mRNA_H-paniculata_contig56197.13146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56197.13146.1
Unique NamemRNA_H-paniculata_contig56197.13146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A835Z8B5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.820e-30
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQE 213
            + AIWIVSELCSRGSLR VLDDRS  L P +RLRIAVDVAEGMLYLH+RD+PIIHRDLKSHN+FIQE
Sbjct:   95 ANAIWIVSELCSRGSLRQVLDDRSQQLTPVQRLRIAVDVAEGMLYLHTRDQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A836CLH3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.160e-29
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQE 213
            SQAIWIVSELCSRGSLR VLDDRS  LP   RLRIAVD+AEGMLYLHSR++PIIHRDLKSHN+FIQE
Sbjct:   95 SQAIWIVSELCSRGSLRQVLDDRSQHLPLVMRLRIAVDIAEGMLYLHSREQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: D7FTR3_ECTSI (Similar to Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR3_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 7.140e-28
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   10 RSQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQED 216
            +  AIWIVSELC RGSLR VLDDR  PL P  RLR+AVDVAEGMLYLHSR+EP+IHRDLKSHNIF+ ED
Sbjct:  518 QENAIWIVSELCPRGSLRQVLDDRGTPLTPWARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMED 586          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.200e-28
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQED 216
            SQAIWIVSELC RGSLR VLDDR   L P  RLR+AVDVAEGMLYLHSR+EP+IHRDLKSHNIF+ ED
Sbjct: 1145 SQAIWIVSELCPRGSLRQVLDDRGTSLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMED 1212          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: F0YIL7_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIL7_AURAN)

HSP 1 Score: 103 bits (258), Expect = 1.720e-25
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQE 213
            +QAIWIVSELCS GSLR VLDD S+ L    RLR+A+DVAEGMLYLH+RD PI+HRDLKSHN+F+ E
Sbjct:   77 AQAIWIVSELCSHGSLRSVLDDASLELGLETRLRMAIDVAEGMLYLHTRDHPIVHRDLKSHNLFVAE 143          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A7S2RPC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPC6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.380e-24
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQE 213
            +QAIW+VSELCS GSLR VLDD+   LP   R+++A+DVAEGMLYLHSRD PIIHRD+KSHN+F+QE
Sbjct:  292 AQAIWLVSELCSLGSLRQVLDDKHRELPISTRIQMAIDVAEGMLYLHSRDPPIIHRDIKSHNLFVQE 358          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A7S3XPL6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPL6_HETAK)

HSP 1 Score: 101 bits (251), Expect = 9.870e-24
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQEDS 219
            SQ++WIVSELCSRGSLR VL+DR   L    RL++A+DVAEGMLYLH+ + PI+HRDLKSHNIFI E S
Sbjct:  194 SQSLWIVSELCSRGSLRQVLNDRRTRLSTRRRLQLAIDVAEGMLYLHNHEAPIVHRDLKSHNIFIHEKS 262          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A7S0CKJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKJ9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.140e-23
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQEDS 219
            SQAIWIVSELCS GSLR +LDD+   L    RLR+A+ VAEGM+Y+H++D PI+HRDLKSHNIF+ E S
Sbjct:   23 SQAIWIVSELCSLGSLRQLLDDKEKDLSIRLRLRLALHVAEGMMYMHTQDPPILHRDLKSHNIFVHETS 91          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: K0R9T5_THAOC (Protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9T5_THAOC)

HSP 1 Score: 99.8 bits (247), Expect = 9.790e-23
Identity = 49/67 (73.13%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFIQE 213
            +QAIWIVSELCS GSLR VLDDR   LP   RL +A+ VAEGM YLHS+D PIIHRDLKSHNIF+ E
Sbjct:  921 AQAIWIVSELCSLGSLRQVLDDRERTLPLVTRLNLALQVAEGMAYLHSQDPPIIHRDLKSHNIFVHE 987          
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Match: A0A8J2X365_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X365_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.380e-22
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   13 SQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYLHSRDEPIIHRDLKSHNIFI 207
            +QAIWIVSELC+ GSLR VLDD  + L    RLR+A+DVAEGML+LH+R+ PI+HRDLKSHN+F+
Sbjct:  627 AQAIWIVSELCAHGSLRQVLDDDKVELSVETRLRMAIDVAEGMLFLHTRERPIVHRDLKSHNLFV 691          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56197.13146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8B5_9STRA7.820e-3083.58Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CLH3_9STRA7.160e-2985.07Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D7FTR3_ECTSI7.140e-2878.26Similar to Serine/threonine-protein kinase CTR1 n=... [more]
A0A6H5J8D6_9PHAE7.200e-2880.88Protein kinase domain-containing protein n=1 Tax=E... [more]
F0YIL7_AURAN1.720e-2573.13Protein kinase domain-containing protein (Fragment... [more]
A0A7S2RPC6_9STRA1.380e-2471.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XPL6_HETAK9.870e-2469.57Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0CKJ9_9STRA6.140e-2366.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K0R9T5_THAOC9.790e-2373.13Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A8J2X365_9STRA3.380e-2267.69Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56197contigH-paniculata_contig56197:225..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue8e-24
Seed eggNOG ortholog2880.D7FTR3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.9763079-CDS-H-paniculata_contig56197:224..4491622930597.9763079-CDS-H-paniculata_contig56197:224..449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56197 225..449 +
1691481365.4177036-CDS-H-paniculata_contig56197:224..4491691481365.4177036-CDS-H-paniculata_contig56197:224..449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56197 225..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56197.13146.1prot_H-paniculata_contig56197.13146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56197 225..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56197.13146.1

>prot_H-paniculata_contig56197.13146.1 ID=prot_H-paniculata_contig56197.13146.1|Name=mRNA_H-paniculata_contig56197.13146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MLWRSQAIWIVSELCSRGSLRHVLDDRSIPLPPGERLRIAVDVAEGMLYL
HSRDEPIIHRDLKSHNIFIQEDSK*
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mRNA from alignment at H-paniculata_contig56197:225..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56197.13146.1 ID=mRNA_H-paniculata_contig56197.13146.1|Name=mRNA_H-paniculata_contig56197.13146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig56197:225..449+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGGCGCTCCCAGGCGATCTGGATCGTGAGCGAGCTGTGTTCGCG CGGCAGTCTGAGGCACGTTCTTGATGACCGTAGCATCCCTCTCCCGCCCG GCGAACGTCTGCGAATAGCAGTGGATGTCGCCGAGGGCATGCTGTACCTG CACAGCCGAGACGAGCCCATCATCCACCGAGACTTGAAGAGCCACAATAT TTTCATTCAGGAAGACAGCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig56197:225..449+

>mRNA_H-paniculata_contig56197.13146.1 ID=mRNA_H-paniculata_contig56197.13146.1|Name=mRNA_H-paniculata_contig56197.13146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig56197:225..449+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGGCGCTCCCAGGCGATCTGGATCGTGAGCGAGCTGTGTTCGCG
CGGCAGTCTGAGGCACGTTCTTGATGACCGTAGCATCCCTCTCCCGCCCG
GCGAACGTCTGCGAATAGCAGTGGATGTCGCCGAGGGCATGCTGTACCTG
CACAGCCGAGACGAGCCCATCATCCACCGAGACTTGAAGAGCCACAATAT
TTTCATTCAGGAAGACAGCAAGTGAATGCTCTGGCGCTCCCAGGCGATCT
GGATCGTGAGCGAGCTGTGTTCGCGCGGCAGTCTGAGGCACGTTCTTGAT
GACCGTAGCATCCCTCTCCCGCCCGGCGAACGTCTGCGAATAGCAGTGGA
TGTCGCCGAGGGCATGCTGTACCTGCACAGCCGAGACGAGCCCATCATCC
ACCGAGACTTGAAGAGCCACAATATTTTCATTCAGGAAGACAGCAAGTGA
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