mRNA_H-paniculata_contig56141.13139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56141.13139.1
Unique NamemRNA_H-paniculata_contig56141.13139.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56141.13139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56141contigH-paniculata_contig56141:21..1047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size424
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56141.13139.1prot_H-paniculata_contig56141.13139.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56141 350..1047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.0787942-UTR-H-paniculata_contig56141:20..691622930597.0787942-UTR-H-paniculata_contig56141:20..69Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56141 21..69 -
1691481365.0776842-UTR-H-paniculata_contig56141:20..691691481365.0776842-UTR-H-paniculata_contig56141:20..69Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56141 21..69 -
1622930597.0925179-UTR-H-paniculata_contig56141:317..3491622930597.0925179-UTR-H-paniculata_contig56141:317..349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56141 318..349 -
1691481365.0884302-UTR-H-paniculata_contig56141:317..3491691481365.0884302-UTR-H-paniculata_contig56141:317..349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56141 318..349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.1048646-CDS-H-paniculata_contig56141:349..5421622930597.1048646-CDS-H-paniculata_contig56141:349..542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56141 350..542 -
1691481365.0980866-CDS-H-paniculata_contig56141:349..5421691481365.0980866-CDS-H-paniculata_contig56141:349..542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56141 350..542 -
1622930597.118966-CDS-H-paniculata_contig56141:567..6871622930597.118966-CDS-H-paniculata_contig56141:567..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56141 568..687 -
1691481365.1083958-CDS-H-paniculata_contig56141:567..6871691481365.1083958-CDS-H-paniculata_contig56141:567..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56141 568..687 -
1622930597.1356473-CDS-H-paniculata_contig56141:1018..10471622930597.1356473-CDS-H-paniculata_contig56141:1018..1047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56141 1019..1047 -
1691481365.119618-CDS-H-paniculata_contig56141:1018..10471691481365.119618-CDS-H-paniculata_contig56141:1018..1047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56141 1019..1047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56141.13139.1

>prot_H-paniculata_contig56141.13139.1 ID=prot_H-paniculata_contig56141.13139.1|Name=mRNA_H-paniculata_contig56141.13139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
ENAAEFLIRRFTDAGDAVLSSSADRDNDLSWKVLKEGRTLVALVPELSRL
LPAARTPGQGCGRRCYRRTSPRKWWEVNSYPSTSRSPTFHTPYTRRWRPD
RTERMAPLPGRSP*
back to top

mRNA from alignment at H-paniculata_contig56141:21..1047-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56141.13139.1 ID=mRNA_H-paniculata_contig56141.13139.1|Name=mRNA_H-paniculata_contig56141.13139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-paniculata_contig56141:21..1047- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAACGCGGCAGAGTTTCTGATCCGACGGTAAGGATACGATGGGGGGGT
CGTTCTTTTGGCTATTCTTGGTGTCTGCCTTTAGTCTAATTTTGCTGTTT
TTAGGGCCGTCTTGCCGTTGCTGTGTGTTCGCCCGTTGTATTTTTCTATA
GCACTGTTGAATACGATAGCAAGGTGGTTGTTGTATTCAACATGCTACTC
CGTGCAGTTCAGCTCATCAAACTGAAAATACCGCGCCTCCGCCACTGCAA
AATCGATCGCATCAGTGATTTGATATGTGATGTACTCTACTACCTCTATT
CGTTATACTCGTGTTTTTACAGAGGTGTTCATCATTCCCCCTTCCCCCAA
TTTTAACCAGATTTACGGATGCGGGTGATGCGGTCCTATCTTCTTCCGCT
GATCGAGACAACGACCTCTCGTGGAAGGTGCTTAAGGAGGGCCGGACCCT
TGTCGCACTCGTGCCCGAACTTTCGAGGCTCCAACCTGTAACTGATGACT
TGGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTGGTCGAAGATG
CTATCGGCGGACAAGCCCCAGAAAATGGTGGGAAGTAAACTCCTACCCAT
CAACGTCCCGGAGTCCAACGTTCCACACGCCATACACGAGGAGATGGCGT
CCAGACAGAACGGAGCGGATGGCTCCCCTGCCCGGCAGGTCGCCATGATG
GCGGCTGCTGTCAAGGGCCTCGAGATAAAGGTATGTACCTCGATTAGAGC
TGTGCATGGGACAGCCGGACTTCATGTTGTGCGATTATCGGGGCTTGTTT
GCTGTTGCTGAATAGTGGTATATACCATGTATATATTTGAGCTTATGTGT
GAATCGGGTGGAAAGTCTAAGTTAAGTACTTAGCCGACCTCCTCCGCCAC
CATGTGATCACACTAATTACGAACTCGCTTGTGACGCCTTTCCACCCTTC
CGTCCGATATATTCACCTTTCGTTACAGGAGTCTGACATTCATGGCGTTG
GGCTGTTTGCGATCAACGACATGGATG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig56141:21..1047-

>mRNA_H-paniculata_contig56141.13139.1 ID=mRNA_H-paniculata_contig56141.13139.1|Name=mRNA_H-paniculata_contig56141.13139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig56141:21..1047- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAACGCGGCAGAGTTTCTGATCCGACGGAAAACGCGGCAGAGTTTCTG
ATCCGACGATTTACGGATGCGGGTGATGCGGTCCTATCTTCTTCCGCTGA
TCGAGACAACGACCTCTCGTGGAAGGTGCTTAAGGAGGGCCGGACCCTTG
TCGCACTCGTGCCCGAACTTTCGAGGCTATTTACGGATGCGGGTGATGCG
GTCCTATCTTCTTCCGCTGATCGAGACAACGACCTCTCGTGGAAGGTGCT
TAAGGAGGGCCGGACCCTTGTCGCACTCGTGCCCGAACTTTCGAGGCTGC
TGCCTGCCGCGAGAACACCCGGACAGGGCTGTGGTCGAAGATGCTATCGG
CGGACAAGCCCCAGAAAATGGTGGGAAGTAAACTCCTACCCATCAACGTC
CCGGAGTCCAACGTTCCACACGCCATACACGAGGAGATGGCGTCCAGACA
GAACGGAGCGGATGGCTCCCCTGCCCGGCAGGTCGCCATGAGCTGCCTGC
CGCGAGAACACCCGGACAGGGCTGTGGTCGAAGATGCTATCGGCGGACAA
GCCCCAGAAAATGGTGGGAAGTAAACTCCTACCCATCAACGTCCCGGAGT
CCAACGTTCCACACGCCATACACGAGGAGATGGCGTCCAGACAGAACGGA
GCGGATGGCTCCCCTGCCCGGCAGGTCGCCATGA
back to top