mRNA_H-paniculata_contig5611.13131.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5611.13131.1
Unique NamemRNA_H-paniculata_contig5611.13131.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: D7G6B0_ECTSI (KH type-2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B0_ECTSI)

HSP 1 Score: 414 bits (1064), Expect = 1.780e-141
Identity = 214/221 (96.83%), Postives = 217/221 (98.19%), Query Frame = 1
Query:  259 SKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMVMEVTPNFG 921
            SKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRF+F DDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPK PLSDVITILPPKEE+ +E TPNFG
Sbjct:    2 SKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEEIALEATPNFG 222          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: A0A7S2UUD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUD3_9STRA)

HSP 1 Score: 378 bits (970), Expect = 3.890e-127
Identity = 194/225 (86.22%), Postives = 210/225 (93.33%), Query Frame = 1
Query:  244 MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMVMEVTPNF 918
            MA+N SKKRKFVADGVFYAELN+LLT ELAE+GYAGVEVRVTPLRTEIII ATR QNVLGEKGQRIRELTSVVQKRF+F DDAVELYAERVA RGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV+V+GKLRAQRAK+MKFRDGYMIKSG  + +YVD+AVRHV+MRQGVLGV VSIMLPHDPTGK GPKIPLSDV+TIL PKE+ V++ TP+ 
Sbjct:    1 MASNISKKRKFVADGVFYAELNQLLTSELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLGEKGQRIRELTSVVQKRFNFADDAVELYAERVANRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVVVSGKLRAQRAKSMKFRDGYMIKSGAAQREYVDYAVRHVLMRQGVLGVKVSIMLPHDPTGKTGPKIPLSDVVTILEPKEDAVLQPTPDI 225          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: A0A6V2VE19_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VE19_HETAK)

HSP 1 Score: 370 bits (950), Expect = 4.000e-124
Identity = 192/224 (85.71%), Postives = 208/224 (92.86%), Query Frame = 1
Query:  244 MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMVMEVTPN 915
            MA N SKKRKFVADGVFYAELNELLT+ELAE+GYAG+EVR TP+RTEIII ATR Q+VLGEKGQRIRELTSVVQKRF+FNDDAVELYAERVA RGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIV+GKLRAQRAKAMKFRDGYMIKSG+  +DYVD+AVRHV+MRQGVLGV VSIM+ HDP+GK GPK PLSDVITIL PKEE+ +  TP+
Sbjct:    1 MAPNISKKRKFVADGVFYAELNELLTRELAEDGYAGLEVRTTPIRTEIIIRATRTQSVLGEKGQRIRELTSVVQKRFNFNDDAVELYAERVANRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVSGKLRAQRAKAMKFRDGYMIKSGQASKDYVDYAVRHVLMRQGVLGVKVSIMMQHDPSGKTGPKKPLSDVITILEPKEEIELPPTPS 224          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: A0A836CGW2_9STRA (Prokaryotic type K homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW2_9STRA)

HSP 1 Score: 369 bits (948), Expect = 7.480e-124
Identity = 193/225 (85.78%), Postives = 204/225 (90.67%), Query Frame = 1
Query:  244 MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMVMEVTPNF 918
            M TN SKKRKFVADGVFYAELNEL+ +ELAE+GY+GVEVRVTPLRTEIII AT+PQNVLGEKGQRIRELTSVVQKRFSF D+AVELYAERVA RGLCAQTQAESLKYKL+GGLAVRRACYGVLRFIMESGAKGAEVIV+GKLRA RAKAMKF DGYMIKSGR   DYVD AVRHV MRQG+LGV V IMLPHDPTGKEGPK PLSDVITIL PKEE  +E TP +
Sbjct:    1 MTTNISKKRKFVADGVFYAELNELMRRELAEDGYSGVEVRVTPLRTEIIIRATQPQNVLGEKGQRIRELTSVVQKRFSFPDNAVELYAERVAVRGLCAQTQAESLKYKLVGGLAVRRACYGVLRFIMESGAKGAEVIVSGKLRAARAKAMKFADGYMIKSGRATVDYVDRAVRHVAMRQGMLGVIVRIMLPHDPTGKEGPKTPLSDVITILEPKEEAPLEATPVY 225          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: W7TS51_9STRA (40s ribosomal protein s3-3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS51_9STRA)

HSP 1 Score: 351 bits (900), Expect = 2.570e-116
Identity = 180/234 (76.92%), Postives = 202/234 (86.32%), Query Frame = 1
Query:  244 MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMVMEVTPNFG*SHSSTSG 945
            M TN SKKRKF+ADGVFYAELNELLT+ELAE+GYAGVEVRV PLRTEIIISATR QNVLGEKGQRIRELT+V+QKRF+F D  VEL+AE+VA RGLCAQ QAESLKYKLLGGLAVRRACYGVLRF+ME GAKGAEVIV+GKLRAQRAK+MKF+DGYMIKSG+ + +YVD+AVRHV+MRQGVLGV V IMLPHDP GK GPK  LSDV+ +L PKEE+ + V      S+    G
Sbjct:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIISATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVIVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPAGKIGPKAKLSDVVNVLEPKEEIELPVPEPVTMSYGGMGG 234          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: F0YDG3_AURAN (KH type-2 domain-containing protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDG3_AURAN)

HSP 1 Score: 347 bits (889), Expect = 7.770e-115
Identity = 182/220 (82.73%), Postives = 196/220 (89.09%), Query Frame = 1
Query:  259 SKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMVMEVTPNF 918
            SKKRKFVADG+FYAELNELLT+ELAE+GYAGVEVRVTPLRTEIII ATR QNVLGEKGQRIRELTSVVQKRF F D AVELYAERVA RGLCAQ QAESLKYKLLGGLAVRRACYGV+RF+MESGAKG EV+V+GKLRAQRAKAMKF DGYMIK+G  + +YVD AVRHV+MRQGVLGV VSIMLPHD +GK GPK  L+DV+TIL PKEE  M V  NF
Sbjct:    5 SKKRKFVADGLFYAELNELLTRELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLGEKGQRIRELTSVVQKRFHFQDGAVELYAERVANRGLCAQAQAESLKYKLLGGLAVRRACYGVVRFVMESGAKGVEVVVSGKLRAQRAKAMKFTDGYMIKTGHSKREYVDSAVRHVLMRQGVLGVKVSIMLPHDASGKTGPKNTLADVVTILEPKEEAPMPVA-NF 223          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: A0A7S2RY40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY40_9STRA)

HSP 1 Score: 339 bits (869), Expect = 1.480e-111
Identity = 176/231 (76.19%), Postives = 197/231 (85.28%), Query Frame = 1
Query:  205 LHLLNYVFP*AVAMATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEMV 897
            LH    + P  +A   N SKKRKFVADGVFYAELNE L +ELAEEGYAGVE+R TP+RTEIII ATR Q+VLGEKG+RIRELTSVVQKRF+F D AVELYAERVA +GLCAQ QAESLKYKL+GGLAVRRACYGVLRFIMESGA GAEV V+GK R QRAKAMKF+DGYMIK+G+V ++YVD AVRHV+MR GVLGV V IMLPHDP G +GPK PLSD ITI+ PKEE++
Sbjct:    6 LHRRRRLPPCTMANTQNISKKRKFVADGVFYAELNEFLIRELAEEGYAGVEIRATPIRTEIIIRATRTQSVLGEKGRRIRELTSVVQKRFNFADGAVELYAERVANKGLCAQAQAESLKYKLIGGLAVRRACYGVLRFIMESGANGAEVTVSGKARGQRAKAMKFQDGYMIKTGKVAQEYVDTAVRHVLMRLGVLGVRVEIMLPHDPKGIQGPKTPLSDKITIIEPKEEVI 236          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: M4B627_HYAAE (KH type-2 domain-containing protein n=26 Tax=Eukaryota TaxID=2759 RepID=M4B627_HYAAE)

HSP 1 Score: 335 bits (859), Expect = 4.790e-110
Identity = 172/217 (79.26%), Postives = 192/217 (88.48%), Query Frame = 1
Query:  244 MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEM 894
            MA N SKKRKFVADGVFYAELNELL +EL  +GY+GVEVRVTP+RTEIII ATR Q VLGEKGQRIR LTSVVQKRF+F D AVELYAERVA RGLC+Q QAESLKY+LLGGLAVRRACY V+RF+ME+GAKG +VIV+GKLRAQRAKAMKF +GYM+K+G   ++YVD AVRHVMMRQGVLGV VSIMLPHDPTGK+GPK  L DV+TIL PKEE+
Sbjct:    1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLGEKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACYSVVRFVMEAGAKGVQVIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAVRHVMMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEV 217          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: A0A7S2PJ71_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PJ71_9STRA)

HSP 1 Score: 334 bits (857), Expect = 6.550e-110
Identity = 171/212 (80.66%), Postives = 187/212 (88.21%), Query Frame = 1
Query:  259 SKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEM 894
            S KRKFVADGVFYAELNELLT ELAE+GYAGVEVR TP RTE+II ATR QNVLGEKGQRIRELTSVVQKRF F D AVELYAERVA RGLCAQ QAESLK+KLLGGLAVRRACYGV+RF+ME+ AKG EVIV+GKLR QRAKAMKF DGYMIK+G   + Y D AVRHVM+RQG++GV VSIMLPHDP+GK+GPKIPL D +TIL PKEE+
Sbjct:    5 STKRKFVADGVFYAELNELLTSELAEDGYAGVEVRTTPHRTEVIIRATRTQNVLGEKGQRIRELTSVVQKRFDFADGAVELYAERVANRGLCAQAQAESLKFKLLGGLAVRRACYGVVRFVMEANAKGVEVIVSGKLRGQRAKAMKFCDGYMIKTGHAGQVYTDTAVRHVMLRQGIIGVRVSIMLPHDPSGKDGPKIPLDDAVTILEPKEEV 216          
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Match: A0A024UIL6_9STRA (40S ribosomal protein S3 n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UIL6_9STRA)

HSP 1 Score: 334 bits (857), Expect = 7.030e-110
Identity = 173/217 (79.72%), Postives = 194/217 (89.40%), Query Frame = 1
Query:  244 MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGPKIPLSDVITILPPKEEM 894
            MA N SKKRKFVADGVF+AELNELL +ELAE+GYAGVEVRVTPLRTE+II AT+ Q VLGEKGQRIRELTSVVQKRF+F D AVELYAERVA RGLCAQ QAESLKYKLLGGLAVRRA  GVLRF++E+GAKG EVIV+GKLRAQRAKAMKF++G+M+K+G   ++YVD AVRHV+MRQGVLGV VSIMLPHDPTG+ GPK  L DV+TIL PKEE+
Sbjct:    1 MALNISKKRKFVADGVFFAELNELLQRELAEDGYAGVEVRVTPLRTEVIIRATKTQEVLGEKGQRIRELTSVVQKRFNFADGAVELYAERVANRGLCAQAQAESLKYKLLGGLAVRRAAMGVLRFVLEAGAKGCEVIVSGKLRAQRAKAMKFKEGFMVKTGDANKEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGRMGPKRNLDDVVTILEPKEEV 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5611.13131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6B0_ECTSI1.780e-14196.83KH type-2 domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2UUD3_9STRA3.890e-12786.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V2VE19_HETAK4.000e-12485.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CGW2_9STRA7.480e-12485.78Prokaryotic type K homology domain-containing prot... [more]
W7TS51_9STRA2.570e-11676.9240s ribosomal protein s3-3 n=3 Tax=Monodopsidaceae... [more]
F0YDG3_AURAN7.770e-11582.73KH type-2 domain-containing protein n=2 Tax=Pelago... [more]
A0A7S2RY40_9STRA1.480e-11176.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4B627_HYAAE4.790e-11079.26KH type-2 domain-containing protein n=26 Tax=Eukar... [more]
A0A7S2PJ71_9STRA6.550e-11080.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A024UIL6_9STRA7.030e-11079.7240S ribosomal protein S3 n=8 Tax=Saprolegniaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5611contigH-paniculata_contig5611:715..4215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.2
Seed ortholog evalue6e-115
Seed eggNOG ortholog2880.D7G6B0
Preferred nameRPS3
KEGG koko:K02985
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0000184,GO:0000226,GO:0000302,GO:0000702,GO:0000956,GO:0001726,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002181,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005783,GO:0005789,GO:0005791,GO:0005819,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0008017,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008534,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0016829,GO:0016835,GO:0017148,GO:0019104,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019866,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022407,GO:0022409,GO:0022607,GO:0022613,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030054,GO:0030155,GO:0030162,GO:0030425,GO:0030544,GO:0030684,GO:0030686,GO:0030688,GO:0030867,GO:0031072,GO:0031090,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031334,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031503,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032268,GO:0032269,GO:0032270,GO:0032271,GO:0032273,GO:0032356,GO:0032357,GO:0032358,GO:0032587,GO:0032663,GO:0032743,GO:0032872,GO:0032874,GO:0032886,GO:0032944,GO:0032946,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0033674,GO:0033750,GO:0034097,GO:0034248,GO:0034249,GO:0034399,GO:0034599,GO:0034612,GO:0034613,GO:0034614,GO:0034641,GO:0034645,GO:0034655,GO:0035690,GO:0036477,GO:0042102,GO:0042104,GO:0042127,GO:0042129,GO:0042175,GO:0042221,GO:0042254,GO:0042325,GO:0042327,GO:0042493,GO:0042542,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043506,GO:0043507,GO:0043523,GO:0043524,GO:0043549,GO:0043603,GO:0043604,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044390,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044430,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045738,GO:0045739,GO:0045785,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045935,GO:0045937,GO:0046006,GO:0046328,GO:0046330,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050657,GO:0050658,GO:0050670,GO:0050671,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051018,GO:0051029,GO:0051052,GO:0051053,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051251,GO:0051252,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051495,GO:0051536,GO:0051540,GO:0051606,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051879,GO:0052547,GO:0052548,GO:0055044,GO:0060255,GO:0060548,GO:0061481,GO:0065007,GO:0065009,GO:0070013,GO:0070181,GO:0070301,GO:0070302,GO:0070304,GO:0070507,GO:0070663,GO:0070665,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0070972,GO:0071159,GO:0071166,GO:0071236,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0090305,GO:0097064,GO:0097100,GO:0097159,GO:0097237,GO:0097447,GO:0097458,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098590,GO:0098827,GO:0120025,GO:0120038,GO:0140078,GO:0140097,GO:1900117,GO:1900119,GO:1901214,GO:1901215,GO:1901222,GO:1901224,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902544,GO:1902546,GO:1902903,GO:1902905,GO:1903037,GO:1903039,GO:1903320,GO:1903321,GO:1903506,GO:1905051,GO:1905053,GO:1990089,GO:1990090,GO:1990904,GO:2000112,GO:2000113,GO:2000116,GO:2001020,GO:2001021,GO:2001022,GO:2001056,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244,GO:2001270,GO:2001272
EggNOG free text desc.oxidized purine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0092@1,KOG3181@2759
Ec32 ortholog descriptionRibosomal protein S3, C-terminal
Ec32 orthologEc-10_001190.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons7
Model size1474
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.2661293-UTR-H-paniculata_contig5611:714..12641622930596.2661293-UTR-H-paniculata_contig5611:714..1264Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5611 715..1264 -
1691481364.7680533-UTR-H-paniculata_contig5611:714..12641691481364.7680533-UTR-H-paniculata_contig5611:714..1264Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5611 715..1264 -
1622930596.3967566-UTR-H-paniculata_contig5611:3972..42151622930596.3967566-UTR-H-paniculata_contig5611:3972..4215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5611 3973..4215 -
1691481364.8422954-UTR-H-paniculata_contig5611:3972..42151691481364.8422954-UTR-H-paniculata_contig5611:3972..4215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5611 3973..4215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.28391-CDS-H-paniculata_contig5611:1264..13601622930596.28391-CDS-H-paniculata_contig5611:1264..1360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 1265..1360 -
1691481364.7819057-CDS-H-paniculata_contig5611:1264..13601691481364.7819057-CDS-H-paniculata_contig5611:1264..1360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 1265..1360 -
1622930596.3022988-CDS-H-paniculata_contig5611:1633..17221622930596.3022988-CDS-H-paniculata_contig5611:1633..1722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 1634..1722 -
1691481364.7932367-CDS-H-paniculata_contig5611:1633..17221691481364.7932367-CDS-H-paniculata_contig5611:1633..1722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 1634..1722 -
1622930596.3177817-CDS-H-paniculata_contig5611:2054..21451622930596.3177817-CDS-H-paniculata_contig5611:2054..2145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 2055..2145 -
1691481364.80163-CDS-H-paniculata_contig5611:2054..21451691481364.80163-CDS-H-paniculata_contig5611:2054..2145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 2055..2145 -
1622930596.3320563-CDS-H-paniculata_contig5611:2373..24751622930596.3320563-CDS-H-paniculata_contig5611:2373..2475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 2374..2475 -
1691481364.810236-CDS-H-paniculata_contig5611:2373..24751691481364.810236-CDS-H-paniculata_contig5611:2373..2475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 2374..2475 -
1622930596.3495686-CDS-H-paniculata_contig5611:3195..32711622930596.3495686-CDS-H-paniculata_contig5611:3195..3271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 3196..3271 -
1691481364.8184302-CDS-H-paniculata_contig5611:3195..32711691481364.8184302-CDS-H-paniculata_contig5611:3195..3271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 3196..3271 -
1622930596.3646233-CDS-H-paniculata_contig5611:3454..36121622930596.3646233-CDS-H-paniculata_contig5611:3454..3612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 3455..3612 -
1691481364.8264396-CDS-H-paniculata_contig5611:3454..36121691481364.8264396-CDS-H-paniculata_contig5611:3454..3612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 3455..3612 -
1622930596.3806255-CDS-H-paniculata_contig5611:3903..39721622930596.3806255-CDS-H-paniculata_contig5611:3903..3972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 3904..3972 -
1691481364.8343456-CDS-H-paniculata_contig5611:3903..39721691481364.8343456-CDS-H-paniculata_contig5611:3903..3972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5611 3904..3972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5611.13131.1prot_H-paniculata_contig5611.13131.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5611 1265..3972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5611.13131.1

>prot_H-paniculata_contig5611.13131.1 ID=prot_H-paniculata_contig5611.13131.1|Name=mRNA_H-paniculata_contig5611.13131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MATNQSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIII
SATRPQNVLGEKGQRIRELTSVVQKRFSFNDDAVELYAERVAKRGLCAQT
QAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVIVAGKLRAQRAKAM
KFRDGYMIKSGRVREDYVDHAVRHVMMRQGVLGVTVSIMLPHDPTGKEGP
KIPLSDVITILPPKEEMVMEVTPNFG*
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mRNA from alignment at H-paniculata_contig5611:715..4215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5611.13131.1 ID=mRNA_H-paniculata_contig5611.13131.1|Name=mRNA_H-paniculata_contig5611.13131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3501bp|location=Sequence derived from alignment at H-paniculata_contig5611:715..4215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAGAAGTGTCTGCTTTGTCTAAGTTGCTCTGTTGAGGGCAACAAGGCG TTCTCTGCGCTGAATGATGCAGCAACGTAAAAGACAAGGTTATCGCAATG GCGTGTATCGCAGGTCAAGGTTGGAGAGCTTGAAGGAGGCTCTGTGTTTG GGATGCCTGTGTCTCTTGGTAGGGTCATGATGTATCAGTTTTCCACCAGA CGCCCTCCATTTGCTGAACTATGTCTTCCCTTGAGCAGTAGCCATGGCGA CCAACCAGTCCAAGAAGCGCAAGTTCGTGGCCGATGGTGTCTTCTACGCT GAGCTCAATGAGGTGTGATGTCTTGTGGATGTGGCTCGATGAGATCTGAT TTAATGGAATATAATGGAGGCCGACAGTTCAGTGCAGAAAAGACGACTTA GTGCAAAATGATTGTGTAGTACTTGATGGACAGTTATGGCCTCTACTTCT TTAGGGTCAGTCCTTTGTGTGCTACGTTGTATACTGTAAATCGGAGTACA GCGTCAAAAGGATAAATATTGAGCATGTAGGGCTTGGAGTATTTTTCGGG CACTGTCCACCCTGCTTTAACCTCTAGATTTTCCATGACGTGCCGTATCT CAGCTCCTCACCCAGGAGTTGGCGGAAGAGGGTTACGCTGGCGTCGAGGT TCGTGTCACCCCCCTCCGCACGGAGATCATCATCAGTGCCACCCGTCCCC AGAACGTGCTCGGTGAGAAGGGACAGCGCATCAGGGAGCTCACCTCGGTG GTGCAAAAGCGGTGAGTATGGACGGATATCTCAAGATCGATTGTGTTCTT CGTGACGTGAGCGGGGCCTTGTACCCGCCCCGAGAGATACCGTGAACTAC TTATTTGCACTTTTTCGGGTGTTTAAGTTTTTATGATGAGCCCGCCCTGC GACTCATCTTCGCCTGCACACGGAAAATCTATGCACAAAAATAGGTTCAG CTTCAACGATGATGCCGTCGAGCTCTACGCCGAGCGAGTTGCTAAGCGTG GACTGTGTGCACAAACTCAGGTAAGAGGGTGGTCTGAGACACGTGATTCT AGGATTTCGCAGGCTATTATACGCTTGATGTACCTGCAAAAGATAGATGC TAACGGCTGATGTCTCCCAAAGTCATAGGATGAATTTACAGTGGACGTCT CAAGAGACATGGGTACGTCTCTTGTTATGTAAGTAGTTGGGTGCTGTCTT GACCGTTTGAAACGTACTTCACCTTGGATCACTAAAACCGTTCGAATCGC TCTGGAGGATGTGTTGAAATGGAAAGCAATCTTGGCAACAACTGCCAGGG AATGCAGTTGCGGTCGGTGATAGTTTTCGGAAGACTTCGCGTACGTGATG GTGTCCATAAGAGTATTTCCAGGGTGGCGGTGATTTCTAGGATGGAGATA TTTCTTACGATCTGGTGTCTAGGAATCACAAGTGTTGAACCAAACCGGCA GCTGTATGCAAGCCGTTTAATCACAAAAAACAACAGTATCTCATTTTCAA CGTGTCTCCACGATTTGTATACACCATTACAGTCAAAACGGTCGTAAGTA CCATGATTATGTCCTTCAAGTGTTGAAATAATGAATAGCCTCAACGACAT ATCTTCACCTGCGCAGTTGGCGTGCTATATCACCAAACCGTAGGAACTAG AGCCCAATACTCGTCGTGTAAACAAAAGCATGTGTCAGTCCTAGGTGAAA TGTCAGTGTTTCAATTCGTGTTCACCTGTTCACCAAATAGGCCGAGTCGC TGAAGTACAAGCTATTGGGTGGACTCGCCGTTCGCCGTGCGTGCTACGGT GTCCTCCGATTTATCATGGAATCCGGAGCAAAGGGTGCTGAGGTGAGAAA TTTACGACCCATGAATCTCCCTTGTGGATACATTCTCATATACTGTACAA GGTCTATCCAACACGACATGATAGCAAGCATTCATCATGCATGGATGGAG ATGGTAGAGATGAATTGGGGCTTTGTTCGAGTTATTCTTGCGCCCCTCTA CACTGAGGGAAGACTTTCGAATTATCGAATGGAAGGATGTTGATTCTGAT GTTGTACTTGGGACACGAAGGTGATCGTTGCTGGTAAGCTGAGGGCGCAG CGTGCGAAGGCCATGAAGTTCCGTGATGGTTACATGATCAAGAGCGGTCG CGTCAGGGAAGGTGAGGATACACGCGAAGGGTAGCATGCCAAGTTGTGTG ATTCTAAGAGGACACACATCATATCATTACGCTGCACATCCAAAATATCA AGAGGAAGTGGGCGCCGCCGAGGACGATACGAGAGTAAGAAAATATATAT GTAGAGGGTAAGGTCTGGAAATACGGGGAGATATCGTGGCACTCGGCATT CTTCATGTTTGCCAACTGATGGTCTAATTCCCGAAAAGAATCGCCAGGTG AAAAAACTTTGACCTTTTGTGCAAGATTCTTCGCTTTATGTCAGTCCCTG AATATCTTATTTTGATTCCCCGTGTGTTATTTCGCTGTGGCAGACTACGT GGACCACGCCGTCCGCCATGTGATGATGCGCCAGGGTGTTCTTGGTGTCA CCGTGTCCATCATGCTTCCACACGATCCGACGGTGAGGCAACTAGAACTA TTTTTCCAGGGGTTTCAAGTCAAGTGTTGTGAGAGTTGTCGAATGAGGCC ATGTACACAAGTGATGAGAAGTGGCGCAGCGAAGCCCCAATGTAAGTATG ATGGGGAAAATTGCCTCATGGCGACGTTCTGTGGAAGGACCTTCAAGCGT GTTGAACTACAGTATCTTGAAACGTACCCTGCCAAAATTTACGAAGAAAA CTTATATAAATCAACATTATTACGATCGGCCTTTTCTGTACTTTTTGTTT TTCAGGGTAAGGAGGGTCCGAAGATACCTCTTTCGGACGTCATCACTATC CTTCCGCCAAAGGAGGAGATGGTGATGGAGGTTACCCCTAACTTCGGCTA ATCGCACTCTTCCACGAGTGGAGAGGGGGTGAACATGGCTTGCGGGTCGA TTTGAGGAGAGGCGGTGGAGCATCGACGTTTCTGCGTTGAATAATGCAGT TTAATGAAGATACTCACGAGACATGGTGTTTAATTTGGTCCCGGTTTTGG TTTTGCGAGTGATTCTGCATGAAATTTGAATCGTGCGGAAGATGTGACCT CCATATGGAGTTTAGTTGATCACGTACCGGTCTGTGGACTGTTGCGAGGG AACTCAGCTTTTTGCTGTTTCATACTAGGACCGATTTGATGTCCGCCAAC AAGCATTTTCGTATTGGTGGAGTGTCGAGCTGGAAATCGCCGACGAGTAC TTGTCCATCTTTGTATCACCGGGTACTTGCAGCGTAAATAACAAACTACA CTACCTGCTCCCGGCGATTTTCTCGATGCATGAATGAACTGGTGGCCGAA TGTATAGCACGACCCAATATATGCTCTGTTCAGATGCAATCATAGGATAT TGGAAGTCTTAAAATTCGTCCAAAACTAATATTTCATCTTACTACTTTTT C
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Coding sequence (CDS) from alignment at H-paniculata_contig5611:715..4215-

>mRNA_H-paniculata_contig5611.13131.1 ID=mRNA_H-paniculata_contig5611.13131.1|Name=mRNA_H-paniculata_contig5611.13131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig5611:715..4215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACCAACCAGTCCAAGAAGCGCAAGTTCGTGGCCGATGGTGTCTT
CTACGCTGAGCTCAATGAGATGGCGACCAACCAGTCCAAGAAGCGCAAGT
TCGTGGCCGATGGTGTCTTCTACGCTGAGCTCAATGAGCTCCTCACCCAG
GAGTTGGCGGAAGAGGGTTACGCTGGCGTCGAGGTTCGTGTCACCCCCCT
CCGCACGGAGATCATCATCAGTGCCACCCGTCCCCAGAACGTGCTCGGTG
AGAAGGGACAGCGCATCAGGGAGCTCACCTCGGTGGTGCAAAAGCGCTCC
TCACCCAGGAGTTGGCGGAAGAGGGTTACGCTGGCGTCGAGGTTCGTGTC
ACCCCCCTCCGCACGGAGATCATCATCAGTGCCACCCGTCCCCAGAACGT
GCTCGGTGAGAAGGGACAGCGCATCAGGGAGCTCACCTCGGTGGTGCAAA
AGCGGTTCAGCTTCAACGATGATGCCGTCGAGCTCTACGCCGAGCGAGTT
GCTAAGCGTGGACTGTGTGCACAAACTCAGGTTCAGCTTCAACGATGATG
CCGTCGAGCTCTACGCCGAGCGAGTTGCTAAGCGTGGACTGTGTGCACAA
ACTCAGGCCGAGTCGCTGAAGTACAAGCTATTGGGTGGACTCGCCGTTCG
CCGTGCGTGCTACGGTGTCCTCCGATTTATCATGGAATCCGGAGCAAAGG
GTGCTGAGGCCGAGTCGCTGAAGTACAAGCTATTGGGTGGACTCGCCGTT
CGCCGTGCGTGCTACGGTGTCCTCCGATTTATCATGGAATCCGGAGCAAA
GGGTGCTGAGGTGATCGTTGCTGGTAAGCTGAGGGCGCAGCGTGCGAAGG
CCATGAAGTTCCGTGATGGTTACATGATCAAGAGCGGTCGCGTCAGGGAA
GGTGATCGTTGCTGGTAAGCTGAGGGCGCAGCGTGCGAAGGCCATGAAGT
TCCGTGATGGTTACATGATCAAGAGCGGTCGCGTCAGGGAAGACTACGTG
GACCACGCCGTCCGCCATGTGATGATGCGCCAGGGTGTTCTTGGTGTCAC
CGTGTCCATCATGCTTCCACACGATCCGACGACTACGTGGACCACGCCGT
CCGCCATGTGATGATGCGCCAGGGTGTTCTTGGTGTCACCGTGTCCATCA
TGCTTCCACACGATCCGACGGGTAAGGAGGGTCCGAAGATACCTCTTTCG
GACGTCATCACTATCCTTCCGCCAAAGGAGGAGATGGTGATGGAGGTTAC
CCCTAACTTCGGCTAAGGTAAGGAGGGTCCGAAGATACCTCTTTCGGACG
TCATCACTATCCTTCCGCCAAAGGAGGAGATGGTGATGGAGGTTACCCCT
AACTTCGGCTAA
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