mRNA_H-paniculata_contig5613.13133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5613.13133.1
Unique NamemRNA_H-paniculata_contig5613.13133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5613.13133.1 vs. uniprot
Match: D8LMF3_ECTSI (DUF676 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.580e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   28 MPVVGTVDVAVHLHRVHNIDLFCRGVYYLRTSLVLPAK 141
            MPVVGTVDVAVHLHRVHNIDLFCRGVYYLRTS++L +K
Sbjct:    1 MPVVGTVDVAVHLHRVHNIDLFCRGVYYLRTSVLLSSK 38
[Close]
BLAST of mRNA_H-paniculata_contig5613.13133.1 vs. uniprot
Match: A0A6P9D714_PANGU (protein FAM135B isoform X1 n=3 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9D714_PANGU)

HSP 1 Score: 48.5 bits (114), Expect = 6.910e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   34 VVGTVDVAVHLHRVHNIDLFCRGVYYLRTSLVLPAKV 144
            V GTV+ +V LH+ HN+DLF RG Y +RTSL + AK+
Sbjct:    4 VQGTVNFSVELHKFHNVDLFQRGYYLIRTSLKISAKI 40
[Close]
BLAST of mRNA_H-paniculata_contig5613.13133.1 vs. uniprot
Match: UPI00192FA6E1 (protein FAM135B isoform X1 n=3 Tax=Crotalinae TaxID=8710 RepID=UPI00192FA6E1)

HSP 1 Score: 48.5 bits (114), Expect = 6.910e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   34 VVGTVDVAVHLHRVHNIDLFCRGVYYLRTSLVLPAKV 144
            V GTV+ +V LH+ HN+DLF RG Y +RTSL + AK+
Sbjct:    4 VQGTVNFSVELHKFHNVDLFQRGYYLIRTSLKISAKI 40
[Close]
BLAST of mRNA_H-paniculata_contig5613.13133.1 vs. uniprot
Match: UPI000D6A095A (protein FAM135B n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A095A)

HSP 1 Score: 48.5 bits (114), Expect = 6.910e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   34 VVGTVDVAVHLHRVHNIDLFCRGVYYLRTSLVLPAKV 144
            V GT++ +V LH+ HN+DLF RG Y LRTSL + AK+
Sbjct:    4 VQGTINFSVELHKFHNVDLFQRGYYLLRTSLKVSAKI 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5613.13133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMF3_ECTSI1.580e-1489.47DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6P9D714_PANGU6.910e-556.76protein FAM135B isoform X1 n=3 Tax=Pantherophis gu... [more]
UPI00192FA6E16.910e-556.76protein FAM135B isoform X1 n=3 Tax=Crotalinae TaxI... [more]
UPI000D6A095A6.910e-556.76protein FAM135B n=1 Tax=Python bivittatus TaxID=17... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5613contigH-paniculata_contig5613:6088..11896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue8.9e-12
Seed eggNOG ortholog2880.D8LMF3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsKOG2205@1,KOG2205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size195
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5613.13133.1prot_H-paniculata_contig5613.13133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5613 6088..11869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.5085757-CDS-H-paniculata_contig5613:6087..61411622930596.5085757-CDS-H-paniculata_contig5613:6087..6141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5613 6088..6141 -
1691481364.8753612-CDS-H-paniculata_contig5613:6087..61411691481364.8753612-CDS-H-paniculata_contig5613:6087..6141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5613 6088..6141 -
1622930596.5235107-CDS-H-paniculata_contig5613:9028..91151622930596.5235107-CDS-H-paniculata_contig5613:9028..9115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5613 9029..9115 -
1691481364.885106-CDS-H-paniculata_contig5613:9028..91151691481364.885106-CDS-H-paniculata_contig5613:9028..9115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5613 9029..9115 -
1622930596.5392742-CDS-H-paniculata_contig5613:11842..118691622930596.5392742-CDS-H-paniculata_contig5613:11842..11869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5613 11843..11869 -
1691481364.8935094-CDS-H-paniculata_contig5613:11842..118691691481364.8935094-CDS-H-paniculata_contig5613:11842..11869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5613 11843..11869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.5594728-UTR-H-paniculata_contig5613:11869..118961622930596.5594728-UTR-H-paniculata_contig5613:11869..11896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5613 11870..11896 -
1691481364.9014778-UTR-H-paniculata_contig5613:11869..118961691481364.9014778-UTR-H-paniculata_contig5613:11869..11896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5613 11870..11896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5613.13133.1

>prot_H-paniculata_contig5613.13133.1 ID=prot_H-paniculata_contig5613.13133.1|Name=mRNA_H-paniculata_contig5613.13133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MPVVGTVDVAVHLHRVHNIDLFCRGVYYLRTSLVLPAKVTGGDAINIPPR
NDGGNG
back to top

mRNA from alignment at H-paniculata_contig5613:6088..11896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5613.13133.1 ID=mRNA_H-paniculata_contig5613.13133.1|Name=mRNA_H-paniculata_contig5613.13133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5809bp|location=Sequence derived from alignment at H-paniculata_contig5613:6088..11896- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGGAAGGCGGCCGTCCAGAGAAGATGCCTGTCGTCGGTACTGTTGA
CGTGGTAAGCAAAGGCCTTCGTTATATTGTGTTTAGATTTGCTGAATTGA
CCTATACTTTGCATGCTGTTTCATTTTCCCTGGGCGTCTCTCTCTTGCTG
GTTTCCGAAATGTTATTCTGAGATTGCACCGTCTGTTCTCTTCTGTCTGT
ACTTCCCTGAGAGCGGATGTTTTTCGTTACTCGTGGCAAGGCCTTCATAC
GCTAAATATAGCAATCCCGGCACACCGACACGTGTACTTGCTCGAGCCAA
GTGTAACTGGTCCCTAGCTCTTTTGAACAAGGACCATAGAGGTACCCATC
TCGACCTTACTGGTTGAGTCGAGGTACTGTCGTGGGGAAATGGTCTCACA
AGACTTTTGAACTTTGCCCGATTTCAGGGGGCGCATTTCATGTGTGGAGC
TTGGTGAGAAGGAATGATTGTCATTCCCGTCTGCAAAGTTCCGTCGGCAC
ACAGACAATAGTGCTTCCTTTGTCATGGGTTGCAGTAAATGTTGTGTATG
TGGGACTCATACTCTAATGGGTTTGGTTGCTGAACGTGGAGTGTATGTAG
TCAAGGAGTAATAGCCCACATCAATCACGGTTCATGTTGTCTACGCTCTG
GTCGCAAGGGGTGCTTTCGGCTTGGTTAAAGGTTCTTTCTATACAAGTAC
AGTATCAGCTGTTTCGCCTTGGTTCTCTCTCCCAAGAGAACAGTACAACA
CTTGCGTCTGTCGCACCTCTACAGACAGTATTAGCAGTAAGCCGGCCTGT
CGAAACCGTATTCCTGACTGGACTAAATACCATCCCAGTGCAGTACCTAC
TACGGTACGCATGCAGTCAAACAGTATACACTACTCAAGCACTACTTCTG
AAAACGGAAATCAGCAGGAGTACTACGGTTACAGGTCATTGCACCGACCG
ACCCTTGGCACACGACAAAAATGGGGCACAGTTTTGGAACCTTCAAATAA
CCCAATAGCAGTAGGCACCAACTGTTACCGTAGCGTGTGGGAGTTCCATA
TGTTGTGTTGTTGTTCCTGCGTCCTAAAGACGAGCCACCCCGAATATAAA
TTGAACTGGTACATATACATCTCGTCCCTGATTTGTTCTGTGATTTGTAT
TCTGTGAATGTGTAATACTGTCTGTTGTTTTGTGTCATCTTCCGTTGTTG
TTCGATTTGACCCTTTCTGACAGCCCATACTTACTGTTTCTCACGTACAT
GTGAGACGTGCTATTTGGTTGTCTGTATACAATAGAGCTCAAACTTATGT
CCTGTCCGTAGCGATTATCTGTTCATTGTTTTGAAAGAAAATACAAAGTA
CCTTTGTTGTCGCCGGTTGTACTTAGTTCGTAACAAAAATCACGGAAGGT
ATCTTTTAGGCCAAAAGACATATTAAGGTATACCTGGACAGTTTTCGGAC
AGAAGCAGGTGTAGTATCAACGAGCATTGTAGCGCCGCCCAAATATGGTC
ATGTGATTGGCTGAGACAGCCCTGTACCTGAACGTGGCCAAAATGCACGC
TAGTGCACCTGAATTTATCTACTTTTCCCCACAGCCTACGGCTGGACCTC
GGCAATTACCTGAAACTGGCCAAAATTATAACTGAAATCAGAACCCACTA
TCCCTGCAACAATTGGCAAAAATTGTTCGACCGTGCCACAAGAGAACCGT
TTCTGTTTGCTGTCACAATTTCCGCACCTGACGCCTTTGCCATTGCGCGG
CAGCTCACGCGTTACGGAGGCTTCCAGCAATAGAGTGTCCCTAATCCTTT
GCCCTATCTCAACCAGCACGAATTCCGCCATGACCTCACAACCTCTCCTG
CTACACAAACCTTAGTCCTAACTTACGACGAGGTGGTATTTTTGAAAGGC
TGGCGGGGTGGGTGATGGGCTATTGTCGTTCGTGGATCCCTAACATGCAT
CTATATGCCTGTCTCAGGGTGATTTATGTGGCTGTTTCGTAAGGTCGAAC
AGTTTTTGGCCCATCAAGTATTCGAGGATACATGCCGCACGTTGGTGGGT
GTCGGAGATCAGGTTGACAAGAGAGTTGAGCAAATGGTACAAGCTGCCAC
TGTCTATTTTGCGGAGGGAAGGGAGATGGGGATGCCGGTGCGCTTATTGC
CACTGTTGCAGGGGTTGTTGGTTCTGATTTCAGGTACAATTTCTCCCAGT
TTCAGGTAATTGCCGACGTCCCGGTGTAGGCTGTTGGGAAAAGTAGACAC
TTCCAGGTCCACTAGCGTGCATTTTGGCCACGGTCGGGTACGGGGCTGTC
TCGGCCAATCAGTTGACCGTATTTGGGTGGCGCTATAATGCTCGTTGATA
ATACACCTGTTTCTGTCCGAAAACTGTCCGGGTGCACCTGAATATGTCTC
TCGCCTTATCTTTTATGTTGGTACCCCCTATTGTAGGACAAGTCTGGAGT
ATGACCAGATGAACGACTAGGCTATCTATATATGCCAATGAAGTCATAAT
TCAGTCCGTGCCTTGGTCTCCGACCCACGCATAACGTCTCGCTGCGCTCC
CACCAAGATTTTCATCTTTCAGAACTTACTTGAGCACAGACTTGAAAATA
AATGTTCCGGAATGATAACCCCGCGAATCAAGCGGTACGCGTAGTTTAAG
TGTGTACTCTGATTCGCAATGGTTGATGTGCGTGAATATCTTGACTCTTC
CCCCCCCCCCCCCTCCCCCTTCTTTTTCGCCCTCTTCTGCCTCTATGTGC
CTCACGTACCTTTACTTGTCCCGTCCGCCAGGCTGTCCATCTGCACCGTG
TCCACAATATTGATCTATTTTGCCGTGGAGTGTACTACCTTCGAACTTCG
CTGGTTCTACCGGCTAAGGTTGGTTGGTTGAGTGGTCTCCAACCGTCGTT
GATTTTGTATCGCATCCTGTTTTTTGAAGCAGTGTAAGTTAGCTATTTAT
TGACCGTGTGTTACCAACGTTTGATCGTTGCCTTGCATTTCAAGACTTAT
TTTTTTTTCAAGCAGTGATCATTTGTTCAGTTAACTATTATTATTGTTGT
TTTGATTATGTAAGCACATAAATTCTCGAGATAGCCGCGATGATCACGAG
GAGGCGTCGGCGGGGTCGCCCCTCTAAGAAAAAGCGGGTGAGGGGGGTTC
CAGCTGGGTCTCCGAAACCCAGTGAAAGGCTCGTTCTTTTGCGGGCGGGC
CAGTTTGAGCGAGTGCAAAGCACGGGGAGTGCCGTAGTGTGTCGGTCTGC
GAGGTTTAGCTCCGCGGGAAAAGGATTGCCCTCCGTCTATCCTCTCGCGC
GGTGATCGTGAAGTCCACCCGGCGACGGACCTCATGCTATCGTTTGGGCT
GATTGCTCCAATTCGGCCACGGCACGACCGATCGAGAAAACCTAGCTGAC
ACGGATCAATCTCCCCCCCCCCCGAAAGAAGAACGGAGAGACTCATAAAG
TCTCGTTGCTCACTCAGCGGGCGCAACTATCCCGCAACATGGCGTTCGCA
CAAACCGTTAAGGTCGCCGTCAGATTTTCTCGACAAGAAAGAACCTGCAA
TGTTGAACCTACAATGTTAAACGAACATGTCTGTCGCCAAGTCTTGAAGA
TATCCTCTTTCCAAGCAAACAACTTTCGGTATCACTAGCACCGAACCTTT
CAGAAAAATCGAGCCTGAAAAAAGAACGTCCCCGGAGCGTTCTCTCTGAC
CTTTGCGGGAAGTACGTGATCAAAAATGGCTCTTTCCTGATTGATTTTTG
TTGCTGTGCGAAGCGATTTTTTTTTTTTTTTGCGTGGCCATCTCTGTTGC
CGTTCGGTACAATGTTTTTCCTCGTACTGTCAACGGCCAAGGCATGAGAC
CCCTCCATCTTTACAAACAGTACGGACGATTAGTGTTCAGCGGGTGGGGG
CTTCCGACTGTATTGCTGAGTCCCAACCGAGAGCACTGTTGGCCGTTTGC
TGGGAATGCGCACCACAGCACAGTAGTGTCTCTGTTTTATGTGTCTCTTT
TTCTGTCTGACTGTCTGGTTGTCTCTATGCTTGATACGAAACGCTCAGAC
ACGAATGTTGCGTCCTGAGAACATATGTCTTTTGCTCTGTGTGTACCCGG
TCTGTGATAATCAAAACCATGAGCTCTACAGATTGTACATACAGCGCAGC
CAATTCCGCAGCACAGCCAGTTCGGCGGCAGGAGGCGAACCTCCTGTAGT
GATACCATCCCTGGCCCGGTGACCAAAAACGAGACTTGACGGGCAGCAGT
AGGAGCGATACATTTGATCTATTTGTCTGTCCGCCTGCCTGTGGGTGGTA
CTTGGCCAAACATGTGGTGAAAACATGATGTGCCAAATGTGTTGAACATA
CGATACAGTTCTTTTTACGTTGTCGTATTTGCCTCATCTCAGCCGTTTCC
TGGCGATGGACCGCGATCACTGTTGGCTCAAGGGGCGACCTTTATTGGCC
GTGTGACTGCGATATCCCACAATCGAAGCTCGCTTCCGACATCATCGTCG
TGTTTCTTTTTCACCGTGTTTGTCTTCCTGCACAAGTGAGCGCCAGCCCT
CATCTTCATAGTGGCAGGGAGAAAAGGATAAGTTATTTACTGCAAGTACC
TTAATCGAAGACGGGTCCCAATCTTAAATCCCAGTGTTGAGAAAAGAGGT
GTTACCAATTTTTTAGGTACCTCGCTCACTGTAATACCTTATATAGGAGT
ACCTTATACAGGGGTGTCTCGTGGAGGGCCCGCCACCTACGACATATATA
GTTATAGGTGTTAAGAACTTTTCATCACATATATCAACACTTTTTCGGGG
ACTATATAAGGTACTCTTCCATAGTGCAGTGATTGAGGTACCTCTAATGT
GTCCCCGCATAAATTTTGGTACACGCAAAAGCTCTCAACATCCATAACCA
TTTCTACAGTAGGAGGCCTCAACATTAGGTACTATTACAGTAAGCGAGGT
ACCTCTAAGGGGGGGGTATCTACTGTAGATGCTGTTACAGATGTTGAAAG
CTTTTAATCACGTGGTATCAATACTTTTTCGGGGACTCCTTAATTTGATT
GCACTTGTTTAAAGCAGTCGTCATCCAGCAGTATTAAATTGACTTTTTGG
GTATACCTCCAGTTACAAGGGTTGTTTATTAGTTGGATGTATATCCGATA
TGTTGTCGATATCGATTTATAGTATCTAGTGTTTTTTTCAGCCGATCTAT
CGACGTTTGCCGTTACTAGCTAAAAACGCGATTTATCGGTCATTTTCCAT
GGGCTGTCTGTTTCTATGGTACATATGTACTGACCGTAGGAGTTGTTCGC
TTATTTCTGCGGACAGGTGATTCACGTGGCATCCACTGCTTCTGTGTGTC
ATGCTCTCTTCGCTCGCCTGGTGCTGCATGTGACAGTCGATATTTTTCGC
CAGTATTTGGTCGATATTGATACATGGCGATATACGATGTGCCGACATAT
ATGTCATTATGTCGATTATTATTCACCAATAGACAAGCAACACTATCGGT
GGCCGATTCCCCAGGGGTATTGACATGCTTTTATAATTGTTCTTTTTAAC
ATATTGTATGCTTGAAATCGTGTCGTTCCCCCACGTCGTCGACATTGTTC
TGTTAAATGCTGATCTGGTCTGGTGTTCAAGTGTATTCTTGGGCACAAGA
GGCATACTTCTTGTAGGCATTTTTCTTTTATAGTGGTAGTAGCTGCTTGT
TGTGGCCTCCCCTGAGACCTCTCTGCCTGTCGCGCGCCTGGTGATGATGA
TGCAGGTCACCGGTGGAGATGCCATCAATATCCCTCCCAGGAACGATGGA
GGGAACGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5613:6088..11896-

>mRNA_H-paniculata_contig5613.13133.1 ID=mRNA_H-paniculata_contig5613.13133.1|Name=mRNA_H-paniculata_contig5613.13133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig5613:6088..11896- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGTCGTCGGTACTGTTGACGTGATGCCTGTCGTCGGTACTGTTGA
CGTGGCTGTCCATCTGCACCGTGTCCACAATATTGATCTATTTTGCCGTG
GAGTGTACTACCTTCGAACTTCGCTGGTTCTACCGGCTAAGGCTGTCCAT
CTGCACCGTGTCCACAATATTGATCTATTTTGCCGTGGAGTGTACTACCT
TCGAACTTCGCTGGTTCTACCGGCTAAGGTCACCGGTGGAGATGCCATCA
ATATCCCTCCCAGGAACGATGGAGGGAACGGCGTCACCGGTGGAGATGCC
ATCAATATCCCTCCCAGGAACGATGGAGGGAACGGC
back to top