mRNA_H-paniculata_contig560.13122.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig560.13122.1
Unique NamemRNA_H-paniculata_contig560.13122.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig560.13122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig560contigH-paniculata_contig560:22807..23337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930594.7734442-CDS-H-paniculata_contig560:22808..229531622930594.7734442-CDS-H-paniculata_contig560:22808..22953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 22809..22953 -
1691481364.0422592-CDS-H-paniculata_contig560:22808..229531691481364.0422592-CDS-H-paniculata_contig560:22808..22953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 22809..22953 -
1622930594.7852054-CDS-H-paniculata_contig560:23284..233371622930594.7852054-CDS-H-paniculata_contig560:23284..23337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 23285..23337 -
1691481364.0546188-CDS-H-paniculata_contig560:23284..233371691481364.0546188-CDS-H-paniculata_contig560:23284..23337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 23285..23337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig560.13122.1prot_H-paniculata_contig560.13122.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig560 22809..23337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig560.13122.1

>prot_H-paniculata_contig560.13122.1 ID=prot_H-paniculata_contig560.13122.1|Name=mRNA_H-paniculata_contig560.13122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
DGIKEIRLAPKLGIRVVRRANELGDHDVLESKIAAANQVERHPSAVLGNR
QGLARAWYSAAGKCRP
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mRNA from alignment at H-paniculata_contig560:22807..23337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig560.13122.1 ID=mRNA_H-paniculata_contig560.13122.1|Name=mRNA_H-paniculata_contig560.13122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig560:22807..23337- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCATTAAAGAAATTCGTTTGGCACCAAAGCTCGGGATTCGAGTTGT
CCGGTAAGTTACATTTTCTCTTATGTTTGTCGTGTGAACTGTAGATCATT
TTCCGATACTCCTACGGAGAGCAATCACCGCGTCATGCACAAATGCCTCC
GCGCTGAGGTTCTATGGCTGAACCCAAGTTGTGTTCCTTCACAATTTCTC
ACGTGTAGCTACAGAGGGCGCGTGTAACGACAGTTGATTCGCCCTTTGAC
AGGTACTGTTTACACTGTCAGGCGCGAACATAGCTTAAGGTTGCCTCACT
ACTGCTGCTACTGTCAACGAGGGGCTTCACTTCTGTCTGATCACCATGCT
GTTTGACCTCCTTGCGCTGCGTGTTTATAACTAGGAGGGCCAACGAACTT
GGAGACCATGACGTCTTGGAGAGCAAGATTGCAGCAGCAAACCAAGTTGA
ACGCCACCCATCCGCCGTACTCGGAAATCGTCAAGGGCTTGCCAGGGCTT
GGTATTCAGCAGCAGGAAAATGTAGACCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig560:22807..23337-

>mRNA_H-paniculata_contig560.13122.1 ID=mRNA_H-paniculata_contig560.13122.1|Name=mRNA_H-paniculata_contig560.13122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig560:22807..23337- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCATTAAAGAAATTCGTTTGGCACCAAAGCTCGGGATTCGAGTTGT
CCGGACGGCATTAAAGAAATTCGTTTGGCACCAAAGCTCGGGATTCGAGT
TGTCCGGAGGGCCAACGAACTTGGAGACCATGACGTCTTGGAGAGCAAGA
TTGCAGCAGCAAACCAAGTTGAACGCCACCCATCCGCCGTACTCGGAAAT
CGTCAAGGGCTTGCCAGGGCTTGGTATTCAGCAGCAGGAAAATGTAGACC
CGAGGGCCAACGAACTTGGAGACCATGACGTCTTGGAGAGCAAGATTGCA
GCAGCAAACCAAGTTGAACGCCACCCATCCGCCGTACTCGGAAATCGTCA
AGGGCTTGCCAGGGCTTGGTATTCAGCAGCAGGAAAATGTAGACCC
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