mRNA_H-paniculata_contig56149.13141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56149.13141.1
Unique NamemRNA_H-paniculata_contig56149.13141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A1I9LVW6_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW6_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.370e-89
Identity = 130/136 (95.59%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN 408
            +LSPKKTKF+KQHRGRLKGKASRGN INFG+YA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVA+VKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN
Sbjct:    1 MLSPKKTKFKKQHRGRLKGKASRGNNINFGEYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN 136
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: D1J745_ECTSI (50S ribosomal protein L16, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J745_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 3.540e-86
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPKKTKFRKQHRGRLKGKASRGN+INFGDYA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVA+VKPGHILFEL GVP KLAKEAL+IASYKLPIKTKFL K
Sbjct:    1 MLSPKKTKFRKQHRGRLKGKASRGNSINFGDYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGHILFELGGVPAKLAKEALEIASYKLPIKTKFLKK 134
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A0R6M0J1_UNDPI (50S ribosomal protein L16, chloroplastic n=49 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M0J1_UNDPI)

HSP 1 Score: 248 bits (633), Expect = 5.650e-83
Identity = 123/132 (93.18%), Postives = 129/132 (97.73%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFL 396
            +LSPKKTKFRKQHRGRLKGKASRGN I+FGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKP+TARAAESRMGSGKGSV+YWVA+VKPG ILFELSGVPLKLAKEA+ IASYKLPIKTKFL
Sbjct:    1 MLSPKKTKFRKQHRGRLKGKASRGNKISFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPVTARAAESRMGSGKGSVDYWVAVVKPGTILFELSGVPLKLAKEAMIIASYKLPIKTKFL 132
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A8E5XRJ0_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ0_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 6.150e-79
Identity = 116/134 (86.57%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPK+TKFRKQHRGRLKGKA RGN INFG+YAIQALEP W+TSRQIEATRRTITRYTKRGGKLWIT+FPDKPITARAAESRMGSGKGSV+YWVA+VKPG ILFELSGV  K+AKEA++IASYKLPI+TKFL K
Sbjct:    1 MLSPKRTKFRKQHRGRLKGKACRGNKINFGNYAIQALEPAWITSRQIEATRRTITRYTKRGGKLWITIFPDKPITARAAESRMGSGKGSVDYWVAVVKPGSILFELSGVSPKIAKEAMKIASYKLPIRTKFLMK 134
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A2I4Q2I6_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I6_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 8.450e-79
Identity = 119/134 (88.81%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPKKTKF+KQ RGRLKGKAS GNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKG+++YWVA VKPG ILFELSGV   LAKEA++IASYKLPIKTKF+TK
Sbjct:    1 MLSPKKTKFKKQQRGRLKGKASSGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGALDYWVAKVKPGTILFELSGVNPTLAKEAMKIASYKLPIKTKFITK 134
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A8E5BFH8_9PHAE (Ribosomal protein L16 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BFH8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.490e-78
Identity = 115/134 (85.82%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPKKT F+KQHRGRLKGKASR NTI+FGDYAIQALEP WLTSRQIEATRRTITRYTKRGGKLWI VFPDKPITAR  ESRMGSGKGSV+YWVAI+KPG +LFELSGVP+ +AKEA++IASYKLPIKTKFL K
Sbjct:    1 MLSPKKTNFKKQHRGRLKGKASRNNTIHFGDYAIQALEPVWLTSRQIEATRRTITRYTKRGGKLWIKVFPDKPITARVPESRMGSGKGSVDYWVAIIKPGTVLFELSGVPINIAKEAMKIASYKLPIKTKFLIK 134
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: B2XTE8_HETAK (50S ribosomal protein L16, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE8_HETAK)

HSP 1 Score: 235 bits (600), Expect = 6.710e-78
Identity = 112/134 (83.58%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +L PK+TKFRKQHRGRLKGKA RGN I++GDYA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKP+T RAAESRMGSGKG+VEYWVA+VKPG ILFE+SGVPL+LAK A++ ASYKLP+KTKF+T+
Sbjct:    1 MLLPKRTKFRKQHRGRLKGKACRGNKISYGDYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPVTFRAAESRMGSGKGAVEYWVAVVKPGKILFEMSGVPLELAKAAMKTASYKLPVKTKFITR 134
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A1G4NTX4_9FLOR (50S ribosomal protein L16, chloroplastic n=2 Tax=Liagoraceae TaxID=31484 RepID=A0A1G4NTX4_9FLOR)

HSP 1 Score: 234 bits (597), Expect = 1.920e-77
Identity = 109/134 (81.34%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPK+TKFRKQHRGRLKGKAS+GNTI+FGDYA+QALEP WLTSRQIEATRRTITRY KRGGKLWI VFPDKP+TAR AE+RMGSGKG+ EYWVA++KPGHILFE++GVP K AK+A+++ASYKLPIKTKF+T+
Sbjct:    1 MLSPKRTKFRKQHRGRLKGKASKGNTISFGDYALQALEPVWLTSRQIEATRRTITRYVKRGGKLWIRVFPDKPVTARPAETRMGSGKGAPEYWVAVIKPGHILFEMNGVPEKAAKQAMKLASYKLPIKTKFITR 134
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BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: A0A1G4P0N4_9FLOR (50S ribosomal protein L16, chloroplastic n=21 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1G4P0N4_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 4.990e-77
Identity = 109/134 (81.34%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPK+TKFRKQHRGR+KGKASRGNTI FGDYA+QALEP WLTSRQIEATRRTITRY KRGGKLWI VFPDKP+TAR AE+RMGSGKG+ EYWVA++KPGHILFE++GVP K AKEA+ +ASYKLPI+TKF+T+
Sbjct:    1 MLSPKRTKFRKQHRGRMKGKASRGNTIAFGDYALQALEPVWLTSRQIEATRRTITRYVKRGGKLWIRVFPDKPVTARPAETRMGSGKGAPEYWVAVIKPGHILFEINGVPEKAAKEAMNLASYKLPIRTKFITR 134
[Close]
BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Match: M4IU60_CALTB (50S ribosomal protein L16, chloroplastic n=4 Tax=Corallinoideae TaxID=48611 RepID=M4IU60_CALTB)

HSP 1 Score: 232 bits (592), Expect = 1.080e-76
Identity = 109/134 (81.34%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            +LSPKKTKFRKQHRGRL+GKAS+GN I+FGDYA+QALEP WLTSRQIEATRRTITRY +RGGKLWI VFPDKP+TARAAE+RMGSGKG+ EYWVA++KPGHILFE++GVP K AK+A+++ASYKLPIKTKF+TK
Sbjct:    1 MLSPKKTKFRKQHRGRLRGKASKGNYISFGDYALQALEPVWLTSRQIEATRRTITRYVRRGGKLWIRVFPDKPVTARAAETRMGSGKGAPEYWVAVIKPGHILFEMNGVPEKDAKQAMKLASYKLPIKTKFITK 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56149.13141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVW6_9PHAE2.370e-8995.5950S ribosomal protein L16, chloroplastic n=1 Tax=P... [more]
D1J745_ECTSI3.540e-8694.0350S ribosomal protein L16, chloroplastic n=6 Tax=P... [more]
A0A0R6M0J1_UNDPI5.650e-8393.1850S ribosomal protein L16, chloroplastic n=49 Tax=... [more]
A0A8E5XRJ0_9PHAE6.150e-7986.5750S ribosomal protein L16, chloroplastic n=1 Tax=I... [more]
A0A2I4Q2I6_9PHAE8.450e-7988.8150S ribosomal protein L16, chloroplastic n=1 Tax=D... [more]
A0A8E5BFH8_9PHAE1.490e-7885.82Ribosomal protein L16 n=1 Tax=Phaeophyceae sp. Tax... [more]
B2XTE8_HETAK6.710e-7883.5850S ribosomal protein L16, chloroplastic n=2 Tax=H... [more]
A0A1G4NTX4_9FLOR1.920e-7781.3450S ribosomal protein L16, chloroplastic n=2 Tax=L... [more]
A0A1G4P0N4_9FLOR4.990e-7781.3450S ribosomal protein L16, chloroplastic n=21 Tax=... [more]
M4IU60_CALTB1.080e-7681.3450S ribosomal protein L16, chloroplastic n=4 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56149contigH-paniculata_contig56149:644..1054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue9e-66
Seed eggNOG ortholog2880.D1J745
Preferred nameMRPL16
KEGG koko:K02874,ko:K02878,ko:K10756
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00178,M00179,M00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000048,GO:0000313,GO:0000314,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005763,GO:0005829,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019843,GO:0019866,GO:0022411,GO:0022625,GO:0022626,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0197@1,KOG3422@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.2259796-CDS-H-paniculata_contig56149:643..10541622930597.2259796-CDS-H-paniculata_contig56149:643..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56149 644..1054 -
1691481365.1437116-CDS-H-paniculata_contig56149:643..10541691481365.1437116-CDS-H-paniculata_contig56149:643..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56149 644..1054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56149.13141.1prot_H-paniculata_contig56149.13141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56149 644..1054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56149.13141.1

>prot_H-paniculata_contig56149.13141.1 ID=prot_H-paniculata_contig56149.13141.1|Name=mRNA_H-paniculata_contig56149.13141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
VLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEAT
RRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAIVKPG
HILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN*
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mRNA from alignment at H-paniculata_contig56149:644..1054-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56149.13141.1 ID=mRNA_H-paniculata_contig56149.13141.1|Name=mRNA_H-paniculata_contig56149.13141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig56149:644..1054- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTGAGTCCTAAAAAAACAAAATTTAGAAAACAACACCGTGGTAGATT
AAAAGGTAAGGCATCAAGAGGAAATACTATTAATTTTGGAGATTATGCTA
TTCAGGCTTTAGAACCTACTTGGTTAACTTCCCGTCAAATTGAGGCTACC
CGAAGAACGATAACTAGATACACAAAGCGTGGTGGAAAATTGTGGATAAC
AGTTTTCCCAGACAAACCAATAACTGCTAGAGCTGCTGAATCCAGAATGG
GATCAGGAAAAGGGTCCGTTGAATATTGGGTGGCTATAGTAAAACCTGGT
CATATCTTGTTTGAGTTGAGTGGGGTCCCTTTAAAACTTGCAAAGGAAGC
ATTGCAAATTGCTTCTTATAAGTTACCAATTAAAACGAAATTCTTGACAA
AGATAAATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig56149:644..1054-

>mRNA_H-paniculata_contig56149.13141.1 ID=mRNA_H-paniculata_contig56149.13141.1|Name=mRNA_H-paniculata_contig56149.13141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig56149:644..1054- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTGAGTCCTAAAAAAACAAAATTTAGAAAACAACACCGTGGTAGATT
AAAAGGTAAGGCATCAAGAGGAAATACTATTAATTTTGGAGATTATGCTA
TTCAGGCTTTAGAACCTACTTGGTTAACTTCCCGTCAAATTGAGGCTACC
CGAAGAACGATAACTAGATACACAAAGCGTGGTGGAAAATTGTGGATAAC
AGTTTTCCCAGACAAACCAATAACTGCTAGAGCTGCTGAATCCAGAATGG
GATCAGGAAAAGGGTCCGTTGAATATTGGGTGGCTATAGTAAAACCTGGT
CATATCTTGTTTGAGTTGAGTGGGGTCCCTTTAAAACTTGCAAAGGAAGC
ATTGCAAATTGCTTCTTATAAGTTACCAATTAAAACGAAATTCTTGACAA
AGATAAATTAAGTGCTGAGTCCTAAAAAAACAAAATTTAGAAAACAACAC
CGTGGTAGATTAAAAGGTAAGGCATCAAGAGGAAATACTATTAATTTTGG
AGATTATGCTATTCAGGCTTTAGAACCTACTTGGTTAACTTCCCGTCAAA
TTGAGGCTACCCGAAGAACGATAACTAGATACACAAAGCGTGGTGGAAAA
TTGTGGATAACAGTTTTCCCAGACAAACCAATAACTGCTAGAGCTGCTGA
ATCCAGAATGGGATCAGGAAAAGGGTCCGTTGAATATTGGGTGGCTATAG
TAAAACCTGGTCATATCTTGTTTGAGTTGAGTGGGGTCCCTTTAAAACTT
GCAAAGGAAGCATTGCAAATTGCTTCTTATAAGTTACCAATTAAAACGAA
ATTCTTGACAAAGATAAATTAA
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