mRNA_H-paniculata_contig56293.13153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56293.13153.1
Unique NamemRNA_H-paniculata_contig56293.13153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 121 bits (303), Expect = 2.360e-30
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   16 VSKGKPKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLP 432
            V KG+P S  EA+KGPE EKW+  +  E  A+ +N T        L  GR+ I  KWIFK+KL E+G+V RYKARLVA+G+SQ EG D  ET AP+ R  T+ T+   AA + +E+   D+  A+LN  +EEE+F++LP
Sbjct:  169 VEKGEPVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKN--LPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEIFMELP 305          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 121 bits (303), Expect = 4.210e-29
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   16 VSKGKPKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLP 432
            V KG+P S  EA+KGPE EKW+  +  E  A+ +N T        L  GR+ I  KWIFK+KL E+G+V RYKARLVA+G+SQ EG D  ET AP+ R  T+ T+   AA + +E+   D+  A+LN  +EEE+F++LP
Sbjct:  544 VEKGEPVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKN--LPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEIFMELP 680          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 113 bits (283), Expect = 7.380e-28
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   31 PKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF 441
            P S  EA+   EAE W      E  +L  NGT E  D   L  GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D  ET AP+ R  T+  V  +AA+  F++  MD++ A+LN  ++E+++++ P  F
Sbjct:   67 PSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 200          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 115 bits (287), Expect = 3.430e-27
Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   52 LKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLP 432
            +KGPEAE W+A M  E  +L ENGT +  D   L  GRKA+  KWIFKRKL EDG+V RYKARLVAQGF+Q  G D  E  AP+ R  T   +  +A++    ++  D+  AYLN  +EE +F++ P
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQP 124          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 115 bits (288), Expect = 4.870e-27
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   31 PKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLP 432
            P+S AEA   PE  +W+  M  E   + E GT   ED   L AGR  I  KW+F +K  EDG+++RYKARLVAQG+SQ+ G D  ET AP+ R+ ++     +AA  D E+  MD+  AYLN  +EEE++++ P
Sbjct:  879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQP 1009          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A5E8BG36_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BG36_9ASCO)

HSP 1 Score: 115 bits (287), Expect = 6.600e-27
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   10 EAVSKGKPKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF 441
            E +S   P S  EA+   EAE W      E  +L  NGT E  D   L  GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D  ET AP+ R  T+  V  +AA+  F++  MD++ A+LN  ++E+++++ P  F
Sbjct:  725 ECISYRHPSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 865          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A5E8B7H8_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B7H8_9ASCO)

HSP 1 Score: 115 bits (287), Expect = 6.800e-27
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   10 EAVSKGKPKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF 441
            E +S   P S  EA+   EAE W      E  +L  NGT E  D   L  GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D  ET AP+ R  T+  V  +AA+  F++  MD++ A+LN  ++E+++++ P  F
Sbjct: 1688 ECISYRHPSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 1828          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A5E8C189_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C189_9ASCO)

HSP 1 Score: 115 bits (287), Expect = 6.920e-27
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   10 EAVSKGKPKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF 441
            E +S   P S  EA+   EAE W      E  +L  NGT E  D   L  GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D  ET AP+ R  T+  V  +AA+  F++  MD++ A+LN  ++E+++++ P  F
Sbjct:  515 ECISYRHPSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 655          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A5E8C149_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C149_9ASCO)

HSP 1 Score: 113 bits (283), Expect = 2.140e-26
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   31 PKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF 441
            P S  EA+   EAE W      E  +L  NGT E  D   L  GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D  ET AP+ R  T+  V  +AA+  F++  MD++ A+LN  ++E+++++ P  F
Sbjct:  206 PSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 339          
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO)

HSP 1 Score: 113 bits (283), Expect = 2.220e-26
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   31 PKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGRLSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAPIARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF 441
            P S  EA+   EAE W      E  +L  NGT E  D   L  GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D  ET AP+ R  T+  V  +AA+  F++  MD++ A+LN  ++E+++++ P  F
Sbjct:  708 PSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGF 841          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56293.13153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI2.360e-3047.48Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI4.210e-2947.48Integrase catalytic domain-containing protein n=2 ... [more]
A0A5E8C1W8_9ASCO7.380e-2845.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL3.430e-2748.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284QR88_ARMOS4.870e-2744.78Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A5E8BG36_9ASCO6.600e-2745.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8B7H8_9ASCO6.800e-2745.14Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A5E8C189_9ASCO6.920e-2745.14Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A5E8C149_9ASCO2.140e-2645.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C4W4_9ASCO2.220e-2645.99Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56293contigH-paniculata_contig56293:3..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score115.5
Seed ortholog evalue2e-23
Seed eggNOG ortholog4538.ORGLA04G0228900.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930599.079511-CDS-H-paniculata_contig56293:2..4431622930599.079511-CDS-H-paniculata_contig56293:2..443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56293 3..443 -
1691481365.9015918-CDS-H-paniculata_contig56293:2..4431691481365.9015918-CDS-H-paniculata_contig56293:2..443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56293 3..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56293.13153.1prot_H-paniculata_contig56293.13153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56293 3..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56293.13153.1

>prot_H-paniculata_contig56293.13153.1 ID=prot_H-paniculata_contig56293.13153.1|Name=mRNA_H-paniculata_contig56293.13153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
NFTEAVSKGKPKSAAEALKGPEAEKWRAEMKGEWGALVENGTRESEDTGR
LSAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDLIETSAP
IARMSTLHTVFRLAAEHDFELEGMDIDAAYLNAPVEEELFIKLPLDF
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mRNA from alignment at H-paniculata_contig56293:3..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56293.13153.1 ID=mRNA_H-paniculata_contig56293.13153.1|Name=mRNA_H-paniculata_contig56293.13153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig56293:3..443- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTTACAGAGGCGGTATCTAAGGGGAAGCCGAAATCCGCGGCAGAAGC ATTAAAGGGTCCAGAGGCGGAAAAATGGCGCGCGGAAATGAAGGGAGAAT GGGGGGCGTTGGTGGAAAATGGAACACGGGAAAGCGAAGACACAGGGAGG TTATCGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAACGGAA ACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTC AAGGCTTTTCCCAAGTGGAGGGTGAAGATTTAATTGAAACCAGTGCTCCC ATAGCTCGTATGTCGACGTTACATACTGTTTTTAGGCTGGCCGCTGAACA TGATTTCGAATTAGAAGGTATGGACATAGATGCGGCGTATTTGAACGCCC CGGTAGAAGAAGAGCTGTTTATTAAGCTACCCCTCGATTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig56293:3..443-

>mRNA_H-paniculata_contig56293.13153.1 ID=mRNA_H-paniculata_contig56293.13153.1|Name=mRNA_H-paniculata_contig56293.13153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig56293:3..443- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTTACAGAGGCGGTATCTAAGGGGAAGCCGAAATCCGCGGCAGAAGC
ATTAAAGGGTCCAGAGGCGGAAAAATGGCGCGCGGAAATGAAGGGAGAAT
GGGGGGCGTTGGTGGAAAATGGAACACGGGAAAGCGAAGACACAGGGAGG
TTATCGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAACGGAA
ACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTC
AAGGCTTTTCCCAAGTGGAGGGTGAAGATTTAATTGAAACCAGTGCTCCC
ATAGCTCGTATGTCGACGTTACATACTGTTTTTAGGCTGGCCGCTGAACA
TGATTTCGAATTAGAAGGTATGGACATAGATGCGGCGTATTTGAACGCCC
CGGTAGAAGAAGAGCTGTTTATTAAGCTACCCCTCGATTTTAACTTTACA
GAGGCGGTATCTAAGGGGAAGCCGAAATCCGCGGCAGAAGCATTAAAGGG
TCCAGAGGCGGAAAAATGGCGCGCGGAAATGAAGGGAGAATGGGGGGCGT
TGGTGGAAAATGGAACACGGGAAAGCGAAGACACAGGGAGGTTATCGGCA
GGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAACGGAAACTGAAGGA
GGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGCTTTT
CCCAAGTGGAGGGTGAAGATTTAATTGAAACCAGTGCTCCCATAGCTCGT
ATGTCGACGTTACATACTGTTTTTAGGCTGGCCGCTGAACATGATTTCGA
ATTAGAAGGTATGGACATAGATGCGGCGTATTTGAACGCCCCGGTAGAAG
AAGAGCTGTTTATTAAGCTACCCCTCGATTTT
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