mRNA_H-paniculata_contig562.13148.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig562.13148.1
Unique NamemRNA_H-paniculata_contig562.13148.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig562.13148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig562contigH-paniculata_contig562:15470..16034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930598.0342474-CDS-H-paniculata_contig562:15469..157031622930598.0342474-CDS-H-paniculata_contig562:15469..15703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig562 15470..15703 +
1691481365.427941-CDS-H-paniculata_contig562:15469..157031691481365.427941-CDS-H-paniculata_contig562:15469..15703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig562 15470..15703 +
1622930598.0618804-CDS-H-paniculata_contig562:15947..160341622930598.0618804-CDS-H-paniculata_contig562:15947..16034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig562 15948..16034 +
1691481365.436647-CDS-H-paniculata_contig562:15947..160341691481365.436647-CDS-H-paniculata_contig562:15947..16034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig562 15948..16034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig562.13148.1prot_H-paniculata_contig562.13148.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig562 15470..16034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig562.13148.1

>prot_H-paniculata_contig562.13148.1 ID=prot_H-paniculata_contig562.13148.1|Name=mRNA_H-paniculata_contig562.13148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
DDGDGIEKDAGEDRSSDKTEAARGATTPRVVVTLRTLAKAAVTPGTARRA
AKMAKRTLATGATSSRMLQKLLQRIRKMIKSKKRKKAPLLTVVAHVEDED
ASPGVR*
back to top

mRNA from alignment at H-paniculata_contig562:15470..16034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig562.13148.1 ID=mRNA_H-paniculata_contig562.13148.1|Name=mRNA_H-paniculata_contig562.13148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig562:15470..16034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACGGCGACGGCATTGAGAAGGACGCCGGGGAAGACAGAAGCAGTGA
CAAGACGGAAGCGGCGAGGGGAGCGACGACCCCAAGGGTAGTGGTGACGC
TAAGGACGCTGGCGAAGGCGGCAGTTACGCCAGGGACGGCAAGGAGGGCA
GCAAAGATGGCAAAGAGGACATTGGCAACGGGAGCAACTTCATCTCGGAT
GCTGCAAAAGCTGCTGCAGCGAATTCGAAAGATGGTACGCGCCCGGCGAC
ACTGTCACCAATATGGCACAGTTTTTCTCCAAAATCGCTTCTATACCCAG
CGACCCCAGTTTTCATGTGTTGATACCACAGAGTTGAAATCCTTAGGCGA
GAACCTTTAGTTTTTGTTCTTGTTTTTACCGGTCTTACCCCGTCGTTATA
TATTCCACGAAAAGATGTACTGCGTGTTTTCATTGTTGTTGCTGGTATGT
TCCACTGTGTTATGGTTTCTTCTCGCAGATCAAGTCGAAAAAGCGAAAAA
AAGCACCACTTCTGACCGTTGTGGCTCATGTTGAAGATGAGGATGCCAGC
CCCGGCGTCAGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig562:15470..16034+

>mRNA_H-paniculata_contig562.13148.1 ID=mRNA_H-paniculata_contig562.13148.1|Name=mRNA_H-paniculata_contig562.13148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig562:15470..16034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACGGCGACGGCATTGAGAAGGACGCCGGGGAAGACAGAAGCAGTGA
CAAGACGGAAGCGGCGAGGGGAGCGACGACCCCAAGGGTAGTGGTGACGC
TAAGGACGCTGGCGAAGGCGGCAGTTACGCCAGGGACGGCAAGGAGGGCA
GCAAAGATGGCAAAGAGGACATTGGCAACGGGAGCAACTTCATCTCGGAT
GCTGCAAAAGCTGCTGCAGCGAATTCGAAAGATGGACGACGGCGACGGCA
TTGAGAAGGACGCCGGGGAAGACAGAAGCAGTGACAAGACGGAAGCGGCG
AGGGGAGCGACGACCCCAAGGGTAGTGGTGACGCTAAGGACGCTGGCGAA
GGCGGCAGTTACGCCAGGGACGGCAAGGAGGGCAGCAAAGATGGCAAAGA
GGACATTGGCAACGGGAGCAACTTCATCTCGGATGCTGCAAAAGCTGCTG
CAGCGAATTCGAAAGATGATCAAGTCGAAAAAGCGAAAAAAAGCACCACT
TCTGACCGTTGTGGCTCATGTTGAAGATGAGGATGCCAGCCCCGGCGTCA
GGTAAATCAAGTCGAAAAAGCGAAAAAAAGCACCACTTCTGACCGTTGTG
GCTCATGTTGAAGATGAGGATGCCAGCCCCGGCGTCAGGTAA
back to top