mRNA_H-paniculata_contig5607.13127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5607.13127.1
Unique NamemRNA_H-paniculata_contig5607.13127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: D7G183_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G183_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.310e-32
Identity = 55/75 (73.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            +HLEV+RASA AIE +E+ GGTVTC HFNRLALRALLKP+KFE+LP RARPPP+LMP++LD+GRRGYL+P+V ++
Sbjct:  215 VHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPDVQMR 289
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BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A8J2SDD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDD0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.200e-25
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            +H+EV+RASA+AI+ +E +GGTVTC H+NRLALRALLKP KFEQ+P RARPPP+LM YY+   +RG  SP V ++
Sbjct:  158 VHIEVSRASASAIKAVEDAGGTVTCAHYNRLALRALLKPHKFEQMPRRARPPPRLMRYYVSDEKRGEYSPLVQLR 232
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BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A1Z5JC23_FISSO (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JC23_FISSO)

HSP 1 Score: 102 bits (255), Expect = 4.100e-25
Identity = 44/75 (58.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            +HL+V+RAS +AI+ +E +GGTVT  H+NRLALRAL++P+KF+Q+P  ARPPPK  PYY  +G RGYL+P+V ++
Sbjct:  166 VHLKVSRASKSAIDAVEKAGGTVTTVHYNRLALRALMRPEKFDQVPRFARPPPKYQPYYTSWGNRGYLNPQVQIR 240
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BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A4D9D510_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D510_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.930e-25
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    4 HLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFE--------------QLPMRARPPPKLMPYYLDYGRRGYLSPEV 216
            H+EV+RAS  AI+ +E +GGTVTC HFNRLALRALLKP+ F               QLP RARPPP+LMP YLD  RRGYLSPEV
Sbjct:  152 HIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPVLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEV 236
[Close]
BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A7S1BS99_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BS99_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.580e-25
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            I++E++RASA+AI  IE +GGTVT  H+NRLAL+ALLKP +F+ +P RA PPPKL+PYY  Y +RGYLSPEV ++
Sbjct:  248 INIEISRASASAIRAIEEAGGTVTTVHYNRLALKALLKPHRFDVIPRRAAPPPKLLPYYTSYEKRGYLSPEVQIR 322
[Close]
BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: W7U3I7_9STRA (Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3I7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.220e-24
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    4 HLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFE--------------QLPMRARPPPKLMPYYLDYGRRGYLSPEV 216
            H+EV+RAS  AI+ +E +GGTVTC HFNRLALRALLKP+ F               QLP RARPPP+LMP YLD  RRGYLSPEV
Sbjct:  242 HIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEV 326
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BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A836CA06_9STRA (Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA06_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.260e-23
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQ--LPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            +HLEV+ ASA AI  +E+ GGTVTC HFNRLALRALLKP KF    LP RARPPP+LM  +L   +RGYLSPEV ++
Sbjct:  155 LHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLR 231
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BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: M4C002_HYAAE (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C002_HYAAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.940e-23
Identity = 43/75 (57.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            + +EV++ASA+AI+ +E++GG++T  + NRLALRALLKP KFE +P+ ARP PK + YY +Y +RGYLSPE+ VK
Sbjct:   58 LDIEVSQASASAIKAVEAAGGSITSVYHNRLALRALLKPHKFETIPLSARPTPKKLTYYTNYEKRGYLSPEIQVK 132
[Close]
BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A6U0WPW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0WPW9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.120e-23
Identity = 42/75 (56.00%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            +H+EV+RAS +AI  IE +GG++TC ++N +ALR+L+ P+KF+  P  ARPPPKLMP+YLDY  RG+LSPE+ ++
Sbjct:  168 LHVEVSRASQSAITAIEGAGGSITCVYYNPIALRSLMFPEKFQLAPRIARPPPKLMPFYLDYQNRGFLSPEIQLR 242
[Close]
BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Match: A0A7S1Z8D1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8D1_TRICV)

HSP 1 Score: 97.1 bits (240), Expect = 7.490e-23
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRARPPPKLMPYYLDYGRRGYLSPEVSVK 225
            + LEV+RAS +AI+ +E +GG +   H NRLAL+ALLKP KF+ +P RA PPPKLMPYY  Y  RGYLSPEV ++
Sbjct:  181 LRLEVSRASRSAIDAVEEAGGEIATVHLNRLALKALLKPHKFDVIPRRALPPPKLMPYYTSYENRGYLSPEVQMR 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5607.13127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G183_ECTSI1.310e-3273.33Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A8J2SDD0_9STRA2.200e-2564.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5JC23_FISSO4.100e-2558.67Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
A0A4D9D510_9STRA4.930e-2562.35Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7S1BS99_9STRA5.580e-2562.67Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7U3I7_9STRA2.220e-2462.35Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsi... [more]
A0A836CA06_9STRA5.260e-2364.94Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tri... [more]
M4C002_HYAAE6.940e-2357.33Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A6U0WPW9_9STRA7.120e-2356.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1Z8D1_TRICV7.490e-2360.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5607contigH-paniculata_contig5607:1735..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.3e-26
Seed eggNOG ortholog2880.D7G183
Preferred nameMRPL15
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034097,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070125,GO:0070126,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0200@1,KOG0846@2759
Ec32 ortholog descriptionRibosomal protein L18e/L15P
Ec32 orthologEc-23_002750.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930595.9072325-CDS-H-paniculata_contig5607:1734..18421622930595.9072325-CDS-H-paniculata_contig5607:1734..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5607 1735..1842 +
1691481364.612796-CDS-H-paniculata_contig5607:1734..18421691481364.612796-CDS-H-paniculata_contig5607:1734..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5607 1735..1842 +
1622930595.9204602-CDS-H-paniculata_contig5607:2746..28631622930595.9204602-CDS-H-paniculata_contig5607:2746..2863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5607 2747..2863 +
1691481364.6255555-CDS-H-paniculata_contig5607:2746..28631691481364.6255555-CDS-H-paniculata_contig5607:2746..2863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5607 2747..2863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5607.13127.1prot_H-paniculata_contig5607.13127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5607 1735..2863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5607.13127.1

>prot_H-paniculata_contig5607.13127.1 ID=prot_H-paniculata_contig5607.13127.1|Name=mRNA_H-paniculata_contig5607.13127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
IHLEVTRASAAAIEYIESSGGTVTCTHFNRLALRALLKPDKFEQLPMRAR
PPPKLMPYYLDYGRRGYLSPEVSVK
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mRNA from alignment at H-paniculata_contig5607:1735..2863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5607.13127.1 ID=mRNA_H-paniculata_contig5607.13127.1|Name=mRNA_H-paniculata_contig5607.13127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig5607:1735..2863+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCACCTAGAGGTTACTCGTGCCTCAGCCGCCGCGATTGAGTACATCGA
GTCTAGCGGAGGTACCGTGACCTGCACTCACTTCAACCGCTTGGCTCTTC
GGGCGCTGGTGAGTAGCGATATGAGAGAATAAAGGAAGAGATCAAAGTAA
CTACAGGAATGAAAATGCCCCATGGTCGGTGGTAGTGAGAGTTTATTTTC
TCCTCTCTATCTCCCCCCCCCGTTTTTATTCTCTTGTCTTGTAACTTTTC
AACTTTCAGAAATGAGCAAATGTTTTTTCTGCCCACGATGTTCTCCTACT
ATTTCGACTCTTCCGACCCCTTCAAAATAATTGCAGCGTGTTACAGGGGG
AACATATTCTTGAAGGAAAATAAAAATAAAAAGTGGGGGGGAAACATGCC
CTTGATGGCAATGGCCCTAGCAGCTCGTGTCGGGTCTTGGCGTACATTGT
CACGTACTGTTGTATTGGATATTGTACGTGCGCATGGGCGAGGGAGAATT
TTCGTGTTTTCTGTTCGTGAGCTTTTTCCGTACCGTGTTTGGGGGACGCA
GGACCGCCTTGGCTGGCGTCGTGATCCCGACAATATCTTGCCACAGCCAC
TGTGAAGAGACTCGTTGGATTGTTCTTGGAGTCAATCGTCGACTGGATCG
TAGGTTGCATGTTTTCGTGGCGACTAGTATAGCAACTAATTAGTTCGAAC
GAATATCATGTTGCCACTCTAATTGACAAGCTCTCGTTTGTACATATTGT
CCGCCTCAGTAGGTCTGGGATGGAAATCACGTTGATGGTCCAGCGGCATC
ATTCGTTTTTTGTCGAATTGGCCAATGTCCACGGTGCTACCCACGTGCAT
CGTTCGGGTTAAATCAACATTCATATGAGTGTAGGCTCTATCCGCCGCCG
ACATTATCACGAATTTAGAGCAATGTTGCGGTACCTCGAACAGTGTACGC
TCATTCCTGAATATCGGACGTTTGATTGCTTCACATGGTTGTTATATTTT
TTGCCTGCTTAGCTCAAGCCGGACAAATTCGAGCAGCTGCCAATGAGGGC
TCGCCCGCCGCCGAAACTCATGCCCTACTATCTGGACTATGGACGAAGGG
GGTACCTTTCACCTGAGGTGAGCGTTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5607:1735..2863+

>mRNA_H-paniculata_contig5607.13127.1 ID=mRNA_H-paniculata_contig5607.13127.1|Name=mRNA_H-paniculata_contig5607.13127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig5607:1735..2863+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCACCTAGAGGTTACTCGTGCCTCAGCCGCCGCGATTGAGTACATCGA
GTCTAGCGGAGGTACCGTGACCTGCACTCACTTCAACCGCTTGGCTCTTC
GGGCGCTGATCCACCTAGAGGTTACTCGTGCCTCAGCCGCCGCGATTGAG
TACATCGAGTCTAGCGGAGGTACCGTGACCTGCACTCACTTCAACCGCTT
GGCTCTTCGGGCGCTGCTCAAGCCGGACAAATTCGAGCAGCTGCCAATGA
GGGCTCGCCCGCCGCCGAAACTCATGCCCTACTATCTGGACTATGGACGA
AGGGGGTACCTTTCACCTGAGGTGAGCGTTAAGCTCAAGCCGGACAAATT
CGAGCAGCTGCCAATGAGGGCTCGCCCGCCGCCGAAACTCATGCCCTACT
ATCTGGACTATGGACGAAGGGGGTACCTTTCACCTGAGGTGAGCGTTAAG
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