mRNA_H-paniculata_contig5614.13135.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5614.13135.1
Unique NamemRNA_H-paniculata_contig5614.13135.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5614.13135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5614contigH-paniculata_contig5614:3574..4740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.6746674-CDS-H-paniculata_contig5614:3573..38271622930596.6746674-CDS-H-paniculata_contig5614:3573..3827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 3574..3827 +
1691481364.928559-CDS-H-paniculata_contig5614:3573..38271691481364.928559-CDS-H-paniculata_contig5614:3573..3827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 3574..3827 +
1622930596.6924107-CDS-H-paniculata_contig5614:4338..47381622930596.6924107-CDS-H-paniculata_contig5614:4338..4738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 4339..4738 +
1691481364.9370444-CDS-H-paniculata_contig5614:4338..47381691481364.9370444-CDS-H-paniculata_contig5614:4338..4738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 4339..4738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5614.13135.1prot_H-paniculata_contig5614.13135.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5614 3574..4738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5614.13135.1

>prot_H-paniculata_contig5614.13135.1 ID=prot_H-paniculata_contig5614.13135.1|Name=mRNA_H-paniculata_contig5614.13135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
RSVEVNGGPGEGHGGVGTEGRSSCYLSDEPGALSSNNSPVPGELVQGGHK
LSRSSGSSSVGSGVNVSDNGEFTCGGSVGTNDSYRAPSVRTSPRDVMSRH
KAEALYRVGGTEPPHAAVGNIEVGILKVVRKPGASFLHCSDTDRSQSVDS
HLRTRSVKSDNGTPLRGDPRVPDGSVRRASGSSSCGGGGGAANLGESGAA
GGDRSSLSSSSGGHGALK
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mRNA from alignment at H-paniculata_contig5614:3574..4740+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5614.13135.1 ID=mRNA_H-paniculata_contig5614.13135.1|Name=mRNA_H-paniculata_contig5614.13135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-paniculata_contig5614:3574..4740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTCCGTCGAGGTGAACGGCGGTCCTGGAGAAGGGCATGGTGGTGTTGG
GACCGAGGGTAGGAGCAGCTGCTACCTCTCTGATGAGCCTGGCGCTCTTA
GCTCGAACAACAGTCCCGTGCCAGGGGAGCTAGTGCAGGGCGGGCACAAA
CTGAGTCGATCCAGTGGTAGTTCGTCGGTGGGCAGCGGCGTCAATGTCAG
CGATAACGGAGAGTTTACGTGTGGAGGGAGTGTTGGTACGAACGACAGCT
ACAGGTGAGAGAGCGGGGAGTGATGGCGGTATATAGGGGGCGTGGCAGTA
ATAGTTCCAACCGCGGTTTGTTTGTGGTATTTGGGGTCTAGGGACTTGGA
ACGTTTGTGTGGTGAGTGCTGTCAGCAAGCTGAGCTTTTTCTGCTGGTGT
TTTTTGTTTTTGGAGTCGGGCCATTTTTTTTTTTTTTCTCGTCAGGACTG
TGATTGGTGTTTTTGTCCCGACATGTTGGTGCCATGTGGCCTATTTTGAG
TTATCTGTTTTTATCTGAGACTCGATCTATCCTGCGAGAAGTCAACACGT
TCTATCTATTATGGTCCTCTGTGATGATGTAATTCCTAAACATGAAATTT
ACTGAAGTCGACAGAGCGGATTACGTACGTCATCCCTCAAAATGGCCAAG
ACAAAGTATACACCACTCGACTAAAACTATTATGAACAATGCATCGTGGG
ATATGTGCAACCCTTCTGCTGCTGCTGACGCCGCTCTCCCATATACCTAT
CCTACTCCCCAGCAGGGCTCCGAGCGTACGGACCTCCCCCCGTGACGTCA
TGTCGCGGCACAAGGCCGAGGCGCTGTATCGCGTCGGCGGTACGGAGCCT
CCACATGCCGCAGTAGGCAACATCGAGGTGGGAATCTTGAAGGTCGTAAG
AAAACCCGGCGCCTCCTTCCTCCACTGCTCCGACACGGACCGCTCGCAGT
CGGTGGACAGCCATCTACGCACACGAAGCGTGAAGTCGGACAACGGTACG
CCGCTGCGCGGCGACCCGCGCGTCCCCGACGGTAGCGTACGAAGAGCGTC
AGGTAGCAGCAGTTGCGGTGGCGGCGGGGGAGCGGCCAACTTGGGTGAGA
GCGGGGCGGCTGGAGGCGACAGGTCTTCGCTGTCGTCTTCTAGCGGCGGT
CACGGCGCTTTGAAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5614:3574..4740+

>mRNA_H-paniculata_contig5614.13135.1 ID=mRNA_H-paniculata_contig5614.13135.1|Name=mRNA_H-paniculata_contig5614.13135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig5614:3574..4740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTCCGTCGAGGTGAACGGCGGTCCTGGAGAAGGGCATGGTGGTGTTGG
GACCGAGGGTAGGAGCAGCTGCTACCTCTCTGATGAGCCTGGCGCTCTTA
GCTCGAACAACAGTCCCGTGCCAGGGGAGCTAGTGCAGGGCGGGCACAAA
CTGAGTCGATCCAGTGGTAGTTCGTCGGTGGGCAGCGGCGTCAATGTCAG
CGATAACGGAGAGTTTACGTGTGGAGGGAGTGTTGGTACGAACGACAGCT
ACAGCGGTCCGTCGAGGTGAACGGCGGTCCTGGAGAAGGGCATGGTGGTG
TTGGGACCGAGGGTAGGAGCAGCTGCTACCTCTCTGATGAGCCTGGCGCT
CTTAGCTCGAACAACAGTCCCGTGCCAGGGGAGCTAGTGCAGGGCGGGCA
CAAACTGAGTCGATCCAGTGGTAGTTCGTCGGTGGGCAGCGGCGTCAATG
TCAGCGATAACGGAGAGTTTACGTGTGGAGGGAGTGTTGGTACGAACGAC
AGCTACAGGGCTCCGAGCGTACGGACCTCCCCCCGTGACGTCATGTCGCG
GCACAAGGCCGAGGCGCTGTATCGCGTCGGCGGTACGGAGCCTCCACATG
CCGCAGTAGGCAACATCGAGGTGGGAATCTTGAAGGTCGTAAGAAAACCC
GGCGCCTCCTTCCTCCACTGCTCCGACACGGACCGCTCGCAGTCGGTGGA
CAGCCATCTACGCACACGAAGCGTGAAGTCGGACAACGGTACGCCGCTGC
GCGGCGACCCGCGCGTCCCCGACGGTAGCGTACGAAGAGCGTCAGGTAGC
AGCAGTTGCGGTGGCGGCGGGGGAGCGGCCAACTTGGGTGAGAGCGGGGC
GGCTGGAGGCGACAGGTCTTCGCTGTCGTCTTCTAGCGGCGGTCACGGCG
CTTTGAAGGGCTCCGAGCGTACGGACCTCCCCCCGTGACGTCATGTCGCG
GCACAAGGCCGAGGCGCTGTATCGCGTCGGCGGTACGGAGCCTCCACATG
CCGCAGTAGGCAACATCGAGGTGGGAATCTTGAAGGTCGTAAGAAAACCC
GGCGCCTCCTTCCTCCACTGCTCCGACACGGACCGCTCGCAGTCGGTGGA
CAGCCATCTACGCACACGAAGCGTGAAGTCGGACAACGGTACGCCGCTGC
GCGGCGACCCGCGCGTCCCCGACGGTAGCGTACGAAGAGCGTCAGGTAGC
AGCAGTTGCGGTGGCGGCGGGGGAGCGGCCAACTTGGGTGAGAGCGGGGC
GGCTGGAGGCGACAGGTCTTCGCTGTCGTCTTCTAGCGGCGGTCACGGCG
CTTTGAAG
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