mRNA_H-paniculata_contig56.13119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: D8LJ64_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ64_ECTSI) HSP 1 Score: 283 bits (724), Expect = 3.310e-86 Identity = 170/385 (44.16%), Postives = 200/385 (51.95%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQ--------------------------------RLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLAS--------------------------------------------STAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPI-SGLDLSPYSTAGAFLSSSQAAQGQ----------------------------LCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRLMQ 843
QEFLRFFL+G+AEDLN + V + DE +++L A+QQA RAW H ARNDS++T MFCGQLQSRI CLTCGNVS+CFDPFFDLSVPL S S A TLE CL+AF+ EETLDG+NRP+C+ CRKRR S K L++HRFPP+LVIHLKRFQY S+SR K+ TAVDFPI S LDL PYST A SS L LY VCNH GGL GGHYTAHCR G S + G+W+TFDD RVS V+ +R+GG+AAYVLFYRL++
Sbjct: 418 QEFLRFFLDGMAEDLNTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQELTDEQISRLTAEQQADRAWAQHRARNDSDITGMFCGQLQSRISCLTCGNVSFCFDPFFDLSVPLPSGSGRAGAAGXXXXXXXXXXXXRNSRGSHSSXXXXXXSSSAFGGTSAATTTLEDCLRAFSTEETLDGDNRPVCTRCRKRRSSSKGLAVHRFPPILVIHLKRFQYSSTSRTKLATAVDFPIGSELDLVPYSTPAARPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLYELYAVCNHMGGLHGGHYTAHCRSRSGDSGNSGVTT---GEWHTFDDTRVSPVSTSRVGGAAAYVLFYRLLE 799
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6H5KWD5_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD5_9PHAE) HSP 1 Score: 274 bits (701), Expect = 1.750e-81 Identity = 169/389 (43.44%), Postives = 201/389 (51.67%), Query Frame = 1
Query: 7 EFLRFFLNGLAEDLNRQ-----------------------------------RLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAAC---------------------------------------------TLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPI-SGLDLSPYSTAGAFLSSSQAA--------------------------QGQ---LCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRLMQ 843
EFLRFFL+G+AEDLN + +I Q T DE +++L A+QQA RAW H ARN+S++T MFCGQLQSRI CLTCGNVS+CFDPFFDLSVPL S + TLE CL+AF+ EETLDG+NRP+C+ CRKRR S K L++HRFPP+LVIHLKRFQY S+SR K+ TAVDFPI S LDL PYST A SS GQ L LY VCNH GGL GGHYTAHCR G + G+W+TFDD RVS V+ +R+GG+AAYVLFYRL++
Sbjct: 631 EFLRFFLDGMAEDLNTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAINQELT---DEQISRLTAEQQADRAWAQHRARNNSDITGMFCGQLQSRISCLTCGNVSFCFDPFFDLSVPLPSGSGRAGAAGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTLEDCLRAFSTEETLDGDNRPVCTRCRKRRSSSKGLAVHRFPPILVIHLKRFQYSSTSRTKLATAVDFPIGSELDLFPYSTPAARPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQRPPLYELYAVCNHMGGLHGGHYTAHCRSRSRDGGNGGVTA---GEWHTFDDTRVSPVSTSRVGGAAAYVLFYRLLE 1013
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: E0W2N3_PEDHC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0W2N3_PEDHC) HSP 1 Score: 222 bits (566), Expect = 4.580e-66 Identity = 121/284 (42.61%), Postives = 161/284 (56.69%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRLMQRGDH 855
QEFLR+ L GL ED+NR + PQ Q+ T I D L +Q+AT AW +L +DS+V +F GQL+S + C CG+ S FDPF+DLS+P+ S T L+ CL AFTKEE LDGE +P CS C RRK KS SI +FP +LV+HLKRF R K+ VDFP++ LDLSPY+ + QG LY + NH+G GGHYTA+C+H G+W+ ++D+RVS+++ + AYVLFY L + H
Sbjct: 216 QEFLRYLLEGLHEDVNRVTVKPQ--------------QILTDIDDS----LSDNQKATEAWKRYLRMDDSKVVDIFVGQLKSTLQCTVCGHCSVTFDPFWDLSLPVPSRTGQPKLQSCLDAFTKEEVLDGEEKPTCSKCETRRKCTKSFSIQKFPKILVLHLKRFSPTERYRGKLSITVDFPLTNLDLSPYA--------ANKGQGCTYNLYAISNHSGTAYGGHYTAYCKHPYS------------GNWHEYNDSRVSSLSSRSVVSGEAYVLFYELATQTSH 461
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A7S2V666_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V666_9STRA) HSP 1 Score: 217 bits (552), Expect = 5.230e-65 Identity = 126/299 (42.14%), Postives = 166/299 (55.52%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASS----------------------TAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYR 834
QEF+RF L+GL EDL RQ P + + E L QQ+ W HL RNDS +T++FCGQL SR+ CL C VS CFDPF DLSVP+ T +C L CL++F+KEE LD ENR C CR+RRK K LS++RFPP+LVIH+KRFQY +R+K+ T ++FP++GLDLS +T + + A + LY V NH GGL GGHYTAHC + + WY F+D+ VS++ ++ GS+AYVLFY+
Sbjct: 94 QEFMRFLLDGLNEDL-RQIWDQSP---------PEVKDPDPPVSAEHLNVEALSQQS---WQRHLYRNDSFLTNLFCGQLMSRVECLECHFVSLCFDPFLDLSVPIPKKSQVKERRTSSRMASTFPLSNGITQSCPLSACLESFSKEEVLDQENRFQCDRCRQRRKCVKRLSVYRFPPLLVIHIKRFQYTEYNRDKLGTVINFPLTGLDLSSIATGNSKTVNGLAP---VYDLYAVSNHMGGLGGGHYTAHCMNRFDRK------------WYNFNDSNVSSIKVDQLSGSSAYVLFYQ 364
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6A4W3C4_AMPAM (Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W3C4_AMPAM) HSP 1 Score: 213 bits (542), Expect = 5.060e-64 Identity = 117/280 (41.79%), Postives = 154/280 (55.00%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
QEFLR+ L GL ED+NR P+P + T I D L A Q++ AW L +S+ +F GQL+S + C CG+ S FDPF+DLS+P+ S + L+ C FTKEE LDG+ +P CS C+KR+K KS SI +FP +LV+HLKRF R K+ T VDF ++GLDLSPYS A CR LYGV NH+G L GHYTA+CRH ++ WY ++D+RV +N + AYVLF+ L
Sbjct: 85 QEFLRYLLEGLHEDVNRVTSRPKP--------------ITTDIDDS----LSASQKSMEAWKRFLRLENSKFVDLFVGQLKSTLRCTVCGHASVTFDPFWDLSLPIPSRSGQVRLQACFDLFTKEEVLDGDEKPTCSKCQKRQKCTKSFSIQKFPRILVVHLKRFSPQERFRGKLNTTVDFSVNGLDLSPYSAGQA-----------PCRYNLYGVANHSGTLFSGHYTAYCRHPYTAE------------WYEYNDSRVHVMNQRNVNSGEAYVLFFEL 323
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: UPI001884F404 (ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884F404) HSP 1 Score: 215 bits (548), Expect = 7.830e-64 Identity = 119/280 (42.50%), Postives = 157/280 (56.07%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
QEFLR+ L GL ED+NR P+P + T I D L QQ+ AW L +S+ +F GQL+S + C CG+ S FDPF+DLS+P+ S T L+ C FTKEE LDG+ +P C+ C+KR++ K SI +FP +LV+HLKRF R K+ AVDFP+SGLDLSPYS A QG C+ LYGV NH+G L GHYTA+C+H + GDWY ++D+RV ++ + S AYVLF+ L
Sbjct: 177 QEFLRYLLEGLHEDVNRVTSRPRP--------------ITTDIDDS----LSTSQQSMEAWKRFLRLENSKFVDLFVGQLKSTLRCTVCGHASVTFDPFWDLSLPIPSKTGQVRLQACFDLFTKEEVLDGDEKPTCAKCQKRQRCTKGFSIQKFPRILVVHLKRFSPQERFRGKLGCAVDFPVSGLDLSPYS----------AGQGP-CKYNLYGVANHSGTLFSGHYTAYCQHPLS------------GDWYEYNDSRVRPISSRTVSSSEAYVLFFEL 415
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6A4VFW2_AMPAM (Ubiquitin carboxyl-terminal hydrolase 2 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VFW2_AMPAM) HSP 1 Score: 212 bits (539), Expect = 1.430e-63 Identity = 118/281 (41.99%), Postives = 155/281 (55.16%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQL-CR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
QEFLR+ L GL ED+NR P+P + T I D L A Q++ AW L +S+ +F GQL+S + C CG+ S FDPF+DLS+P+ S + L+ C FTKEE LDG+ +P CS C+KR+K KS SI +FP +LV+HLKRF R K+ T VDF ++GLDLSPYS GQ CR LYGV NH+G L GHYTA+CRH ++ WY ++D+RV +N + AYVLF+ L
Sbjct: 85 QEFLRYLLEGLHEDVNRVTSRPKP--------------ITTDIDDS----LSASQKSMEAWKRFLRLENSKFVDLFVGQLKSTLRCTVCGHASVTFDPFWDLSLPIPSRSGQVRLQACFDLFTKEEVLDGDEKPTCSKCQKRQKCTKSFSIQKFPRILVVHLKRFSPQERFRGKLNTTVDFSVNGLDLSPYSA------------GQTPCRYNLYGVANHSGTLFSGHYTAYCRHPYTAE------------WYEYNDSRVHVMNQRNVNSGEAYVLFFEL 323
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: T1ITH6_STRMM (USP domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1ITH6_STRMM) HSP 1 Score: 210 bits (534), Expect = 2.190e-62 Identity = 115/278 (41.37%), Postives = 162/278 (58.27%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
QEFLR+ L GL ED+NR P+P + T I DE+ ++ Q+A AW +L +DS++ +F GQL+S + C CG+ S FDPF+DLS+P+ T L+ C FTKEE LDG+ +P CS C+ RRK KS++I +FP +LVIHLKRF R K+ T +DFP++ LDLSPY +S+S +Q + LY V NH+G + GHYTA+C++ S DW+ F+D+RVS ++ + S AYVLFY +
Sbjct: 117 QEFLRYLLQGLHEDVNRVTSKPKP--------------ILTDI-DESYSET---QKAAEAWRRYLRIDDSKIVEIFVGQLKSCLQCTVCGHCSVTFDPFWDLSLPIPKGTGQVKLQQCFDFFTKEEVLDGDEKPTCSKCKTRRKCTKSMTIFKFPRILVIHLKRFAPTERFRSKLSTLIDFPLTNLDLSPY------MSTSSKSQPCVYNLYAVSNHSGTIYSGHYTAYCKNPYTS------------DWHDFNDSRVSQLSAGSVVSSEAYVLFYEI 358
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: U4TY61_DENPD (USP domain-containing protein n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TY61_DENPD) HSP 1 Score: 208 bits (529), Expect = 2.540e-62 Identity = 121/278 (43.53%), Postives = 159/278 (57.19%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLAS--STAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFY 831
QEFLR+FL GL ED+NR P+P + T I D LP ++AT AW +L DS + F GQL+S + C CG+ S FDPF+DLS+PL S ++ A L CL+AFTKEETLDG+ +P C+ C++RR+ KS SI RFP VLVIHLKRF R K+ T V+FP+ GLDL+PY+ S +Q+ LY V H+G GHYTAHC+ +P DG W+ ++D+RVS + + AYVLFY
Sbjct: 56 QEFLRYFLEGLHEDVNRVTSKPKP--------------ITTDIEDS----LPDAEKATEAWRRYLRSEDSLIVDAFVGQLKSTLKCTHCGHCSVTFDPFWDLSLPLPSGRNSGALRLSHCLEAFTKEETLDGDEKPKCAKCKERRRCTKSFSIQRFPQVLVIHLKRFSPLERFRGKLNTLVEFPLEGLDLTPYA------SEAQSGPSPRYNLYAVSEHSGTPYSGHYTAHCK-----------NPIDGR-WHEYNDSRVSAASGRSAVSAEAYVLFY 297
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6A4WK13_AMPAM (Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WK13_AMPAM) HSP 1 Score: 211 bits (538), Expect = 2.750e-62 Identity = 117/281 (41.64%), Postives = 156/281 (55.52%), Query Frame = 1
Query: 4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQL-CR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
QEFLR+ L GL ED+NR P+P + T I D L A Q++ AW L +S+ +F GQL++ + C CG+ S FDPF+DLS+P+ S + L+ C FTKEE LDG+ +P CS C+KR+K +SLSI +FP +LV+HLKRF R K+ T VDF ++GLDLSPYS GQ CR LYGV NH+G L GHYTAHCRH ++ WY ++D+RV ++ + AYVLF+ L
Sbjct: 176 QEFLRYLLQGLHEDVNRVTSRPKP--------------ITTDIDDS----LSASQKSMEAWKRFLRLENSKFVDLFVGQLKATLRCTVCGHASVTFDPFWDLSLPIPSRSGQVRLQACFDLFTKEEVLDGDEKPTCSKCQKRQKCTRSLSIQKFPRILVVHLKRFSPQERFRGKLNTTVDFSVNGLDLSPYSA------------GQTPCRYSLYGVANHSGTLLSGHYTAHCRHPYTAE------------WYEYNDSRVHVMDQRNVNSGKAYVLFFEL 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig56.13119.1 >prot_H-paniculata_contig56.13119.1 ID=prot_H-paniculata_contig56.13119.1|Name=mRNA_H-paniculata_contig56.13119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=288bp MQEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAback to top mRNA from alignment at H-paniculata_contig56:43356..44498+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig56.13119.1 ID=mRNA_H-paniculata_contig56.13119.1|Name=mRNA_H-paniculata_contig56.13119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1143bp|location=Sequence derived from alignment at H-paniculata_contig56:43356..44498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig56:43356..44498+ >mRNA_H-paniculata_contig56.13119.1 ID=mRNA_H-paniculata_contig56.13119.1|Name=mRNA_H-paniculata_contig56.13119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at H-paniculata_contig56:43356..44498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |