prot_H-paniculata_contig5617.13144.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5617.13144.1
Unique Nameprot_H-paniculata_contig5617.13144.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length264
Homology
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BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-10
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 0 
Query:   24 QRSEDPDVAIRYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVSMVVLEP 92
            ++ ED  V ++YL N++ HPDD KYR LK SN+KF  EVWL   +R +FLA+GF +R    V +  L P
Sbjct:   41 RQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKRSGGIVGLDPLAP 109
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BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.760e-9
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:   26 SEDPDVAIRYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGF 77
            +EDP  A++YL NI  HP + KYR LKK N +F  EVWL P +R +F AIGF
Sbjct:   21 NEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGF 72
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BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: A0A7S2SHY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHY0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.540e-6
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0 
Query:   23 EQRSEDPDVAIRYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVS--MVVLEPFP 94
            +Q   +P + +RYL NI AHP + +YRR++ +N KF + VW+    R +F A+GF + Q E  S  +V+ EP P
Sbjct:  158 DQECGEPQLMLRYLRNISAHPSEARYRRIRVTNGKFSKGVWVAAGGRMLFRAVGFREVQTEDGSKELVMGEPSP 231
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BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: F2UFY3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFY3_SALR5)

HSP 1 Score: 57.0 bits (136), Expect = 1.220e-5
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 0 
Query:   36 LENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVSMVVLEPFP 94
            L N++ HPDDPKYRR++K N   +R+++  P   E  LAIGF + +EE  S+ + +P P
Sbjct:  243 LGNLVDHPDDPKYRRVRKENAALQRDLFGHPGGVEAVLAIGFRESEEEPGSLYIRQPSP 301
[Close]
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: A0A0N4XQ29_NIPBR (PUB domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XQ29_NIPBR)

HSP 1 Score: 51.6 bits (122), Expect = 6.640e-5
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 0 
Query:   34 RYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVSMVVLEPF 93
            +YL+NII +PD+PKYRR++ SN+ F+  V      RE   A+GFE++ E        E F
Sbjct:   51 KYLQNIIENPDEPKYRRIRISNKVFQERVACVKGAREFLSAVGFEEKMEPAKEGAAPESF 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ99_ECTSI1.390e-1047.83PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQA1_9STRA2.760e-955.77PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2SHY0_9STRA3.540e-640.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F2UFY3_SALR51.220e-544.07Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A0N4XQ29_NIPBR6.640e-541.67PUB domain-containing protein n=1 Tax=Nippostrongy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018997PUB domainSMARTSM00580PGNneucoord: 27..89
e-value: 0.0074
score: 25.5
IPR018997PUB domainPFAMPF09409PUBcoord: 34..91
e-value: 6.8E-15
score: 54.8
NoneNo IPR availableGENE3D1.20.58.2190coord: 16..98
e-value: 7.4E-14
score: 53.2
NoneNo IPR availablePANTHERPTHR23153UBX-RELATEDcoord: 30..132
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 32..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5617contigH-paniculata_contig5617:3291..8885 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5617.13144.1mRNA_H-paniculata_contig5617.13144.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5617 3261..9618 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5617.13144.1 ID=prot_H-paniculata_contig5617.13144.1|Name=mRNA_H-paniculata_contig5617.13144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MASQEGITPVDMGSLNCKVREVEQRSEDPDVAIRYLENIIAHPDDPKYRR
LKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVSMVVLEPFPQERQKP
LAFVLKKMLGIRQRRRRGYQGSGGAGEAAAAGGQARTTAAGAGYPSGARS
HESQARGNGGFRCQSCGRTSLMEDIASNRPDVLWRSRRRDHAVTCRACGP
GVFVICGECFNTQAHDHPPDHLLILYANPERLAEQNPWPSRNRPPAPPPE
SGRGGRPRRGPWG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018997PUB_domain
IPR036339PUB-like_dom_sf