mRNA_H-paniculata_contig56043.13125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 161 bits (408), Expect = 3.660e-42 Identity = 90/217 (41.47%), Postives = 121/217 (55.76%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGRREKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAA---------------GNSSEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RL++SLYGLKQ+ R WNK+LD L G+G +R +++CLY RD+ G+ LVV D L+ A R +DE K ++ +F+M DLG S +LGI +RRDRP I +SQ YI VL RYG +C+ TP A K +A G S Y ++GS+MY GTRPD AY+V R +P R + KR RYL D+ + F
Sbjct: 1125 RLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLVVYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRF 1341
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.800e-41 Identity = 84/207 (40.58%), Postives = 123/207 (59.42%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNS----SEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RLRKSLYGLKQS RNW+K +D + G GL S D CLY + GE L++V+Y D+L+I R D+FK +IS+ F M+DL L +LG+ ++R+R N T+ ISQ YI +L ++G +C+ V TP + K G +EY +VGSL+Y + TRPD A+ V + ++ +E + KR+ RYL D+G+ +
Sbjct: 340 RLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKY 545
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 158 bits (400), Expect = 4.030e-41 Identity = 86/207 (41.55%), Postives = 122/207 (58.94%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSS----EYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RLRKSLYGLKQS RNW+K +D + G G S+ D CLY + GE L++V+Y D+L+I RE VD+FK IS+ F M+DL L +LG+ ++R+R + ISQ +YI VL ++G +CR V TP + K G + EY +VGSL+Y + TRPD A+ V + ++ E + KR+ RYL D+GI +
Sbjct: 349 RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRY 554
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A2G2W4T7_CAPBA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W4T7_CAPBA) HSP 1 Score: 158 bits (400), Expect = 4.330e-41 Identity = 83/215 (38.60%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSE------------YRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RL+KSLYGLKQS R W K D F+ G G RS+ D+C+YF + + G + +++Y D+++IA R + VD+ K ++ F M+DLG ++LG+E+ RDR G + +SQ Y+ ++L R+G +C+ V TP A +K ++ + Y VGSLMY TRPD AY V +R M +P ++ + + K I RYL PD+G+ F
Sbjct: 616 RLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSL-VYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNTPLAAHFKLSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLVF 829
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL) HSP 1 Score: 154 bits (388), Expect = 1.060e-40 Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVI-AGRREKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP----AKAKYKK--------AAGNSSEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RL+KSLYGL QS R WN+ D + IGL ++ D+C+Y+ R+ GE + V V+ D+L+I A +++ + K + F M+DLG +++GIEV RDR GT+T+SQ YI +L RYGF + GV TP A K ++ A +EY+ M+G LMY + TRPD AY V + ++ +P E + CKR+F YLS D G+ +
Sbjct: 118 RLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYY-RERDGE-RVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFHYLSGTRDYGLVY 330
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM) HSP 1 Score: 148 bits (373), Expect = 2.030e-40 Identity = 75/215 (34.88%), Postives = 118/215 (54.88%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGRREKV-DEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSE------------YRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
+L++SLYGLKQS R WN+++DDF++ +G + +D C+Y RD G+ + V +Y D+LV+A +++ + KH + KRF M DLG L LG+E++ D +G +T+ Q +++ +L ++G + + V TP K + YR VG+LMY TRPD A V ++ DPC + KR+ RYL P G+ F
Sbjct: 18 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALCKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEDGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF 230
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.160e-40 Identity = 82/207 (39.61%), Postives = 121/207 (58.45%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNS----SEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RLRKSLYGLKQS RNW+K +D + G G S+ D CLY + GE L++V+Y D+L+I RE V +FKH IS+ F M+DL L +LG+ ++RDR + ISQ +YI +L ++ +C+ V TP + K G +EY +VGSL+Y + TRPD A+ V + ++ E + KR+ RYL ++G+ +
Sbjct: 120 RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKY 325
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A178VBX6_ARATH (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178VBX6_ARATH) HSP 1 Score: 150 bits (380), Expect = 2.610e-40 Identity = 77/204 (37.75%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 31 LRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAG-RREKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSEYR------------GMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYL 603
L++SLYGLKQS R WN D+F+ GI RS DSC+YF + NG +T + +++Y D+++IA + +V+E K +S+ F M+DLG ++LG+E+ RDR G +T+SQ Y+++VL+ + D + V TP +K A EY +GS+MY+ GTRPD AY + +R M P ++ + K + RY+
Sbjct: 47 LKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNG-DTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRGAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYM 249
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 154 bits (389), Expect = 3.310e-40 Identity = 79/197 (40.10%), Postives = 126/197 (63.96%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGRR-EKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSS----EYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYL 603
RL+KSLYGLKQS RNWN+ LD++L+ G R+ D C+Y + GE ++VV++ D+L+IA +K+ +FK N+ +FRM+DLG +S LGI ++ NG I ++Q YI+++L R+G +C+ TP + +++ + + YR +VGSL+Y T TRPD ++VV + ++++ P ED T K + RYL
Sbjct: 315 RLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLEDLVTAKHVLRYL 507
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 155 bits (391), Expect = 6.580e-40 Identity = 85/207 (41.06%), Postives = 120/207 (57.97%), Query Frame = 1
Query: 28 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNS----SEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 633
RLRKSLYGLKQS RNW+K +D + G G S+ D CLY + GE L+VV+Y D+L+IA R D+FK IS+ F M+DL L +LG+ ++R+R + ISQ YI +L ++G +C+ V TP + K G SEY +VGSL+Y + TRPD A+ V + ++ E + KR+ RYL D+GI +
Sbjct: 638 RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRY 843 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig56043.13125.1 >prot_H-paniculata_contig56043.13125.1 ID=prot_H-paniculata_contig56043.13125.1|Name=mRNA_H-paniculata_contig56043.13125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp MPFLRRLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGback to top mRNA from alignment at H-paniculata_contig56043:91..808- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig56043.13125.1 ID=mRNA_H-paniculata_contig56043.13125.1|Name=mRNA_H-paniculata_contig56043.13125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig56043:91..808- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig56043:91..808- >mRNA_H-paniculata_contig56043.13125.1 ID=mRNA_H-paniculata_contig56043.13125.1|Name=mRNA_H-paniculata_contig56043.13125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig56043:91..808- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |