mRNA_H-paniculata_contig5606.13126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5606.13126.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 263 bits (672), Expect = 9.130e-72 Identity = 212/646 (32.82%), Postives = 312/646 (48.30%), Query Frame = 3
Query: 138 SPHVYRQTSAQKAVVSDKLLREIESGDVVSVRALLFDYHKGLKDPLVDPSEMLEHRFRTPFMAAAAIGKIAMFTAVVHAFDRYFATLQDENRKVELRK-QLSIKDVDGMTLLAIAVRSGSMPVVRAVLSGMRVLDDKEFVAGVVTAMDHNRKTVLMHAASAGNSAVFAKIFRAMEYAFSAQEDEIEEHLTXXXXXXXXXXXXXXXXXDHMTLIEVTSMIKKVLPPEKAQALLKEVDGDRMXXXXXXATAGKEAIRPPETIQHKKQHYAASQHSRMSWNASQGAGGYASRGNAAVSKTSIAEDGGFWGGTNSTLPTASLPTPGSNAAESVLSDGGDSKEDGHDGGGQGREDPENKPGEEAATNTSVIVDQMLMGK--------IDSSVVIFKCAYDFVREMLWKEEVRDQLKAKDSLGSNIMTYAIMSKHLDLFDTVFYSMRDILLDYEVDQLLGINKDDGNVTPVEAALSITTQDMKVLVMRRLDQLQKSIQVREKASTIEAKIQTFIPGKLIVIFQLLLPEVTGSSGFDASLVLLVVMCALAPVLAWGSNLLMLEASSAISGKRQSKITLLLSAPAMFFWGIGTSSV-VSDSLGWKASQSAAALAVATIILPALDAFFASNAVEHWLDKTSCQQRWFSRKADRIW 2045
SP RQTSA+++ S+++L +ES D +R L K + ++ PS EHR RTP MAAAA G +A+F V+HA +R + E ++ LRK QL D GMTLL +A RSG++ ++ AV+ +R+ + SAVF I ++ + +D +EE L D M ++ V+ ++ + P + + L+K+VD + + + H A+S TS ++ PTA+ G+ G+ +D + + K A V EEVR+QLKA DS G I +A++++ +FD VF++ R+ +LD E+ L+GINK+D + T +E AL + M V RR +L+++I + E+ASTIE+KIQ+FIPGKLIVIFQLLLPEV GSS L LL++M A+AP L+W + L+ E + KR+S ++L LSAPAMFFWG+GTS+V ++ +GW S +AAALAVATII+PA+DAFF S VE W DK SCQ+ FS++A W
Sbjct: 54 SPTFGRQTSARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERVRIAPEXXXXXXXXXXXXXXXXXXXXX------SAVFTVILNELQRCY---KDNVEEQLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTF-----------------LMH------------------------------AISATSF----------HTGAPTATXXXXXXXXXXXXXXXXXXXXX-----AGEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVLDPGMAVLKSALALV------EEVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEV-GSSD---KLTLLIIMSAIAPGLSWAAGLVAREKPGSTE-KRRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRAHAKW 617
BLAST of mRNA_H-paniculata_contig5606.13126.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 186 bits (472), Expect = 2.640e-47 Identity = 153/506 (30.24%), Postives = 229/506 (45.26%), Query Frame = 3
Query: 138 SPHVYRQTSAQKAVVSDKLLREIESGDVVSVRALLFDYHKGLKDPLVDPSEMLEHRFRTPFMAAAAIGKIAMFTAVVHAFDRYFATLQDENRKVELR-KQLSIKDVDGMTLLAIAVRSGSMPVVRAVLSGMRVLDDKEFVAGVVTAMDHNRKTVLMHAASAGNSAVFAKIFRAMEYAFSAQEDEIEEHLTXXXXXXXXXXXXXXXXXDHMTLIEVTSMIKKVLPPEKAQALLKEVDGDRMXXXXXXATAGKEAIRPPETIQHKKQHYAASQHSRMSWNASQGAGGYASRGNAAVSKTSIAEDGGFWGGTNSTLPTASLPTPGSNAAESVLSDGGDSKEDGHDGGGQGREDPENKPGEEAATNTSVIVDQMLMGKIDSSVVIFKCAYDFVREMLWKEEVRDQLKAKDSLGSNIMTYAIMSKHLDLFDTVFYSMRDILLDYEVDQLLGINKDDGNVTPVEAALSITTQDMKVLVMRRLDQLQKSIQVREKASTIEAKIQTFIPGKLIV 1652
SP RQTSA++A S+ +L +ESGD +R L K + ++ PS EHR RTP MAAAA G +A+FT V+HA +R + E ++ LR KQL D GMTLL +A RSGS+ ++ AV+ +R+++ E + DH+ TVLMHAA A SAVF I ++ + +D +EE L D M + V+ ++ + P + + L+K+VDG+ + +A + P T G + GE A N V+ D + + K A+ V+E VR+QLKA DS G I +A++++ +FD VF++ R+ +LD E+ L+GINK+D + T +E AL + M V RR +L+++I + E+ASTIE+KIQ+FIPGKLIV
Sbjct: 11 SPTFGRQTSAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLD----RDHSATTVLMHAAGARRSAVFTVILDELQRCY---KDNVEEQLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAISATADHTGAPTTXXXXXXXXXX------------------------XXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXA------------------------GEGAPRNEWVL---------DPGMAVLKSAWALVKE------VREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446
BLAST of mRNA_H-paniculata_contig5606.13126.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 176 bits (446), Expect = 8.610e-43 Identity = 114/300 (38.00%), Postives = 177/300 (59.00%), Query Frame = 3
Query: 1107 AAESVLSDGGDSKEDGHDGGGQGREDPENKPGEEAATNTSVIVDQMLMGKIDSSVV-IFKCAYDFVREMLWKEEVRDQLKAKDSLGSNIMTYAIMSKHLDLFDTVFYSMRDILLDYEVDQLLGINKDDGNVTPVEAALSITTQDMKVLVMRRLDQLQKSIQVREKASTIEAKIQTFIPGKLIVIFQLLLPEVTGSSGFDASLVLLVVMCALAPVLAWGSNLLMLEASSAISG--KRQSKITLLLSAPAMFFWGIGTSSVVSDSLGWKASQSAAALAVATIILPALDAFFASNAVEHWLDK 1997
A+++ L+ GG S D G G + K E ++ + K D+ VV +FK A V LW +EV QLKA D G +++T+A++S H +F+ + ++RD+L D V +++ N+ + TP+ AL+ DM+ L R QL+K + R K ST++AKI+ FIPGKL+V+FQLLLP++ L+LL +MCALAP++ + + ++ S +G R +K+++LL APAMFFWG+GTS+V +LGW +S SA ++A AT+ +PA+D+FF S DK
Sbjct: 281 ASKTALTGGGTSPADASSGAVAGDAAKDKKTAVEKTVEADT-KEEKGVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGR----QLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDK 575
BLAST of mRNA_H-paniculata_contig5606.13126.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 154 bits (388), Expect = 4.720e-36 Identity = 97/241 (40.25%), Postives = 136/241 (56.43%), Query Frame = 3
Query: 1257 IDSSVVIFKCAYDFVREMLWKEEVRDQLKAKDSLGSNIMTYAIMSKHLDLFDTVFYSMRDILLDYEVDQLL--GINKDDGNVTPVEAALSITTQDMKVLVMRRLDQLQKSIQVREKASTIEAKIQTFIPGKLIVIFQLLLPEVTGSSGFDASLVLLVVMCALAPVLAWGSNLLMLEASSAISGKRQSKITLLLSAPAMFFWGIGTSSVVSDSLGWKASQSAAALAVATIILPALDAFFASN 1973
+D + + + A +F R LW E R L+A+D +I+ +AIMS +F+ VF + R + D ++D LL G+ + A S M LV + L+ + R+ ST+ AKIQ FIPG LIVIFQLLLPE S D L LL+V+C +AP +WG+ A+S KR + T ++PAMFFWG+GTS + +S W S SAAALAVATI++PALD +F+
Sbjct: 131 LDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESG--DGPLYLLLVLCFIAPFWSWGA---------AMSVKRDPETTNTRASPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGR 360
BLAST of mRNA_H-paniculata_contig5606.13126.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.700e-34 Identity = 94/242 (38.84%), Postives = 135/242 (55.79%), Query Frame = 3
Query: 1257 IDSSVVIFKCAYDFVREMLWKEEVRDQLKAKDSLGSNIMTYAIMSKHLDLFDTVFYSMRDILLDYEVDQLL--GINKDDGNVTPVEAALSITTQDMKVLVMRRLDQLQKSIQVREKASTIEAKIQTFIPGKLIVIFQLLLPEVTGSSGFDASLVLLVVMCALAPVLAWGSNLLMLEASSAISGK-RQSKITLLLSAPAMFFWGIGTSSVVSDSLGWKASQSAAALAVATIILPALDAFFASN 1973
+D + + + +F R LW E R L+A+D +I+ +AIMS +F+T+F + R + D ++D LL G+ + A S M LV + L+ + R+ ST+ AKIQ FIPG LIVIFQLLLPE S D L LL+V+C +AP +WG + + + + RQ+ L+ PAMFFWG+GTS + +S W S SAAALAVATI++PALD +F+
Sbjct: 249 LDPRLPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESG--DGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGR 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5606.13126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5606.13126.1 >prot_H-paniculata_contig5606.13126.1 ID=prot_H-paniculata_contig5606.13126.1|Name=mRNA_H-paniculata_contig5606.13126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=736bp MSGGKSSCVPSSMASAKSPVRKTRSDFCPRKAFDESTQNSPHVYRQTSAQback to top mRNA from alignment at H-paniculata_contig5606:7..11595- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5606.13126.1 ID=mRNA_H-paniculata_contig5606.13126.1|Name=mRNA_H-paniculata_contig5606.13126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11589bp|location=Sequence derived from alignment at H-paniculata_contig5606:7..11595- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5606:7..11595- >mRNA_H-paniculata_contig5606.13126.1 ID=mRNA_H-paniculata_contig5606.13126.1|Name=mRNA_H-paniculata_contig5606.13126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4416bp|location=Sequence derived from alignment at H-paniculata_contig5606:7..11595- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |