mRNA_H-paniculata_contig5621.13149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5621.13149.1
Unique NamemRNA_H-paniculata_contig5621.13149.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5621.13149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5621contigH-paniculata_contig5621:10007..11506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5621.13149.1prot_H-paniculata_contig5621.13149.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5621 10007..11430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930598.32864-CDS-H-paniculata_contig5621:10006..100671622930598.32864-CDS-H-paniculata_contig5621:10006..10067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5621 10007..10067 -
1691481365.527744-CDS-H-paniculata_contig5621:10006..100671691481365.527744-CDS-H-paniculata_contig5621:10006..10067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5621 10007..10067 -
1622930598.3462183-CDS-H-paniculata_contig5621:11293..114301622930598.3462183-CDS-H-paniculata_contig5621:11293..11430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5621 11294..11430 -
1691481365.5391064-CDS-H-paniculata_contig5621:11293..114301691481365.5391064-CDS-H-paniculata_contig5621:11293..11430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5621 11294..11430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930598.3637884-UTR-H-paniculata_contig5621:11430..115061622930598.3637884-UTR-H-paniculata_contig5621:11430..11506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5621 11431..11506 -
1691481365.5497012-UTR-H-paniculata_contig5621:11430..115061691481365.5497012-UTR-H-paniculata_contig5621:11430..11506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5621 11431..11506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5621.13149.1

>prot_H-paniculata_contig5621.13149.1 ID=prot_H-paniculata_contig5621.13149.1|Name=mRNA_H-paniculata_contig5621.13149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MTHCATCGSSRALPLPPHPAPPSQRPPSGCEDVANQAAHVANVPASGRRG
GVRRSHFVRRHHDRAR
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mRNA from alignment at H-paniculata_contig5621:10007..11506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5621.13149.1 ID=mRNA_H-paniculata_contig5621.13149.1|Name=mRNA_H-paniculata_contig5621.13149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig5621:10007..11506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGTATAGGACACGTTATTTGCGGAAAGATTATTACGGCATGACTTGT
ATGAAAGAAAACTACGAGGCAACGCTATGACACACTGCGCAACTTGCGGA
TCTTCACGAGCGTTACCCTTACCTCCACATCCTGCTCCACCTTCACAACG
TCCACCATCAGGTTGTGAAGACGTTGCCAACCAGGCCGCCCACGTTGCCA
ATGTCCCAGCAAGGTGAATTACTTGCGGTACGTTGGCAGTGTGGTGTAAC
GTATCCCAGAGTCCACCTTTCCCATGATTACAGTGTGACTACTTCCGCCC
CCACAACGTTGGGCGATAGCACTCTTTTTGGACTCAAAGTACCGCATTTC
CCCCCTCGAAATCGGGGAAAAAGAGTGCTTTCACATAACGCTGTCGGGGC
ACTAAAGTAGTAAACATCCCTAAAATGATTACAAGGCGATCGAGGGGCAC
TGGGTCCTCCGAATACATGTCACTGGTGATGACCATAGATAGGTCAGGGA
AAACACGGTTTTGGGGTTGAACACCGTTCAAAAAATGAACCTCAATTTGG
AAGACACACTCTTTTACACTGGTGAGACAGGTTTCCTAATAATAGACCAG
CTGTAAGCAATTATACACACACAAAAAAAATCTGAACCTTTGTTATAAAT
ATGACCGATGGTTTGTTATTCCTCATGTTTCTCCTGAGGGTCTCTGACGA
GGCGTGAGCGCATTTGAAAGTGTGTCATTGGTTTCATAACAAACAACATA
GTGCCGAAATTTTTCATACTGAGTCATTAGCATATAATAACTCCAACAAA
TACTTAATGCTAGTACTTGTGGAATAAAATGAATTATAATATGTATACTT
TATAGAACTCCACCCATAGAGTTCAACGACATACACATATTTATGACCGA
ATGATTCGCGTTTGCCTGATTACTAATTACAGTAGTAATCGACGGAGATC
CTGGTATTATCGCGGATCTGAGCAGGAAACACTCGAAACACGTGATGACA
ACCATTTCGTGTCTGTGTCGTGCCACACAACGGTTTCAAAATAAACGATC
AAGATATATCAAACGCCAAGCAGAAGAGCTACAACTCACAGCAGAAGCAT
TTGATAGCTAACGCAAAGTCCTAGAGAAGGGTCAACACTGTTGCTGTAGT
ATTAGCACTCGCTACTTCTCAACGCGAGATTTTTCTCAAGTTAAGAATCT
ATTCACTTGCTGGTTATCTGTGACGGGCAACATCGGCGCACTCCACAGGC
CCCCTCGCAGCCCCGATAGCAGTGTGGTCCTAGCACAAAAGAATAGAGCC
ACCACTCAAGGTCCACGCGTTTAGGCACACCTGTCCCACGTACGTCAACT
TTCAAAAGTAACAGCAGCAACATCGCCACCACCACCACTACCATCACCAC
CAACCATAATGGCCCAACATTCTTCTTCTGCCCACATAGTGGAAGGCGCG
GTGGTGTGCGACGGAGCCATTTTGTGCGGCGACATCACGATCGGGCAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5621:10007..11506-

>mRNA_H-paniculata_contig5621.13149.1 ID=mRNA_H-paniculata_contig5621.13149.1|Name=mRNA_H-paniculata_contig5621.13149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig5621:10007..11506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACACTGCGCAACTTGCGGATCTTCACGAGCGTTACCCTTACCTCC
ACATCCTGCTCCACCTTCACAACGTCCACCATCAGGTTGTGAAGACGTTG
CCAACCAGGCCGCCCACGTTGCCAATGTCCCAGCAAGATGACACACTGCG
CAACTTGCGGATCTTCACGAGCGTTACCCTTACCTCCACATCCTGCTCCA
CCTTCACAACGTCCACCATCAGGTTGTGAAGACGTTGCCAACCAGGCCGC
CCACGTTGCCAATGTCCCAGCAAGTGGAAGGCGCGGTGGTGTGCGACGGA
GCCATTTTGTGCGGCGACATCACGATCGGGCAAGATGGAAGGCGCGGTGG
TGTGCGACGGAGCCATTTTGTGCGGCGACATCACGATCGGGCAAGA
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