mRNA_H-paniculata_contig55981.13116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55981.13116.1
Unique NamemRNA_H-paniculata_contig55981.13116.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: A0A8F0JZX5_9PHAE (Photosystem II reaction center protein I n=26 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0JZX5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.070e-19
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1
Query:   34 MISLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            M+SLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE
Sbjct:    1 MLSLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 41          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: D1J775_ECTSI (Photosystem II reaction center protein I n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J775_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.550e-19
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1
Query:   34 MISLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            MI+LYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE
Sbjct:    1 MITLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 41          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: A0A0S0G9Y3_COSCS (Photosystem II reaction center protein I n=19 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0G9Y3_COSCS)

HSP 1 Score: 75.5 bits (184), Expect = 3.770e-17
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1
Query:   34 MISLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            M+SLYFLKL VYAI+T FSSLFIFGFLSNDPSRNPNRKDFE
Sbjct:    1 MLSLYFLKLLVYAIITSFSSLFIFGFLSNDPSRNPNRKDFE 41          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: PSBI_CYAM1 (Photosystem II reaction center protein I n=3 Tax=Cyanidiaceae TaxID=265316 RepID=PSBI_CYAM1)

HSP 1 Score: 59.3 bits (142), Expect = 9.210e-11
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   52 LKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            LK+FVY  V  FSSLFIFGFLSNDPSRNPNRKD E
Sbjct:    4 LKIFVYTCVIFFSSLFIFGFLSNDPSRNPNRKDLE 38          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: PSBI_CYACA (Photosystem II reaction center protein I n=1 Tax=Cyanidium caldarium TaxID=2771 RepID=PSBI_CYACA)

HSP 1 Score: 58.2 bits (139), Expect = 2.640e-10
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   52 LKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            LK+FVY+ V  F SLFIFGFLSNDPSRNPNRKD E
Sbjct:    4 LKIFVYSCVAFFCSLFIFGFLSNDPSRNPNRKDLE 38          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: B7T201_VAULI (Photosystem II reaction center protein I n=3 Tax=Stramenopiles TaxID=33634 RepID=B7T201_VAULI)

HSP 1 Score: 57.4 bits (137), Expect = 5.340e-10
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   52 LKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            LK+ VY  V+ FSSLFIFGFLSNDPSRNPNRKD E
Sbjct:    4 LKILVYITVSFFSSLFIFGFLSNDPSRNPNRKDLE 38          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: A0A059XHT5_9RHOD (Photosystem II reaction center protein I n=1 Tax=Pyropia fucicola TaxID=144551 RepID=A0A059XHT5_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   40 SLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            +++ LK+FVY  V  F SLF+FGFLSNDPSRNPNRKD E
Sbjct:   16 NMFTLKIFVYTTVIFFISLFVFGFLSNDPSRNPNRKDLE 54          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: PSBI_NEOYE (Photosystem II reaction center protein I n=15 Tax=Rhodophyta TaxID=2763 RepID=PSBI_NEOYE)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-9
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   52 LKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            LK+FVY  V  F SLF+FGFLSNDPSRNPNRKD E
Sbjct:    4 LKIFVYTTVIFFISLFVFGFLSNDPSRNPNRKDLE 38          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: A0A1Z1XAZ0_9RHOD (Photosystem II reaction center protein I n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A1Z1XAZ0_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 1.380e-9
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   52 LKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            LK+FVY  V  F SLF+FGFLSNDPSRNPNRKD E
Sbjct:   16 LKIFVYTAVIFFISLFVFGFLSNDPSRNPNRKDLE 50          
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Match: A0A6P0SHT5_9CYAN (Photosystem II reaction center protein I n=2 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SHT5_9CYAN)

HSP 1 Score: 55.8 bits (133), Expect = 2.180e-9
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   52 LKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKDFE 156
            LK+ VY +V+ F  LF+FGFLSNDPSRNPNR+DFE
Sbjct:    4 LKIIVYLVVSFFIGLFVFGFLSNDPSRNPNRRDFE 38          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55981.13116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZX5_9PHAE5.070e-1997.56Photosystem II reaction center protein I n=26 Tax=... [more]
D1J775_ECTSI5.550e-1997.56Photosystem II reaction center protein I n=6 Tax=P... [more]
A0A0S0G9Y3_COSCS3.770e-1790.24Photosystem II reaction center protein I n=19 Tax=... [more]
PSBI_CYAM19.210e-1182.86Photosystem II reaction center protein I n=3 Tax=C... [more]
PSBI_CYACA2.640e-1080.00Photosystem II reaction center protein I n=1 Tax=C... [more]
B7T201_VAULI5.340e-1080.00Photosystem II reaction center protein I n=3 Tax=S... [more]
A0A059XHT5_9RHOD1.060e-969.23Photosystem II reaction center protein I n=1 Tax=P... [more]
PSBI_NEOYE1.080e-977.14Photosystem II reaction center protein I n=15 Tax=... [more]
A0A1Z1XAZ0_9RHOD1.380e-977.14Photosystem II reaction center protein I n=1 Tax=C... [more]
A0A6P0SHT5_9CYAN2.180e-971.43Photosystem II reaction center protein I n=2 Tax=u... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55981contigH-paniculata_contig55981:517..675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930593.76865-CDS-H-paniculata_contig55981:516..6751622930593.76865-CDS-H-paniculata_contig55981:516..675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55981 517..675 -
1691481363.5163739-CDS-H-paniculata_contig55981:516..6751691481363.5163739-CDS-H-paniculata_contig55981:516..675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55981 517..675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55981.13116.1prot_H-paniculata_contig55981.13116.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55981 517..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55981.13116.1

>prot_H-paniculata_contig55981.13116.1 ID=prot_H-paniculata_contig55981.13116.1|Name=mRNA_H-paniculata_contig55981.13116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
ITLNKFYRRVLMISLYFLKLFVYAIVTGFSSLFIFGFLSNDPSRNPNRKD
FE*
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mRNA from alignment at H-paniculata_contig55981:517..675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55981.13116.1 ID=mRNA_H-paniculata_contig55981.13116.1|Name=mRNA_H-paniculata_contig55981.13116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig55981:517..675- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTACTTTAAATAAATTTTATCGGAGAGTCCTTATGATTAGTTTATATTT CTTAAAATTATTTGTTTATGCTATTGTTACAGGGTTTAGTTCACTCTTTA TATTTGGATTTTTATCTAATGATCCTTCAAGAAATCCAAATCGAAAAGAT TTTGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55981:517..675-

>mRNA_H-paniculata_contig55981.13116.1 ID=mRNA_H-paniculata_contig55981.13116.1|Name=mRNA_H-paniculata_contig55981.13116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig55981:517..675- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTACTTTAAATAAATTTTATCGGAGAGTCCTTATGATTAGTTTATATTT
CTTAAAATTATTTGTTTATGCTATTGTTACAGGGTTTAGTTCACTCTTTA
TATTTGGATTTTTATCTAATGATCCTTCAAGAAATCCAAATCGAAAAGAT
TTTGAATAAATTACTTTAAATAAATTTTATCGGAGAGTCCTTATGATTAG
TTTATATTTCTTAAAATTATTTGTTTATGCTATTGTTACAGGGTTTAGTT
CACTCTTTATATTTGGATTTTTATCTAATGATCCTTCAAGAAATCCAAAT
CGAAAAGATTTTGAATAA
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