mRNA_H-paniculata_contig5595.13111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5595.13111.1
Unique NamemRNA_H-paniculata_contig5595.13111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A6H5L3R0_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R0_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.500e-116
Identity = 162/207 (78.26%), Postives = 187/207 (90.34%), Query Frame = 3 
Query:  951 DLREDGTPNYFNWKELFPELKVLVEGLADISAECIQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAFR 1571
            ++ +D TPNY++W+ LFPELKVLV+GL++I+AEC QV+ W+AWPEKHY+EGG QDWKVFPFVHTFPAYDE+RRTWI+STC  CP T  +LRR+PNIRTALFSRLG GSRISGHRGWADLANHVLRCHL LKVP+DGPCGLWVN EV +H EGEIIVFDDSKLH+AFN S+G+R VLIVDILRPPG+ LGTA+G HTPELD+FIDAFR
Sbjct:  105 EVPQDDTPNYYDWQYLFPELKVLVDGLSEIAAECAQVAAWKAWPEKHYDEGGGQDWKVFPFVHTFPAYDEARRTWIDSTCGRCPATAAILRRLPNIRTALFSRLGGGSRISGHRGWADLANHVLRCHLPLKVPSDGPCGLWVNEEVRHHVEGEIIVFDDSKLHKAFNESSGERLVLIVDILRPPGVPLGTADGEHTPELDAFIDAFR 311
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: D7FJE5_ECTSI (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE5_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 6.570e-83
Identity = 123/151 (81.46%), Postives = 136/151 (90.07%), Query Frame = 3 
Query: 1119 KVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAFR 1571
            +VFPFVHTFPAYDE+RRTWI+STC  CP T  +LRR+PNIRTALFSRLG GSRISGHRGWADLANHVLRCHL LKVP+DGPCGLWVN EV +H EGEIIVFDDSKLH+AFN S+ +R VLIVDILRPPG+ LGTA+G HTPELD+FIDAFR
Sbjct:    5 RVFPFVHTFPAYDEARRTWIDSTCGRCPATAAILRRLPNIRTALFSRLGGGSRISGHRGWADLANHVLRCHLPLKVPSDGPCGLWVNEEVRHHVEGEIIVFDDSKLHKAFNESSEERLVLIVDILRPPGVPLGTADGEHTPELDAFIDAFR 155
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A6V1W3Q8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3Q8_HETAK)

HSP 1 Score: 262 bits (670), Expect = 4.130e-78
Identity = 117/197 (59.39%), Postives = 144/197 (73.10%), Query Frame = 3 
Query:  978 YFNWKELFPELKVLVEGLADISAECIQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAF 1568
            Y++W+EL+P+L+VL++   DI  E   V+ W AWPE H+ EGG  DWKVFPF + FPA DESR  W+E TC+ CP T E+L++IP +RTALFSRLG G+R+S H GW DLANHVLR HL L+VP  G CGLWV G+V  H   +I VFDDSK H+AFN+S  +R VLIVD+ RP G+  G A GGHT ELD FI AF
Sbjct:   57 YYDWRELYPQLQVLIDNYEDILQEAEAVTGWHAWPEYHFREGGNNDWKVFPFAYCFPADDESRLAWVEKTCSYCPKTVEVLKQIPGLRTALFSRLGPGTRLSTHTGWEDLANHVLRAHLGLRVPPGGRCGLWVEGKVELHEARQINVFDDSKRHKAFNDSAEERLVLIVDLARPEGVPRGRAVGGHTAELDRFIGAF 253
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A7S2UZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZL3_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.120e-77
Identity = 120/208 (57.69%), Postives = 156/208 (75.00%), Query Frame = 3 
Query:  960 EDGT-PNYFNWKELFPELKVLVEGLADISAECIQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGP--CGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFID-AFR 1571
            ED T P +++W++ +PEL++L++    I  E   +  W+AWPE H+EEGG  DWKVFPF+HTFPA       W+  TC  CP T  LLR++PN+RTALFSRLG+G+++S HRGWADLAN VLRCHLSLK+P D P  CG+WV G++ +H + EIIVFDDSKLH+AFN S+G+R VLI D++RP  I  G A+G HTPELD+FI+ AFR
Sbjct:   69 EDTTAPCFYDWRQYYPELQLLIDNFDQILEEAQSLIGWKAWPEYHFEEGGGDDWKVFPFLHTFPATSPENAVWVGPTCRKCPKTVSLLRQLPNLRTALFSRLGSGTKLSTHRGWADLANFVLRCHLSLKIP-DPPESCGVWVEGQIQHHRDKEIIVFDDSKLHKAFNTSSGERLVLIFDMIRPNDIPQGRAKGPHTPELDNFIEKAFR 275
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A7S3MI66_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MI66_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.100e-72
Identity = 116/205 (56.59%), Postives = 141/205 (68.78%), Query Frame = 3 
Query:  972 PNYFNWKELFPELKVLVEGLADISAECIQVSNWRAWPEKHYEEGGE----QDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNST-GDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAFR 1571
            P ++NW+ELFPEL+VL+  +A I  E   +  W  WPE H+  G +    +DW VFP +HTFPAY      W+ STCA CP T +LL+ IP +RTALFSRLG G+++S H GWADLAN+VLRCHL L VPTDG CGL V+GE+  H    I+VFDDSK HRAFNNST  +R VLI D+ RP  I  GTA G HT ELD FI  F+
Sbjct:   31 PCFYNWRELFPELEVLLNNIAVIKEESKSIGQWIPWPEDHFTLGDDVENSKDWTVFPLLHTFPAYCPENSKWVGSTCARCPETVKLLKSIPTLRTALFSRLGPGTKLSSHTGWADLANYVLRCHLCLDVPTDGTCGLLVDGEIQYHRPNHILVFDDSKPHRAFNNSTLNNRTVLIFDLWRPQDIPRGTATGNHTDELDGFISQFK 235
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A7S2SV16_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV16_9STRA)

HSP 1 Score: 252 bits (644), Expect = 5.970e-72
Identity = 115/200 (57.50%), Postives = 148/200 (74.00%), Query Frame = 3 
Query:  975 NYFNWKELFPELKVLVEGLADISAEC--IQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAF 1568
            ++ +W+ ++PEL++LV+ L  I A+   IQ S+W+ WPE HY +GG +DWK+FPF HTFPA+D +RR +IE TC  CP T  LL+++P++RTALFSRLG   RIS HRGWADLANHVLRCHLSL VP    C +WV GEV +H EG +IVFDDSKLH+A N +  DR VLIVD+ RP  + LG A G  TPEL++ I+ F
Sbjct:  236 SFHSWRAVYPELQLLVDHLDVILADARRIQGSSWKPWPEMHYSDGGSEDWKIFPFCHTFPAHDITRRCFIEGTCEFCPGTASLLKQLPSVRTALFSRLGGKGRISAHRGWADLANHVLRCHLSLVVPEKRGCAVWVRGEVQSHEEGGVIVFDDSKLHKACNETVDDRIVLIVDLARPAHLPLGRAVGDRTPELNNLIEYF 435
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A6U0VYJ3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VYJ3_9STRA)

HSP 1 Score: 236 bits (603), Expect = 6.000e-68
Identity = 108/211 (51.18%), Postives = 140/211 (66.35%), Query Frame = 3 
Query:  972 PNYFNWKELFPELKVLVEGLADISAECIQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDG------------PCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAF 1568
            P+++ W+E++P L+ L++   +I AE   +  W  WPE H+ +GG  +W VFP  +TFPA D   + W+E  C  CP TT +LR+IP +RTALFSRLG  +R+SGH GW DLANHVLR HLSL VP                CG+WVN EV  H EG+++VFDDS +H A+N+S  DR VLI+DI RPP +  G A GGHTPELD+FID F
Sbjct:   76 PSFYPWEEVYPFLQPLIDCAEEIKAEAKAIPMWAEWPEYHFRDGGNAEWNVFPLTYTFPATDPHAQRWLEQPCGLCPATTRVLRKIPGLRTALFSRLGPQTRLSGHTGWEDLANHVLRVHLSLTVPKRNRKPSGLAGEDLSSCGVWVNEEVWGHQEGQLLVFDDSLVHGAYNHSDEDRVVLIIDIERPPWLPPGRATGGHTPELDAFIDQF 286
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A836CEF1_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF1_9STRA)

HSP 1 Score: 241 bits (615), Expect = 6.560e-66
Identity = 119/238 (50.00%), Postives = 150/238 (63.03%), Query Frame = 3 
Query:  972 PNYFNWKELFPELKVLVE--GLADISAECIQV-SNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGP------------------------------------CGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAF 1568
            P + +W++++PEL +L+E   L+DI  E   V S W+AWPE HY EGG +DWKV PF H FPA D S+ TW+  TCA CP T  LLR++P +RTALFSRLG G++IS HRGW+DLAN VLRCHL+L VP D P                                    CG+WV G+   H +GEI+VFDDSKLH+A+N+S  +R VLIVD+LRPP +  GTA  G T EL+ FI AF
Sbjct:  359 PPFLDWRDVYPELGILLEPQNLSDIMEEMRSVRSAWKAWPETHYSEGGSEDWKVVPFAHCFPACDASKLTWVPHTCAHCPRTVALLRQLPTLRTALFSRLGGGTKISSHRGWSDLANDVLRCHLALVVPPDDPHSRALKGXXXXXXXXXXXXXXXXXXXXXXXXESDGCCGIWVEGQRRAHRQGEIMVFDDSKLHKAYNHSYHERVVLIVDLLRPPHVPRGTARRGMTAELEGFIAAF 596
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: A0A7S3LIY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIY3_9STRA)

HSP 1 Score: 228 bits (582), Expect = 6.390e-65
Identity = 112/207 (54.11%), Postives = 138/207 (66.67%), Query Frame = 3 
Query:  972 PNYFNWKELFPELKVLVEGLADISAECIQVSN---WRAWPEKHYEEGGEQD--WKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPTDGP--CGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLIVDILRPPGIALGTAEGGHTPELDSFIDAFR 1571
            P Y++WK++FPELK++ +    I  E + +     W  WPE+    G +Q   WKV P ++TFPAYDES   WI S    CP TTELL++IPNIRTALFSRLG  +R+S H+GWADLAN+VLRCHL L VP      CG+WV G V  H  G+++VFDDSK H+AFN S  DR VLI DILRP  I  G A GGHT  LD FI +F+
Sbjct:   82 PRYYDWKKVFPELKIIEDNFKVIQRELVTLMESREWTPWPEERLYNGPQQSGQWKVIPLLYTFPAYDESSSKWITSNNKLCPKTTELLKKIPNIRTALFSRLGGTTRLSQHQGWADLANYVLRCHLPLIVPQPEANLCGMWVEGHVQYHKPGKLLVFDDSKHHKAFNASDQDRMVLIFDILRPKKIPKGLATGGHTEHLDQFISSFQ 288
[Close]
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Match: K3WA84_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA84_GLOUD)

HSP 1 Score: 233 bits (595), Expect = 1.140e-63
Identity = 114/215 (53.02%), Postives = 146/215 (67.91%), Query Frame = 3 
Query:  948 EDLREDGTPNYFNWKELFPELKVLVEGLADISAEC---IQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIESTCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCHLSLKVPT----DGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGD-RFVLIVDILRPPGIALGTAEGGHTPELDSFIDAF 1568
            E++ +D  PNY+ +KEL+P+L+VL +  A I  E    +Q S W  WPEKHY EG + +W+VFPF +TFPAYD S+  W+  TC  CP T E+L+ IP IRTALFS+LG G+ ++ HRGWADL+NH+LRCHL L VPT       C + V GE   H E  IIVFDDSKLH A+N+   D R VLI+D+ RP  +  G A+GGH+ ELD FID F
Sbjct:  333 EEIYDDDLPNYYEYKELYPQLEVLKDNYAVILEEMQAVLQSSTWPFWPEKHYAEG-DNEWRVFPFCYTFPAYDASKTMWVPPTCEMCPRTVEVLKSIPGIRTALFSKLGPGTTLTAHRGWADLSNHILRCHLGLVVPTLDHGKPCCSMVVGGERCAHQERGIIVFDDSKLHFAYNHHDEDTRIVLIIDLYRPDHLPRGRAKGGHSDELDEFIDTF 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5595.13111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3R0_9PHAE1.500e-11678.26Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
D7FJE5_ECTSI6.570e-8381.46Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
A0A6V1W3Q8_HETAK4.130e-7859.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZL3_9STRA3.120e-7757.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3MI66_9STRA5.100e-7256.59Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2SV16_9STRA5.970e-7257.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U0VYJ3_9STRA6.000e-6851.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CEF1_9STRA6.560e-6650.00Asp_Arg_Hydrox domain-containing protein n=1 Tax=T... [more]
A0A7S3LIY3_9STRA6.390e-6554.11Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
K3WA84_GLOUD1.140e-6353.02Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5595contigH-paniculata_contig5595:767..7996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.7
Seed ortholog evalue2.2e-70
Seed eggNOG ortholog2880.D7FJE5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aspartyl/Asparaginyl beta-hydroxylase
EggNOG OGs2S66E@2759,COG3555@1
Ec32 ortholog descriptionIsopenicillin N synthase-like
Ec32 orthologEc-14_006050.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2513
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5595.13111.1prot_H-paniculata_contig5595.13111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5595 1706..7415 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930592.9688396-UTR-H-paniculata_contig5595:766..17051622930592.9688396-UTR-H-paniculata_contig5595:766..1705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5595 767..1705 -
1691481363.186037-UTR-H-paniculata_contig5595:766..17051691481363.186037-UTR-H-paniculata_contig5595:766..1705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5595 767..1705 -
1622930593.0341434-UTR-H-paniculata_contig5595:7415..79961622930593.0341434-UTR-H-paniculata_contig5595:7415..7996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5595 7416..7996 -
1691481363.223654-UTR-H-paniculata_contig5595:7415..79961691481363.223654-UTR-H-paniculata_contig5595:7415..7996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5595 7416..7996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930592.9821944-CDS-H-paniculata_contig5595:1705..18941622930592.9821944-CDS-H-paniculata_contig5595:1705..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5595 1706..1894 -
1691481363.1966858-CDS-H-paniculata_contig5595:1705..18941691481363.1966858-CDS-H-paniculata_contig5595:1705..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5595 1706..1894 -
1622930592.9993498-CDS-H-paniculata_contig5595:3193..34571622930592.9993498-CDS-H-paniculata_contig5595:3193..3457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5595 3194..3457 -
1691481363.20544-CDS-H-paniculata_contig5595:3193..34571691481363.20544-CDS-H-paniculata_contig5595:3193..3457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5595 3194..3457 -
1622930593.0143805-CDS-H-paniculata_contig5595:6875..74151622930593.0143805-CDS-H-paniculata_contig5595:6875..7415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5595 6876..7415 -
1691481363.2158842-CDS-H-paniculata_contig5595:6875..74151691481363.2158842-CDS-H-paniculata_contig5595:6875..7415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5595 6876..7415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5595.13111.1

>prot_H-paniculata_contig5595.13111.1 ID=prot_H-paniculata_contig5595.13111.1|Name=mRNA_H-paniculata_contig5595.13111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp
MKDSEASGIMPLHREASREEQPNTPKEMPVNPRTPTAHAAAAPTNTTPTP
DPTTSTTAAAVEVPTQQSGCSDGSSSATPSPAAKTATATPSPARDVTAPA
TPAALVNISGEPVLTYPPLPPGEDLREDGTPNYFNWKELFPELKVLVEGL
ADISAECIQVSNWRAWPEKHYEEGGEQDWKVFPFVHTFPAYDESRRTWIE
STCAGCPTTTELLRRIPNIRTALFSRLGAGSRISGHRGWADLANHVLRCH
LSLKVPTDGPCGLWVNGEVVNHAEGEIIVFDDSKLHRAFNNSTGDRFVLI
VDILRPPGIALGTAEGGHTPELDSFIDAFR*
back to top

mRNA from alignment at H-paniculata_contig5595:767..7996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5595.13111.1 ID=mRNA_H-paniculata_contig5595.13111.1|Name=mRNA_H-paniculata_contig5595.13111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7230bp|location=Sequence derived from alignment at H-paniculata_contig5595:767..7996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCAAAATAACGTCATTTCCCATATATGTATGATAAAAAAGTCTGA
ACAATCAATTAGTAAAATAGCTCCGCTCCTTGTCAGCTGGGTTAGCTAAA
GACAGATCGACGGAACACGAGCCCATTGCTGTGCATAAACGCTCATACAA
TACTTCAGCGTCTGGTCAAGGAATGAGCGGAGGGGTGAGCTTTAATTTGG
TGTGCTGCACATATTGAAGAAGCTGTTGAGAGCAAAAATCTCCACCTTCA
GTCTGCTGCTCTTTTACAACAAATTCTACTCCTGACTGTACTGTTCTTAT
TCTGTACTATCTTTACGTACGAGTGACTGTTGGATGGGCATCTGAACTCC
TTGGGGTAAAACTGCGGACACCTTTTCTCTTTTCTCTCTTGTTCCAATCG
AACGGCCGTAACCTCTCCGGCGTAGTCCCATAGAGAGAATATCTCCTGAT
CTCTTCTCAGGCACCAACCCTTCCGCGTATCGAACCGCATCAGTCACTAC
CATCATCGGCGTATAGCCAAAAAGTACCGGACGACCGAGGAACGACATAC
ACATTGATTAGGTATATATTCTGGGCGATTCATGAAGGACAGCGAAGCAA
GCGGGATCATGCCTCTGCACCGCGAGGCGTCGCGAGAGGAACAGCCAAAC
ACACCAAAGGAAATGCCTGTAAACCCACGGACACCGACAGCACATGCAGC
AGCGGCACCGACCAATACGACACCCACTCCCGACCCCACAACATCAACAA
CAGCAGCGGCAGTAGAAGTTCCAACGCAACAATCGGGGTGTAGCGACGGC
TCTTCTTCAGCGACCCCATCACCAGCAGCAAAAACAGCGACAGCAACACC
ATCGCCGGCGCGAGATGTCACAGCACCGGCAACGCCCGCCGCCCTGGTGA
ACATCAGCGGAGAACCTGTGCTCACGTACCCGCCGCTGCCCCCGGGGGAG
GACCTGCGGGAAGACGGCACGCCGAACTACTTCAACTGGAAGGAGTTGTT
TCCAGAGCTCAAGGTGCTAGTTGAGGGACTCGCTGATATTTCCGCGGAGT
GTATCCAGGTATCGAACTGGAGGGCGTGGCCAGAGAAGCACTACGAAGAG
GGCGGAGAGCAGGACTGGAAGGTGCGAGTGGCAATGTGAGGCGGGGCGAG
TCTGTGTGTGTCTTAAAATGTAAATTTCTTGTTTAGTACACGAAATGTAG
ATTCTCGCCGTTGACCCGACGGACTAGAGAGAAAACTGTTCCTACATCCA
TTGTGCTCTCTCCACGCTCATCAGCCATGAGAAAGCAGTCACACCTGTCT
TCTAAACAGCCAAAATTGTGCAACTATGTAAGAAATTACAACGAGTTTCA
ACCGATAGAAGCACCTTTGCCCAGATAGGAAATTGTCCTTTCTGCCCCCT
GACGCTGGCAAAGCCGTGAATCCACAATTATTCATAGCCTGAACTGTCGG
CATATGTGTCTGCTACCCATCCAAGAAGGTAGAGGTGATATTCAACACCT
TGCTAATGATAGCAGATCGTTTTACATGCAGGAAGGAGTAAGACCAAATA
TGCGGTACAAATGGCAGATGATGTTATACGATATGGCGTACAACTAATAG
TTGGGTCTAGTGTGGAATGACAAACTGTCTGTAAATAATACGGTAGTGCT
CTCATGAACAAAGCCATGCAGCATTGCGGACATGGACGTCAGCAGGAGCA
GTGCGTCGAATACTGCTTGGTGCTAACCAAAGAATGTGAAGCTTATGTAC
CAGACGTCACACAAAAGCAGTGATCCTCACGATCAGCTGCTATAGCTGTG
CACACAAGCAGCAACAAAGCACAAGGCAGCACAGACCGACTCTGTACTAT
GCATGCACTCCTGTTCACTGTTTTCAAATAGTTTTCGGGCGGTTTCGATT
AAAATCTAGAAAACCCCCGGCCTGGGTCTTCACATGCATACTTGTCTCTC
GACCCCAGTTGAAGTGAATCCAACAATGCTAGCGTGTATATCTCTTCCTC
ATGTATCGACCTGTGCCTTCTTCAGGTCCAGCATTTCGCCTGAAGCAACT
ATGAACTGGCACGGGTTGCTCGGGTGAGCCGACACCAAATTGCCCCCCTA
GCTACAGCATGACAGATTTATTTCTCTGCTCTGGCACACCTACCACGACA
AAAATCACTTGTAAGATTTTCTGAGACATTTCTACGTTGCTCTTCGGCTC
ATATGGTACGCAGACCTCAGGCAGCGTTCAGGGGGCTTCACCAAAAACCT
CGCACCTGGCTGCTGCGATATCCGACTGCCCTCTCGATAATGATCTATAC
AAAATCTCCCATCCCCTACGACAAGAAAGCCTTCGATTTCCGCCACATTT
TTTTGGGGGGGGGGAAGTTCAGACTGAACTGCAACACAGGTGGTCAGGAT
AGGTGCGATATGGATTCCGGAGTTCCGCGGCGTCCAGTTTTTTTCATCCA
TACTGAAACTTAGGCCGTGTGTCGTCTGGTGGTCAACAGTTTAGATCCCA
AAGAAACGAAAAATGAAGAAGCTCTGTTGATTGTTTCGAAGGGTTCTGTG
ATTGGGTAACGAACGAAAAGAAAAGAGACCGTGGAAGAGGTTTTTCTTTC
AACCGCATTATTTCTAATCCCCCGCGTTTTTTCAGGTGTGTTTTTGTGCT
CTTGTGGACTTGAATCAAAACGCCATGTATGAAGTGAATAAGCACTGTGA
ATGGAAGGCGTATTGACCAACCAAGGTCAAGATGTAGCGAGCCAAAGGGG
CAGTGAATGCTTGTGTGGTGTGTGGTACTTCATATTACAAGCAGGGACAC
GCAGCAGGCAGTAGATAGAAAGGACACGACAAAGGAGGCACACACAAACA
GACACTACATAAGACAGTCGATAGACAGCACACTACAAAGCAGAGACAAA
ACGACAGGTAGTGGACAGTTTAGTCCTAGCACCGCACGAGTTGATGCCCA
TGGCCAGGCCCATGTCGTCTCGTGTTAACGCCGCCACGAGTATGACTGGC
TGTATCTGAGCACAGTGTCGTTTCAAATATTAATTACGCCGCATATTCGT
GTTGTGGGTGATTCGTTTTCATTTTTCTTGGTCCAGTAAGACTGATACAC
GATGCCATGATGTCATGAAACGAATTCATTTATAGTCTTGCTTTCCTCGA
TGAGACACGACCTTGGACCGTGTAGTGTATTGACAGGTGCAACAAAATAC
GAAAGATGGAACCGAAGACGAAAATATTTATTACTGCGATTTGATTGGTC
TGCACCTGTGGAAAGGAGCTGCCATTTTACTCCGAAAAAAACTTCTCGGT
AATGAGTAAAACCTCGGAAGGGAAAAGTAGAGTGAAAACGGAGAAAAAGG
GCGACGCAAAAGAGGATGAAAGCCAATCAGCGTCGCCTACCCCGCAGAGG
AATAAACAACTCTGTTCTGTTAAAGGAAAGGTAGACATGTTTGGGCGAAT
GCCTGGATGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGGGGG
TTAAAAAAAAAAAAAAAAGCCAATCAGCGTCTAATTTTTTTACAAGCATA
ATATGTGCTCATCGTTGTGATATGGGTGCATTGTGAAACGATTGCCTGAG
CTTGCACCTCATATAGCACAGTCACTCCCAGTAAATGCCCAGCAACTCTA
TGTATGCATAGCTAGCATGGCTTGCTTGATTCAGTGCCGTTGGCTCAATA
TTGATTGAGTTGCAATGATTACCGTGAAAAATTGGGCGCATTTTCCCTTT
AGAAAACGTGCAGGTGGCCACAATTTTTCGTTGCCCGTTCCTGTCACACA
CATGTCGTTCTTCATGAGTTCTTGACACGACACACTCAACCCGTACGTGG
TTGATGCAGAGCTATCGTTCGGGTTATCAAGTGTAGTCTTGCAGGCAATG
CAGCTCTTGCGGTGAACGTTTGAACCAGTTGAGATTGGATTTTGTCTGTT
TTGTTGGTCGTTCTCTCGGACCCTCTGGACACAAACAGCGGAAACGAAAG
CGCAAACGAAAACGAATGCATCCTCGATTTCGTTTTTAATCCTGTTAACA
CACGGCCTTACACAAGGACCCAAAGGAGGCGAACCGGTCTCTTGACTCCC
TGCTGCCTAGGCTCTCCGACATATCTCGCCCGCGCTCTCCAAGAACAAGC
CAGTTTTCAAAGAAATGCATGGATTTAAATTAGACACTGCGAACGTCATT
CATGTGGCTATGCGTGTATTTTTTCTGGCTGCAGATTGAGCAAGCTTGCC
ATCGTGCCAGGTGATGATTTGCGCATTAGGCTAGTGGTGATGTTGGGCTT
TTGAATCGCTTTAGTCTTTGACATTTCGCCCAAACTGGACCCATGAATGG
CTATTGTGGCCATATACAACCATCATGCACACTGTGTGTACTTATGTTGT
GTTATTAATCCAACAATCAATAATTCATTTGAGTCACTCCAGATCCCCCC
TCCCGACCCCTCCCCACTCCCCCCGCTCCAATGCCTCACAAACTGCATGA
ATCCCTTATTGTCTTGCTCCAACGTGGCCAATTTGTCAGGTGTTTCCTTT
CGTACACACTTTCCCGGCTTACGATGAGTCTCGGCGTACGTGGATTGAGA
GCACCTGTGCGGGCTGCCCCACTACGACGGAGTTGCTGCGCCGCATTCCC
AATATCCGTACGGCGCTCTTTTCTCGCCTCGGGGCGGGCTCGCGTATCTC
GGGTCACCGCGGGTGGGCCGACCTAGCGAACCACGTGTTACGGTGCCACC
TGTCTCTCAAGGTGCCCACGGATGGCCCTTGTGGGTTGTGGGTGAACGGA
GAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTG
TGTGTGTGTTCTGCTGGCTGATTGCTCAGTGCATGTTTCTGAGTGATGTT
GTCTGTTTTTCACGCGTTGTGCATGATTCGTAAAATTGACCTTCCTTGGC
ACAATAAAATGTCTGTTGGGACCTCCCACCCTACACTTTTCATTTATTTA
TTTATATCAGTATTTGCTTTGTAATCTGAGTTGTGCGCGCATGGGAGCGG
ATTTGGCGAATCATGAATAGGTGATGGCGACAAAAAAATTAACAATGTGT
TTTTTAAAATATACACCCCGTTCGAGAGTACTTTTGCAAAAAGCAATTCC
GTGCTCTCCTATGTTCCCTTTCACCTGCCCGTCGTTCATGCTACAGATCT
TTTAGTCATCTTGTAGCGTTTTCTTTTCTTTTTTTGAGCTTGACCCTCGA
ATCCTAGGAAAAGACATCGATAGAAGGAAAAAGTTTTTTTCAGGCAGGCC
GACACCGAAATATCAATCACTCCATCACTCGTGCTGACATGTTCCGACTG
CGATGACTGCTGTGGCGGGCTGGCAGCTGCTGTATTTGTGGGTACCGTTA
TGCACGACAGGACGCCGTACACGCAGCGGCTATCGCTCGCCAAGGAACTC
TTGGTAGATGTTGGTGCCTGCCAACTTATCCCCCTCTCTTCATTATGTCG
CTGGTACCCCAGTGTCACCAGGAAGATAGAGATGCACAGTGCTGTAGCAG
TGCGTCAACTGTTGCATGTATTCTACTTTACTGTCTGTTGTTTCCGTGGC
CGCGCGCAACTCTACTGGCTGTATCATGCTGCTTGCGCTGTCCAGCTGGC
TGCCACCGCTCGATGGCACTAGTGTCTGTACTGCAGTCTTTCAGCTGTAC
TTCCTCTACATCAGCTTTCAAGCGCACGGCGTTGCAGCTGCAACAAACCA
GCCGTGGACATGCAATGGTTGAAATGAAAATAGTCACATTGACCCCTTTC
GCTCTTAGAGTCCCTGGGTACTCTTCATTTGGTGGTGGGTCTCTCATTTC
ATGTCCCATGGATACATTCATCTGGTGATACGGTGTTGTCATGTCTACCC
CTGCCTAAACAGATTTCATCCGTCCCAATCGGTCCCCCCCCCCCCCCCCC
AGGTCTTGGGCACGAGACTGTCAAATTTCGCATGTCATAGAATGTCACAC
TACAGGCCCTCAGGAGTCAATGGGTTAACAAGTTCGTGTGCTCGTCCACG
CCCCGCTTCTCTTGCTGTCCGCATTCTTGCACGTGTGCGTACGCACACAT
AGGTGGTAAATCACGCGGAGGGAGAGATCATCGTTTTTGACGACAGCAAA
CTCCACAGGGCATTCAACAACTCCACAGGAGACAGGTTTGTCCTTATCGT
TGACATTTTGCGCCCCCCGGGCATTGCGCTGGGCACCGCCGAGGGGGGCC
ACACGCCGGAGCTGGACTCTTTCATCGACGCTTTCCGATGATGACCTGGC
ATGCCGTGCGTTGCGTTGATTCATGTTTTCCGTCGTGGGCCGTCCGTGTC
GCTCGTCCGCTTATAGAGACAGTGTGCGTCACACGATGTGTTTCGAAGTG
CAGCACTGATCCGTGCACCCGTACCATGTATACTAGAGTCTATCTTCCCT
TCTGTTTCTTTGCGTGTGTACGAAAGTGGTGCGCGCAGCAAAGTAACGAG
AGCGTCGTGGATATATAGAGCCCCATGCTCTGTCCAATGTAGGTACATGC
CGGATTTTAGTGGGAGTTTGGGTCGCAGTTGTTTGTACTCCATTCGGGAA
TAAACGCCGCATAACCCGCGGTCTGAAGACGATGTGCAGAGAACACAACA
ACATGTGTACGCATGTGCTCGGATGTTGCGTTATAACTTTTGTTTTGCGT
CTTGATGGTGTTATTGTCATGCAGTAGCGGCGATTTTTTTTCGCGTCCCG
AGTTTTTTCATCGGATCAGATTTGCTGTTGTGTTTGGAGTTGCGCGCCTG
TATCGATCTCGAAACCCTTGGAGCGTCGTTGGGTTGGGTTGGGTTGGGTT
GTATGATGCCAACGTGTGCGGTGGCTGTTAGTGGTGTGCGTACCCATCAC
TTCCACCATCGATGCTATGTGTGGGTGTGGATACACATTGCCTTCAATAG
ACTGTCTTATTTATGCTGTGTGGGCTAGTTTCCTTGTTAGAGAGAGAGAG
AGAGAGAGACGGAGAGATACAGAGGACCAGTAAGGTAACCAACAGCCGAT
CCTCCAAAGTGGGGATCGATAGTCTCATTGACGATGAAGCGTTTGAGATA
TAACTTTTTTTGACATGCCAAACACAAGAAACCGAGGGGCGGAAAATTAT
GCTTCGCTTCAATAGCCGTCGAAGGCACCAAATTTTGATTGAGTTGGACA
AATCAATCTTGAGATAAACGCAAAATCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5595:767..7996-

>mRNA_H-paniculata_contig5595.13111.1 ID=mRNA_H-paniculata_contig5595.13111.1|Name=mRNA_H-paniculata_contig5595.13111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig5595:767..7996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGACAGCGAAGCAAGCGGGATCATGCCTCTGCACCGCGAGGCGTC
GCGAGAGGAACAGCCAAACACACCAAAGGAAATGCCTGTAAACCCACGGA
CACCGACAGCACATGCAGCAGCGGCACCGACCAATACGACACCCACTCCC
GACCCCACAACATCAACAACAGCAGCGGCAGTAGAAGTTCCAACGCAACA
ATCGGGGTGTAGCGACGGCTCTTCTTCAGCGACCCCATCACCAGCAGCAA
AAACAGCGACAGCAACACCATCGCCGGCGCGAGATGTCACAGCACCGGCA
ACGCCCGCCGCCCTGGTGAACATCAGCGGAGAACCTGTGCTCACGTACCC
GCCGCTGCCCCCGGGGGAGGACCTGCGGGAAGACGGCACGCCGAACTACT
TCAACTGGAAGGAGTTGTTTCCAGAGCTCAAGGTGCTAGTTGAGGGACTC
GCTGATATTTCCGCGGAGTGTATCCAGGTATCGAACTGGAGGGCGTGGCC
AGAGAAGCACTACGAAGAGGGCGGAGAGCAGGACTGGAAGATGAAGGACA
GCGAAGCAAGCGGGATCATGCCTCTGCACCGCGAGGCGTCGCGAGAGGAA
CAGCCAAACACACCAAAGGAAATGCCTGTAAACCCACGGACACCGACAGC
ACATGCAGCAGCGGCACCGACCAATACGACACCCACTCCCGACCCCACAA
CATCAACAACAGCAGCGGCAGTAGAAGTTCCAACGCAACAATCGGGGTGT
AGCGACGGCTCTTCTTCAGCGACCCCATCACCAGCAGCAAAAACAGCGAC
AGCAACACCATCGCCGGCGCGAGATGTCACAGCACCGGCAACGCCCGCCG
CCCTGGTGAACATCAGCGGAGAACCTGTGCTCACGTACCCGCCGCTGCCC
CCGGGGGAGGACCTGCGGGAAGACGGCACGCCGAACTACTTCAACTGGAA
GGAGTTGTTTCCAGAGCTCAAGGTGCTAGTTGAGGGACTCGCTGATATTT
CCGCGGAGTGTATCCAGGTATCGAACTGGAGGGCGTGGCCAGAGAAGCAC
TACGAAGAGGGCGGAGAGCAGGACTGGAAGGTGTTTCCTTTCGTACACAC
TTTCCCGGCTTACGATGAGTCTCGGCGTACGTGGATTGAGAGCACCTGTG
CGGGCTGCCCCACTACGACGGAGTTGCTGCGCCGCATTCCCAATATCCGT
ACGGCGCTCTTTTCTCGCCTCGGGGCGGGCTCGCGTATCTCGGGTCACCG
CGGGTGGGCCGACCTAGCGAACCACGTGTTACGGTGCCACCTGTCTCTCA
AGGTGCCCACGGATGGCCCTTGTGGGTTGTGGGTGAACGGAGAGGTGTTT
CCTTTCGTACACACTTTCCCGGCTTACGATGAGTCTCGGCGTACGTGGAT
TGAGAGCACCTGTGCGGGCTGCCCCACTACGACGGAGTTGCTGCGCCGCA
TTCCCAATATCCGTACGGCGCTCTTTTCTCGCCTCGGGGCGGGCTCGCGT
ATCTCGGGTCACCGCGGGTGGGCCGACCTAGCGAACCACGTGTTACGGTG
CCACCTGTCTCTCAAGGTGCCCACGGATGGCCCTTGTGGGTTGTGGGTGA
ACGGAGAGGTGGTAAATCACGCGGAGGGAGAGATCATCGTTTTTGACGAC
AGCAAACTCCACAGGGCATTCAACAACTCCACAGGAGACAGGTTTGTCCT
TATCGTTGACATTTTGCGCCCCCCGGGCATTGCGCTGGGCACCGCCGAGG
GGGGCCACACGCCGGAGCTGGACTCTTTCATCGACGCTTTCCGATGAGTG
GTAAATCACGCGGAGGGAGAGATCATCGTTTTTGACGACAGCAAACTCCA
CAGGGCATTCAACAACTCCACAGGAGACAGGTTTGTCCTTATCGTTGACA
TTTTGCGCCCCCCGGGCATTGCGCTGGGCACCGCCGAGGGGGGCCACACG
CCGGAGCTGGACTCTTTCATCGACGCTTTCCGATGA
back to top