mRNA_H-paniculata_contig5614.13136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5614.13136.1
Unique NamemRNA_H-paniculata_contig5614.13136.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5614.13136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5614contigH-paniculata_contig5614:4694..6267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size520
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5614.13136.1prot_H-paniculata_contig5614.13136.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5614 4694..6266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.800988-CDS-H-paniculata_contig5614:4693..47381622930596.800988-CDS-H-paniculata_contig5614:4693..4738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 4694..4738 +
1691481364.9690697-CDS-H-paniculata_contig5614:4693..47381691481364.9690697-CDS-H-paniculata_contig5614:4693..4738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 4694..4738 +
1622930596.8127484-CDS-H-paniculata_contig5614:5193..54501622930596.8127484-CDS-H-paniculata_contig5614:5193..5450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 5194..5450 +
1691481364.9775953-CDS-H-paniculata_contig5614:5193..54501691481364.9775953-CDS-H-paniculata_contig5614:5193..5450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 5194..5450 +
1622930596.8288736-CDS-H-paniculata_contig5614:6049..62661622930596.8288736-CDS-H-paniculata_contig5614:6049..6266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 6050..6266 +
1691481364.9854681-CDS-H-paniculata_contig5614:6049..62661691481364.9854681-CDS-H-paniculata_contig5614:6049..6266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 6050..6266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5614.13136.1

>prot_H-paniculata_contig5614.13136.1 ID=prot_H-paniculata_contig5614.13136.1|Name=mRNA_H-paniculata_contig5614.13136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
RSSLSSSSGGHGALKVLGNMSLPMSTFRRKKITRSASLEEDEDLAQRRRA
ASVGAGSRKEGGPGRGRESSAPMAGYVRSQSVTDDALTQRRIESDADCSA
STDLELEFPTERARRKGIVSRMRRMGSNVIRFRGSGSSSSKQSTPVGRDS
NSNTSAQGFSHTVPEGSVGGANS
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mRNA from alignment at H-paniculata_contig5614:4694..6267+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5614.13136.1 ID=mRNA_H-paniculata_contig5614.13136.1|Name=mRNA_H-paniculata_contig5614.13136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1574bp|location=Sequence derived from alignment at H-paniculata_contig5614:4694..6267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCTTCGCTGTCGTCTTCTAGCGGCGGTCACGGCGCTTTGAAGGTGTG
TGTGGTAGTGGTGGGGATAGAGAGGGAGCCGGGGCGCGCGCGCGGGGGGA
GGGGTTACCATACAACGATAGACCAGGTGTTTCAAATAGTATTTGGGGGT
ATGACCGGTTTTGAATAATAAGCGTGAATGAAGCAGGTAGAAGTGTTGAA
TATTTAATCCTGGCGAAGTATACAAAACCACACATAAGCGTCGAAGGTGT
AACCGTTTCAATCGCCCATCCGACGACGCCCGACAGAACAGCAGCACACG
CCTATCCCATAACTTGTTATCGTCGGATAGTAGGTACCACCTCTCTGTTG
AGGGAGAAGACCTTGACCACAAGTTCTGAGCACTTTCAAATAAATATATT
GTAGAACCATGGCCAAAAGGGGTATTCCATTCCTCCGCTATTACCCCGAT
AACAGTGTACGTGTTCTATCAACATTTGATGCGTCACGCGTGTGCTGCAG
GTACTCGGAAATATGAGCTTACCCATGTCCACCTTCCGCCGCAAAAAGAT
CACGCGTTCGGCATCGTTAGAGGAAGACGAAGACCTCGCGCAACGGCGGC
GAGCGGCATCGGTCGGCGCGGGGTCAAGAAAGGAGGGCGGACCTGGTAGG
GGAAGGGAAAGCAGCGCACCTATGGCAGGCTATGTGAGGTCGCAGTCTGT
GACGGATGATGCCTTGACGCAGCGGCGTATCGAATCTGATGCGGATTGTT
CGGCGAGGTGACGAAGTGTTGATATCAAAGCGATTTTAGATGGCCAAAAC
GCTCTTTCCTACGGTGCCCAAATATTGGTCAAGAATGTTGCTCACCTCTG
GTATTTTCAGGCTAATTTCTAGTTTCCATAACCGCTAACGGATTCTTTTA
GTAACCTGGCCCAAGGGGAGTTAGTGTTGAGCATTCCTGGTTTTTGTTAG
CGTAAAGTCGTTGCTTGTGGTCGCCAAATTCATGCTCGACTCCAGAAACT
TGACTTTTTCCCTCAGTAGTTAGTGAAAAAACAATCTGATGCCCTAAATT
CAATTTGATTTCCTACTCCCATGAGAAATGATATGAAATATGGACATGTG
TTTTTCCTTTCACTTGAGAGCGTTAAACATTCTTCGCAATATATGCTCCG
TACGCTCCATTCCCACACCGCGGTCATTGGAAACGATGTCTACTAGAGAC
AGAAGATCAGTGTAATGTCTTGGAGGCCTGAGAGCGAGGCACGAAGAGCC
ATCTTGAAGTCCGTGTTTTCTTCGTATTCTACGCTATAGAGGAGGAGTCT
TGTTCACCGTTCCCCCTACGTCTCCCCCCCCCCTCCATCTAATTCTCACT
TCGCAGCACTGACCTCGAGCTCGAGTTTCCCACGGAGCGTGCTCGACGAA
AGGGGATCGTGTCGCGCATGCGCCGGATGGGCTCCAACGTTATACGCTTC
CGTGGCAGCGGATCGTCGTCCAGCAAGCAGAGCACTCCTGTCGGCCGCGA
CTCAAACAGCAACACTTCCGCTCAAGGGTTCAGTCACACCGTTCCGGAAG
GCAGTGTTGGCGGCGCCAACAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5614:4694..6267+

>mRNA_H-paniculata_contig5614.13136.1 ID=mRNA_H-paniculata_contig5614.13136.1|Name=mRNA_H-paniculata_contig5614.13136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig5614:4694..6267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCTTCGCTGTCGTCTTCTAGCGGCGGTCACGGCGCTTTGAAGAGGTC
TTCGCTGTCGTCTTCTAGCGGCGGTCACGGCGCTTTGAAGGTACTCGGAA
ATATGAGCTTACCCATGTCCACCTTCCGCCGCAAAAAGATCACGCGTTCG
GCATCGTTAGAGGAAGACGAAGACCTCGCGCAACGGCGGCGAGCGGCATC
GGTCGGCGCGGGGTCAAGAAAGGAGGGCGGACCTGGTAGGGGAAGGGAAA
GCAGCGCACCTATGGCAGGCTATGTGAGGTCGCAGTCTGTGACGGATGAT
GCCTTGACGCAGCGGCGTATCGAATCTGATGCGGATTGTTCGGCGAGGTA
CTCGGAAATATGAGCTTACCCATGTCCACCTTCCGCCGCAAAAAGATCAC
GCGTTCGGCATCGTTAGAGGAAGACGAAGACCTCGCGCAACGGCGGCGAG
CGGCATCGGTCGGCGCGGGGTCAAGAAAGGAGGGCGGACCTGGTAGGGGA
AGGGAAAGCAGCGCACCTATGGCAGGCTATGTGAGGTCGCAGTCTGTGAC
GGATGATGCCTTGACGCAGCGGCGTATCGAATCTGATGCGGATTGTTCGG
CGAGCACTGACCTCGAGCTCGAGTTTCCCACGGAGCGTGCTCGACGAAAG
GGGATCGTGTCGCGCATGCGCCGGATGGGCTCCAACGTTATACGCTTCCG
TGGCAGCGGATCGTCGTCCAGCAAGCAGAGCACTCCTGTCGGCCGCGACT
CAAACAGCAACACTTCCGCTCAAGGGTTCAGTCACACCGTTCCGGAAGGC
AGTGTTGGCGGCGCCAACAGCCACTGACCTCGAGCTCGAGTTTCCCACGG
AGCGTGCTCGACGAAAGGGGATCGTGTCGCGCATGCGCCGGATGGGCTCC
AACGTTATACGCTTCCGTGGCAGCGGATCGTCGTCCAGCAAGCAGAGCAC
TCCTGTCGGCCGCGACTCAAACAGCAACACTTCCGCTCAAGGGTTCAGTC
ACACCGTTCCGGAAGGCAGTGTTGGCGGCGCCAACAGC
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