mRNA_H-paniculata_contig56.13119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56.13119.1
Unique NamemRNA_H-paniculata_contig56.13119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: D8LJ64_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ64_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.310e-86
Identity = 170/385 (44.16%), Postives = 200/385 (51.95%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQ--------------------------------RLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLAS--------------------------------------------STAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPI-SGLDLSPYSTAGAFLSSSQAAQGQ----------------------------LCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRLMQ 843
            QEFLRFFL+G+AEDLN +                                                    V   + DE +++L A+QQA RAW  H ARNDS++T MFCGQLQSRI CLTCGNVS+CFDPFFDLSVPL S                                            S A  TLE CL+AF+ EETLDG+NRP+C+ CRKRR S K L++HRFPP+LVIHLKRFQY S+SR K+ TAVDFPI S LDL PYST  A  SS                                   L  LY VCNH GGL GGHYTAHCR      G S  +    G+W+TFDD RVS V+ +R+GG+AAYVLFYRL++
Sbjct:  418 QEFLRFFLDGMAEDLNTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNQELTDEQISRLTAEQQADRAWAQHRARNDSDITGMFCGQLQSRISCLTCGNVSFCFDPFFDLSVPLPSGSGRAGAAGXXXXXXXXXXXXRNSRGSHSSXXXXXXSSSAFGGTSAATTTLEDCLRAFSTEETLDGDNRPVCTRCRKRRSSSKGLAVHRFPPILVIHLKRFQYSSTSRTKLATAVDFPIGSELDLVPYSTPAARPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLYELYAVCNHMGGLHGGHYTAHCRSRSGDSGNSGVTT---GEWHTFDDTRVSPVSTSRVGGAAAYVLFYRLLE 799          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6H5KWD5_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD5_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.750e-81
Identity = 169/389 (43.44%), Postives = 201/389 (51.67%), Query Frame = 1
Query:    7 EFLRFFLNGLAEDLNRQ-----------------------------------RLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAAC---------------------------------------------TLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPI-SGLDLSPYSTAGAFLSSSQAA--------------------------QGQ---LCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRLMQ 843
            EFLRFFL+G+AEDLN +                                                   +I Q  T   DE +++L A+QQA RAW  H ARN+S++T MFCGQLQSRI CLTCGNVS+CFDPFFDLSVPL S +                                                TLE CL+AF+ EETLDG+NRP+C+ CRKRR S K L++HRFPP+LVIHLKRFQY S+SR K+ TAVDFPI S LDL PYST  A  SS                               GQ   L  LY VCNH GGL GGHYTAHCR      G    +    G+W+TFDD RVS V+ +R+GG+AAYVLFYRL++
Sbjct:  631 EFLRFFLDGMAEDLNTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAINQELT---DEQISRLTAEQQADRAWAQHRARNNSDITGMFCGQLQSRISCLTCGNVSFCFDPFFDLSVPLPSGSGRAGAAGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTLEDCLRAFSTEETLDGDNRPVCTRCRKRRSSSKGLAVHRFPPILVIHLKRFQYSSTSRTKLATAVDFPIGSELDLFPYSTPAARPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQRPPLYELYAVCNHMGGLHGGHYTAHCRSRSRDGGNGGVTA---GEWHTFDDTRVSPVSTSRVGGAAAYVLFYRLLE 1013          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: E0W2N3_PEDHC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0W2N3_PEDHC)

HSP 1 Score: 222 bits (566), Expect = 4.580e-66
Identity = 121/284 (42.61%), Postives = 161/284 (56.69%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRLMQRGDH 855
            QEFLR+ L GL ED+NR  + PQ              Q+ T I D     L  +Q+AT AW  +L  +DS+V  +F GQL+S + C  CG+ S  FDPF+DLS+P+ S T    L+ CL AFTKEE LDGE +P CS C  RRK  KS SI +FP +LV+HLKRF      R K+   VDFP++ LDLSPY+        +   QG    LY + NH+G   GGHYTA+C+H               G+W+ ++D+RVS+++   +    AYVLFY L  +  H
Sbjct:  216 QEFLRYLLEGLHEDVNRVTVKPQ--------------QILTDIDDS----LSDNQKATEAWKRYLRMDDSKVVDIFVGQLKSTLQCTVCGHCSVTFDPFWDLSLPVPSRTGQPKLQSCLDAFTKEEVLDGEEKPTCSKCETRRKCTKSFSIQKFPKILVLHLKRFSPTERYRGKLSITVDFPLTNLDLSPYA--------ANKGQGCTYNLYAISNHSGTAYGGHYTAYCKHPYS------------GNWHEYNDSRVSSLSSRSVVSGEAYVLFYELATQTSH 461          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A7S2V666_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V666_9STRA)

HSP 1 Score: 217 bits (552), Expect = 5.230e-65
Identity = 126/299 (42.14%), Postives = 166/299 (55.52%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASS----------------------TAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYR 834
            QEF+RF L+GL EDL RQ     P           +      +  E L      QQ+   W  HL RNDS +T++FCGQL SR+ CL C  VS CFDPF DLSVP+                         T +C L  CL++F+KEE LD ENR  C  CR+RRK  K LS++RFPP+LVIH+KRFQY   +R+K+ T ++FP++GLDLS  +T  +   +  A    +  LY V NH GGL GGHYTAHC +    +            WY F+D+ VS++   ++ GS+AYVLFY+
Sbjct:   94 QEFMRFLLDGLNEDL-RQIWDQSP---------PEVKDPDPPVSAEHLNVEALSQQS---WQRHLYRNDSFLTNLFCGQLMSRVECLECHFVSLCFDPFLDLSVPIPKKSQVKERRTSSRMASTFPLSNGITQSCPLSACLESFSKEEVLDQENRFQCDRCRQRRKCVKRLSVYRFPPLLVIHIKRFQYTEYNRDKLGTVINFPLTGLDLSSIATGNSKTVNGLAP---VYDLYAVSNHMGGLGGGHYTAHCMNRFDRK------------WYNFNDSNVSSIKVDQLSGSSAYVLFYQ 364          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6A4W3C4_AMPAM (Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W3C4_AMPAM)

HSP 1 Score: 213 bits (542), Expect = 5.060e-64
Identity = 117/280 (41.79%), Postives = 154/280 (55.00%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
            QEFLR+ L GL ED+NR    P+P              + T I D     L A Q++  AW   L   +S+   +F GQL+S + C  CG+ S  FDPF+DLS+P+ S +    L+ C   FTKEE LDG+ +P CS C+KR+K  KS SI +FP +LV+HLKRF      R K+ T VDF ++GLDLSPYS   A            CR  LYGV NH+G L  GHYTA+CRH   ++            WY ++D+RV  +N   +    AYVLF+ L
Sbjct:   85 QEFLRYLLEGLHEDVNRVTSRPKP--------------ITTDIDDS----LSASQKSMEAWKRFLRLENSKFVDLFVGQLKSTLRCTVCGHASVTFDPFWDLSLPIPSRSGQVRLQACFDLFTKEEVLDGDEKPTCSKCQKRQKCTKSFSIQKFPRILVVHLKRFSPQERFRGKLNTTVDFSVNGLDLSPYSAGQA-----------PCRYNLYGVANHSGTLFSGHYTAYCRHPYTAE------------WYEYNDSRVHVMNQRNVNSGEAYVLFFEL 323          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: UPI001884F404 (ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884F404)

HSP 1 Score: 215 bits (548), Expect = 7.830e-64
Identity = 119/280 (42.50%), Postives = 157/280 (56.07%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
            QEFLR+ L GL ED+NR    P+P              + T I D     L   QQ+  AW   L   +S+   +F GQL+S + C  CG+ S  FDPF+DLS+P+ S T    L+ C   FTKEE LDG+ +P C+ C+KR++  K  SI +FP +LV+HLKRF      R K+  AVDFP+SGLDLSPYS          A QG  C+  LYGV NH+G L  GHYTA+C+H +             GDWY ++D+RV  ++   +  S AYVLF+ L
Sbjct:  177 QEFLRYLLEGLHEDVNRVTSRPRP--------------ITTDIDDS----LSTSQQSMEAWKRFLRLENSKFVDLFVGQLKSTLRCTVCGHASVTFDPFWDLSLPIPSKTGQVRLQACFDLFTKEEVLDGDEKPTCAKCQKRQRCTKGFSIQKFPRILVVHLKRFSPQERFRGKLGCAVDFPVSGLDLSPYS----------AGQGP-CKYNLYGVANHSGTLFSGHYTAYCQHPLS------------GDWYEYNDSRVRPISSRTVSSSEAYVLFFEL 415          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6A4VFW2_AMPAM (Ubiquitin carboxyl-terminal hydrolase 2 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VFW2_AMPAM)

HSP 1 Score: 212 bits (539), Expect = 1.430e-63
Identity = 118/281 (41.99%), Postives = 155/281 (55.16%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQL-CR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
            QEFLR+ L GL ED+NR    P+P              + T I D     L A Q++  AW   L   +S+   +F GQL+S + C  CG+ S  FDPF+DLS+P+ S +    L+ C   FTKEE LDG+ +P CS C+KR+K  KS SI +FP +LV+HLKRF      R K+ T VDF ++GLDLSPYS             GQ  CR  LYGV NH+G L  GHYTA+CRH   ++            WY ++D+RV  +N   +    AYVLF+ L
Sbjct:   85 QEFLRYLLEGLHEDVNRVTSRPKP--------------ITTDIDDS----LSASQKSMEAWKRFLRLENSKFVDLFVGQLKSTLRCTVCGHASVTFDPFWDLSLPIPSRSGQVRLQACFDLFTKEEVLDGDEKPTCSKCQKRQKCTKSFSIQKFPRILVVHLKRFSPQERFRGKLNTTVDFSVNGLDLSPYSA------------GQTPCRYNLYGVANHSGTLFSGHYTAYCRHPYTAE------------WYEYNDSRVHVMNQRNVNSGEAYVLFFEL 323          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: T1ITH6_STRMM (USP domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1ITH6_STRMM)

HSP 1 Score: 210 bits (534), Expect = 2.190e-62
Identity = 115/278 (41.37%), Postives = 162/278 (58.27%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
            QEFLR+ L GL ED+NR    P+P              + T I DE+ ++    Q+A  AW  +L  +DS++  +F GQL+S + C  CG+ S  FDPF+DLS+P+   T    L+ C   FTKEE LDG+ +P CS C+ RRK  KS++I +FP +LVIHLKRF      R K+ T +DFP++ LDLSPY      +S+S  +Q  +  LY V NH+G +  GHYTA+C++   S            DW+ F+D+RVS ++   +  S AYVLFY +
Sbjct:  117 QEFLRYLLQGLHEDVNRVTSKPKP--------------ILTDI-DESYSET---QKAAEAWRRYLRIDDSKIVEIFVGQLKSCLQCTVCGHCSVTFDPFWDLSLPIPKGTGQVKLQQCFDFFTKEEVLDGDEKPTCSKCKTRRKCTKSMTIFKFPRILVIHLKRFAPTERFRSKLSTLIDFPLTNLDLSPY------MSTSSKSQPCVYNLYAVSNHSGTIYSGHYTAYCKNPYTS------------DWHDFNDSRVSQLSAGSVVSSEAYVLFYEI 358          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: U4TY61_DENPD (USP domain-containing protein n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TY61_DENPD)

HSP 1 Score: 208 bits (529), Expect = 2.540e-62
Identity = 121/278 (43.53%), Postives = 159/278 (57.19%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLAS--STAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFY 831
            QEFLR+FL GL ED+NR    P+P              + T I D     LP  ++AT AW  +L   DS +   F GQL+S + C  CG+ S  FDPF+DLS+PL S  ++ A  L  CL+AFTKEETLDG+ +P C+ C++RR+  KS SI RFP VLVIHLKRF      R K+ T V+FP+ GLDL+PY+      S +Q+       LY V  H+G    GHYTAHC+           +P DG  W+ ++D+RVS  +      + AYVLFY
Sbjct:   56 QEFLRYFLEGLHEDVNRVTSKPKP--------------ITTDIEDS----LPDAEKATEAWRRYLRSEDSLIVDAFVGQLKSTLKCTHCGHCSVTFDPFWDLSLPLPSGRNSGALRLSHCLEAFTKEETLDGDEKPKCAKCKERRRCTKSFSIQRFPQVLVIHLKRFSPLERFRGKLNTLVEFPLEGLDLTPYA------SEAQSGPSPRYNLYAVSEHSGTPYSGHYTAHCK-----------NPIDGR-WHEYNDSRVSAASGRSAVSAEAYVLFY 297          
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Match: A0A6A4WK13_AMPAM (Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WK13_AMPAM)

HSP 1 Score: 211 bits (538), Expect = 2.750e-62
Identity = 117/281 (41.64%), Postives = 156/281 (55.52%), Query Frame = 1
Query:    4 QEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALAKLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPFFDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSLSIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLSSSQAAQGQL-CR--LYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGDWYTFDDARVSTVNPARIGGSAAYVLFYRL 837
            QEFLR+ L GL ED+NR    P+P              + T I D     L A Q++  AW   L   +S+   +F GQL++ + C  CG+ S  FDPF+DLS+P+ S +    L+ C   FTKEE LDG+ +P CS C+KR+K  +SLSI +FP +LV+HLKRF      R K+ T VDF ++GLDLSPYS             GQ  CR  LYGV NH+G L  GHYTAHCRH   ++            WY ++D+RV  ++   +    AYVLF+ L
Sbjct:  176 QEFLRYLLQGLHEDVNRVTSRPKP--------------ITTDIDDS----LSASQKSMEAWKRFLRLENSKFVDLFVGQLKATLRCTVCGHASVTFDPFWDLSLPIPSRSGQVRLQACFDLFTKEEVLDGDEKPTCSKCQKRQKCTRSLSIQKFPRILVVHLKRFSPQERFRGKLNTTVDFSVNGLDLSPYSA------------GQTPCRYSLYGVANHSGTLLSGHYTAHCRHPYTAE------------WYEYNDSRVHVMDQRNVNSGKAYVLFFEL 414          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56.13119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ64_ECTSI3.310e-8644.16Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A6H5KWD5_9PHAE1.750e-8143.44USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
E0W2N3_PEDHC4.580e-6642.61Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pedi... [more]
A0A7S2V666_9STRA5.230e-6542.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6A4W3C4_AMPAM5.060e-6441.79Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Am... [more]
UPI001884F4047.830e-6442.50ubiquitin carboxyl-terminal hydrolase 2-like isofo... [more]
A0A6A4VFW2_AMPAM1.430e-6341.99Ubiquitin carboxyl-terminal hydrolase 2 n=3 Tax=Am... [more]
T1ITH6_STRMM2.190e-6241.37USP domain-containing protein n=1 Tax=Strigamia ma... [more]
U4TY61_DENPD2.540e-6243.53USP domain-containing protein n=1 Tax=Dendroctonus... [more]
A0A6A4WK13_AMPAM2.750e-6241.64Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Am... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56contigH-paniculata_contig56:43356..44498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.7
Seed ortholog evalue1.9e-73
Seed eggNOG ortholog2880.D8LJ64
KEGG koko:K11833
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002700,GO:0002701,GO:0002759,GO:0002784,GO:0002785,GO:0002831,GO:0002832,GO:0002920,GO:0002921,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0006464,GO:0006508,GO:0006807,GO:0007563,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008348,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010959,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032879,GO:0036211,GO:0036459,GO:0042176,GO:0043170,GO:0043269,GO:0043271,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044877,GO:0045088,GO:0045732,GO:0045805,GO:0045824,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051051,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051924,GO:0051926,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070628,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080090,GO:0080134,GO:0101005,GO:0140096,GO:1900424,GO:1900425,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1990380,GO:2000026
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1868@1,KOG1868@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons3
Model size864
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56.13119.1prot_H-paniculata_contig56.13119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56 43356..44498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930594.5726454-CDS-H-paniculata_contig56:43355..436861622930594.5726454-CDS-H-paniculata_contig56:43355..43686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56 43356..43686 +
1691481363.9333508-CDS-H-paniculata_contig56:43355..436861691481363.9333508-CDS-H-paniculata_contig56:43355..43686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56 43356..43686 +
1622930594.5979667-CDS-H-paniculata_contig56:43806..441081622930594.5979667-CDS-H-paniculata_contig56:43806..44108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56 43807..44108 +
1691481363.944795-CDS-H-paniculata_contig56:43806..441081691481363.944795-CDS-H-paniculata_contig56:43806..44108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56 43807..44108 +
1622930594.614777-CDS-H-paniculata_contig56:44267..444981622930594.614777-CDS-H-paniculata_contig56:44267..44498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56 44268..44498 +
1691481363.9563184-CDS-H-paniculata_contig56:44267..444981691481363.9563184-CDS-H-paniculata_contig56:44267..44498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56 44268..44498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56.13119.1

>prot_H-paniculata_contig56.13119.1 ID=prot_H-paniculata_contig56.13119.1|Name=mRNA_H-paniculata_contig56.13119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=288bp
MQEFLRFFLNGLAEDLNRQRLGPQPGGGSKGAGMSSIGQVATTIGDEALA
KLPADQQATRAWTLHLARNDSEVTSMFCGQLQSRIFCLTCGNVSYCFDPF
FDLSVPLASSTAACTLEGCLQAFTKEETLDGENRPICSGCRKRRKSEKSL
SIHRFPPVLVIHLKRFQYDSSSREKIETAVDFPISGLDLSPYSTAGAFLS
SSQAAQGQLCRLYGVCNHTGGLEGGHYTAHCRHNVPSQGGSNPSPRDGGD
WYTFDDARVSTVNPARIGGSAAYVLFYRLMQRGDHYG*
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mRNA from alignment at H-paniculata_contig56:43356..44498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56.13119.1 ID=mRNA_H-paniculata_contig56.13119.1|Name=mRNA_H-paniculata_contig56.13119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1143bp|location=Sequence derived from alignment at H-paniculata_contig56:43356..44498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAATTCCTGCGTTTTTTTTTAAACGGTCTGGCGGAGGATCTCAA CCGACAACGGTTGGGACCACAACCAGGAGGTGGTAGCAAAGGCGCGGGAA TGTCGTCTATAGGTCAGGTCGCTACCACTATAGGCGACGAAGCGCTCGCA AAACTTCCTGCAGATCAACAAGCTACCAGAGCATGGACACTACACCTGGC CCGCAACGACAGCGAGGTTACGAGCATGTTTTGCGGACAGTTGCAGAGTC GCATCTTCTGTTTAACTTGCGGCAACGTTAGTTATTGTTTTGATCCTTTC TTTGACCTTTCCGTGCCGCTGGCGTCCTCCAGTCGGAGAGCGGGTATGGT GTCAAAGAAGTTTAGTACAGGCGGCGGTGTGGGTGGAGGGGGTAGGGGCG AGGATGGGCATGTAAACACGAGCGGAGTGTCAACGGCCGGAGGGCAACCA GCGGCTGCATGTACTCTGGAGGGCTGTCTACAGGCATTTACAAAAGAAGA AACGCTAGATGGAGAAAACCGACCGATCTGCTCGGGCTGCCGAAAACGCC GCAAAAGCGAGAAATCCCTTTCAATTCATCGTTTTCCTCCAGTATTGGTT ATCCACCTTAAGCGATTCCAGTACGACTCATCTAGCCGTGAAAAGATTGA AACAGCCGTTGATTTTCCGATTTCCGGCTTAGACCTCTCTCCCTATTCTA CCGCGGGGGCTTTTCTTTCCTCTTCACAGGCGGCTCAGGGGCAGTTGTGT AGAGTTGCTGAAAGCAATACTAGTGCAGAAAGTAGGGCAAATATGCCAGG AGAGTTGAGAAATTCGACAGGAGATGCTGGCAGCAGGAGAGGGCAAGAGC GAGAAGCGTATTCAAGAGATTCCCATAGGAAACATTCATCGTTACAACCG CCATTGTACGAGCTCTACGGTGTTTGTAATCATACTGGGGGTCTTGAGGG CGGGCACTACACTGCCCATTGTCGGCACAACGTCCCTTCACAGGGGGGCA GTAACCCAAGCCCTCGTGACGGTGGGGATTGGTATACCTTCGATGATGCG CGGGTAAGTACGGTGAATCCGGCCCGAATCGGTGGCAGCGCCGCGTATGT ACTGTTTTATCGCCTGATGCAACGTGGCGACCATTATGGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig56:43356..44498+

>mRNA_H-paniculata_contig56.13119.1 ID=mRNA_H-paniculata_contig56.13119.1|Name=mRNA_H-paniculata_contig56.13119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at H-paniculata_contig56:43356..44498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAATTCCTGCGTTTTTTTTTAAACGGTCTGGCGGAGGATCTCAA
CCGACAACGGTTGGGACCACAACCAGGAGGTGGTAGCAAAGGCGCGGGAA
TGTCGTCTATAGGTCAGGTCGCTACCACTATAGGCGACGAAGCGCTCGCA
AAACTTCCTGCAGATCAACAAGCTACCAGAGCATGGACACTACACCTGGC
CCGCAACGACAGCGAGGTTACGAGCATGTTTTGCGGACAGTTGCAGAGTC
GCATCTTCTGTTTAACTTGCGGCAACGTTAGTTATTGTTTTGATCCTTTC
TTTGACCTTTCCGTGCCGCTGGCGTCCTCCAATGCAGGAATTCCTGCGTT
TTTTTTTAAACGGTCTGGCGGAGGATCTCAACCGACAACGGTTGGGACCA
CAACCAGGAGGTGGTAGCAAAGGCGCGGGAATGTCGTCTATAGGTCAGGT
CGCTACCACTATAGGCGACGAAGCGCTCGCAAAACTTCCTGCAGATCAAC
AAGCTACCAGAGCATGGACACTACACCTGGCCCGCAACGACAGCGAGGTT
ACGAGCATGTTTTGCGGACAGTTGCAGAGTCGCATCTTCTGTTTAACTTG
CGGCAACGTTAGTTATTGTTTTGATCCTTTCTTTGACCTTTCCGTGCCGC
TGGCGTCCTCCACGGCTGCATGTACTCTGGAGGGCTGTCTACAGGCATTT
ACAAAAGAAGAAACGCTAGATGGAGAAAACCGACCGATCTGCTCGGGCTG
CCGAAAACGCCGCAAAAGCGAGAAATCCCTTTCAATTCATCGTTTTCCTC
CAGTATTGGTTATCCACCTTAAGCGATTCCAGTACGACTCATCTAGCCGT
GAAAAGATTGAAACAGCCGTTGATTTTCCGATTTCCGGCTTAGACCTCTC
TCCCTATTCTACCGCGGGGGCTTTTCTTTCCTCTTCACAGGCGGCTCAGG
GGCAGTTGTGTAGACGGCTGCATGTACTCTGGAGGGCTGTCTACAGGCAT
TTACAAAAGAAGAAACGCTAGATGGAGAAAACCGACCGATCTGCTCGGGC
TGCCGAAAACGCCGCAAAAGCGAGAAATCCCTTTCAATTCATCGTTTTCC
TCCAGTATTGGTTATCCACCTTAAGCGATTCCAGTACGACTCATCTAGCC
GTGAAAAGATTGAAACAGCCGTTGATTTTCCGATTTCCGGCTTAGACCTC
TCTCCCTATTCTACCGCGGGGGCTTTTCTTTCCTCTTCACAGGCGGCTCA
GGGGCAGTTGTGTAGACTCTACGGTGTTTGTAATCATACTGGGGGTCTTG
AGGGCGGGCACTACACTGCCCATTGTCGGCACAACGTCCCTTCACAGGGG
GGCAGTAACCCAAGCCCTCGTGACGGTGGGGATTGGTATACCTTCGATGA
TGCGCGGGTAAGTACGGTGAATCCGGCCCGAATCGGTGGCAGCGCCGCGT
ATGTACTGTTTTATCGCCTGATGCAACGTGGCGACCATTATGGATGACTC
TACGGTGTTTGTAATCATACTGGGGGTCTTGAGGGCGGGCACTACACTGC
CCATTGTCGGCACAACGTCCCTTCACAGGGGGGCAGTAACCCAAGCCCTC
GTGACGGTGGGGATTGGTATACCTTCGATGATGCGCGGGTAAGTACGGTG
AATCCGGCCCGAATCGGTGGCAGCGCCGCGTATGTACTGTTTTATCGCCT
GATGCAACGTGGCGACCATTATGGATGA
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