mRNA_H-paniculata_contig5615.13142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5615.13142.1
Unique NamemRNA_H-paniculata_contig5615.13142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5615.13142.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-17
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 LNAVIGAILFGLFEIKRNKRSVYAPRLEHLPHRTPPQLPYGFFRWIWSVARMSGPETLRCAG 186
            L+AV+G  L+ LFEIKRNKRSVYAPR   LPHR PP L YG  RW+W+VA + G +TLR AG
Sbjct:   55 LSAVLGLGLWLLFEIKRNKRSVYAPRPAKLPHRAPPTLAYGPLRWVWTVATLPGSDTLRLAG 116
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BLAST of mRNA_H-paniculata_contig5615.13142.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.130e-12
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LNAVIGAILFGLFEIKRNKRSVYAPRLEHLPHRTPPQLPYGFFRWIWSVARMSGPETLRCAGV 189
            L+AV+G  L+ LFEIKRNKRSVYAPR   LPHR PP L YG  RW+ + A + G +    AG+
Sbjct:   56 LSAVLGLGLWLLFEIKRNKRSVYAPRPAKLPHRAPPALVYGPLRWVGTGATLPGSDPFPLAGM 118
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BLAST of mRNA_H-paniculata_contig5615.13142.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.520e-8
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 LNAVIGAILFGLFEIKRNKRSVYAPRLEHLPHRTPPQLPYGFFRWIWSVARMSGPETLRCAG 186
            LN VIGA L  LFE+KR+K +VY  RL+   HRTP   P+  F W+  V RM G + L   G
Sbjct:   19 LNIVIGAALLLLFELKRDKTTVYGRRLDKTRHRTPDPPPFWCFGWLMPVWRMRGKDILDSVG 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5615.13142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JF22_9PHAE2.040e-1764.52ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LGF9_ECTSI2.130e-1255.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAA7_9STRA2.520e-848.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5615contigH-paniculata_contig5615:201..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog2880.D8LGF9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.2688866-CDS-H-paniculata_contig5615:200..3891622930597.2688866-CDS-H-paniculata_contig5615:200..389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5615 201..389 -
1691481365.1560123-CDS-H-paniculata_contig5615:200..3891691481365.1560123-CDS-H-paniculata_contig5615:200..389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5615 201..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5615.13142.1prot_H-paniculata_contig5615.13142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5615 201..389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5615.13142.1

>prot_H-paniculata_contig5615.13142.1 ID=prot_H-paniculata_contig5615.13142.1|Name=mRNA_H-paniculata_contig5615.13142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
LNAVIGAILFGLFEIKRNKRSVYAPRLEHLPHRTPPQLPYGFFRWIWSVA
RMSGPETLRCAGV
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mRNA from alignment at H-paniculata_contig5615:201..389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5615.13142.1 ID=mRNA_H-paniculata_contig5615.13142.1|Name=mRNA_H-paniculata_contig5615.13142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig5615:201..389- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAATGCTGTGATTGGGGCGATCCTGTTCGGACTGTTCGAGATCAAGCG
CAACAAGCGGAGCGTGTACGCGCCCCGACTGGAGCATCTTCCGCACCGCA
CCCCTCCGCAGCTTCCCTATGGATTTTTCCGATGGATCTGGTCGGTGGCG
AGGATGTCCGGCCCCGAGACGCTACGTTGTGCCGGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5615:201..389-

>mRNA_H-paniculata_contig5615.13142.1 ID=mRNA_H-paniculata_contig5615.13142.1|Name=mRNA_H-paniculata_contig5615.13142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig5615:201..389- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAATGCTGTGATTGGGGCGATCCTGTTCGGACTGTTCGAGATCAAGCG
CAACAAGCGGAGCGTGTACGCGCCCCGACTGGAGCATCTTCCGCACCGCA
CCCCTCCGCAGCTTCCCTATGGATTTTTCCGATGGATCTGGTCGGTGGCG
AGGATGTCCGGCCCCGAGACGCTACGTTGTGCCGGTGTGTTAAATGCTGT
GATTGGGGCGATCCTGTTCGGACTGTTCGAGATCAAGCGCAACAAGCGGA
GCGTGTACGCGCCCCGACTGGAGCATCTTCCGCACCGCACCCCTCCGCAG
CTTCCCTATGGATTTTTCCGATGGATCTGGTCGGTGGCGAGGATGTCCGG
CCCCGAGACGCTACGTTGTGCCGGTGTG
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