCGCATGCGCTTGTTATGAGTCGGTTCGCG
GCTGGTCCTGTGAGCGTTTTGCCCGGTTCGTGGGCGGCTATATGAGAGAT
TATCGGCCATGTGCAAAGGCTGTGGAATTTTTGGGAGCATTGAAGTGTGT
TTGTCACATACAATCACAACCGCGCCTTTCTTGGATCGCGTCGAATCAAA
ATGCTTACCGCGTTATTAAATCTTTGAAATATGGCAGGGAGTGTTTCTGT
GGCCGGATGGACGCAGACAAGAGGGACAGTGGTTAAACAACAGCGCAGAA
GGACTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig563:27287..28993+

>mRNA_H-paniculata_contig563.13154.1 ID=mRNA_H-paniculata_contig563.13154.1|Name=mRNA_H-paniculata_contig563.13154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig563:27287..28993+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGGAGGCAATTATGTGGGAAAGGTGAAGGACAATATCCCGCACGGCG
AGCGGAGGAGGCAATTATGTGGGAAAGGTGAAGGACAATATCCCGCACGG
CGAGGGCCGAATCGATTGGCCGAGCGGCAGGACTTTCACTGGCACTTGGA
AGCGTGGAAAGTGGACTGGATATGGCCGAATCGATTGGCCGAGCGGCAGG
ACTTTCACTGGCACTTGGAAGCGTGGAAAGTGGACTGGATATGGAGTGTT
TCTGTGGCCGGATGGACGCAGACAAGAGGGACAGTGGTTAAACAACAGCG
CAGAAGGACTGGAGTGTTTCTGTGGCCGGATGGACGCAGACAAGAGGGAC
AGTGGTTAAACAACAGCGCAGAAGGACT
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