mRNA_H-paniculata_contig5594.13110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5594.13110.1
Unique NamemRNA_H-paniculata_contig5594.13110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5594.13110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5594contigH-paniculata_contig5594:3993..6539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004080.1
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930592.9093165-CDS-H-paniculata_contig5594:3992..41251622930592.9093165-CDS-H-paniculata_contig5594:3992..4125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5594 3993..4125 -
1691481363.168818-CDS-H-paniculata_contig5594:3992..41251691481363.168818-CDS-H-paniculata_contig5594:3992..4125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5594 3993..4125 -
1622930592.9216504-CDS-H-paniculata_contig5594:6402..65391622930592.9216504-CDS-H-paniculata_contig5594:6402..6539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5594 6403..6539 -
1691481363.1773937-CDS-H-paniculata_contig5594:6402..65391691481363.1773937-CDS-H-paniculata_contig5594:6402..6539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5594 6403..6539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5594.13110.1prot_H-paniculata_contig5594.13110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5594 3993..6539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5594.13110.1

>prot_H-paniculata_contig5594.13110.1 ID=prot_H-paniculata_contig5594.13110.1|Name=mRNA_H-paniculata_contig5594.13110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
NCRSVFLSSLGHTEASNMEHTAAVVARVADGEDHSMLSHFSLKKYTGIHP
TGNRRLLGVSMRSLGTSMKSGLGGRGEGRRSSGSSGSGGG
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mRNA from alignment at H-paniculata_contig5594:3993..6539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5594.13110.1 ID=mRNA_H-paniculata_contig5594.13110.1|Name=mRNA_H-paniculata_contig5594.13110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2547bp|location=Sequence derived from alignment at H-paniculata_contig5594:3993..6539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTGTCGGTCTGTTTTTCTCTCGTCTTTGGGACACACAGAAGCGTCCAA
CATGGAACACACGGCGGCAGTAGTGGCAAGGGTGGCGGATGGGGAAGACC
ACTCGATGCTCTCTCATTTCTCACTAAAAAAATACACGTGAGTTATTTTC
TAGGGAATACTTGCCTTAACCCTTTTGGAAATTCTTACCCTCCCAATCAG
TAGCTCTGGAATGATTGTTTATGCTTTGGCCGTGACAAAAAAAAAACGGT
GCTTGCTTGTTCTTACTCTGCTCAAAACGCAATATAAAAGCCCTCGAACG
GCCAAAAAACGCCCCCCTTTTGCGCCTGAGATACACTGACCAGCTGTCTA
GAGCTGGTTAAGCATTATCTCGACGTCATTCTTCACGGCTGGTCGTTAGG
GGATCGATATTTTGGCCGTTCCGAAGTCTGGCTCCTTAAGAGTTCAACAC
CAGGGATGAGAAGTTGGGAAGGGAGCGGCCGTCGACGGGGGGGGGAGAAT
TAAGCAAAACTAGAAACAAACAATACGATGCTGTAAATGTTTTTCGCGGA
TTATCTGGTACCATCAGGGTACTGCGAAGTAAAGGCCGTAGGTGAACATG
TTGAGACGCGTTCAGCTGTTTCAGGTAAGAAGGAGCACCTGCGCGCACAA
ACCACAACAAATCAGCCCGAAGTTGATGACTTGGTGTTTCTTCGAGTGTC
TGAACGTGGAAGTAACGCACGAAATAGAACGACCAAACGGGGAGTAAGAT
AGCAATGCTCCGGGTCTTTCCGTTATCACACGCAGGTGGTCAGGGGAATA
CCTTACGGTACTTTGGGGGCAAAACATTACAACGTCCCATATTGTGGTCA
GGCTGTCAACGGTTACACAAGAACTTCGAGGTTTCTAACAAGTCGAACGA
GGTCCGTACAACGTGCCAAGGTATCCGCAAACGCGTTCGTTGCAGCATAA
AAAACGAACCCAAAATTAGCAAAAGGGGCACAATGTACCCATCCCAATGG
CCAGATTTTTACCGATAGACCGCGCGTCCGGACATAAGCTCTGGTGTAAC
CTCGTGCACAGACAGTCTGGTTCCCGTCGTAGCGCTGTTCAGACCACCGA
CTGCCCGAATTATCCTTGGCGATTGCACTTGAGCATGACTTGGGCTTGGG
ATTGTCATCTGTGTGAACCAGTTTATTTTGTTCGTGTGCATACTTCAACA
GAAGTACCACAGATTGACGACTGGCTCGTGCAGCGTTTTCAAGTTACCTC
CAAAATATTGCTTTGTGGTTAACGTGAACGGGTATGTATATACCTGGAGC
TCTTTCTCGCAAGAGGTTTCGAGGGGGGGAGAGGGGAGGGGGGGGAAATT
CTCAGCGATTAGATTGGTTGTTCAATAAATAGTACATCACTTTTTTCTAG
AAGGATGTAATAACAGGTATATATTTCGGTATGTCGGACTCCGATGCTAT
GCCACCTATTCTTGGGTGAAACCGCATGGTTGGCGGGCAAGCGTTCATTG
TTCACGCGCCAGATCGTAGTTTGTTGCTTGATGAGGTCTTCGATTTGTAC
GACTGACGACATGTCCGCTACCATTCCATATGTCACAAGTTTTTTAAATA
TCGAAGAAATGAAAAAGGCCCCGATACAAACCACTCCGTTCAAAAAAGGA
TGGTGCATTTCGGACCTTATATGCTCTCCAATATCCTAGCAACCGTTGGC
TTTGATGTAACGCTTTCTGTGAGGGGATTGTCTTCGTGCAGAAAAAGTAA
CATTCTAAGCCTGGAGCTAGACCGAGAGTACTGAACTAATTGCCACTTCG
ACCTCAAGTTCCCACGCTCCGTATCTTGAAATAACGGTGCAGTGGACACT
ATCATGTACGTACGTGGTAAATTTATTTGAACGCTGTGCGAACACGATTT
CGCGTGAGAACAAATTGCGAACACGGGGTCTCGCGGACGGATAGTCGATC
AAGACACAATGTCCAAGCGCGGGCTAGATTGTGCTTTTCTTCAAACGGAA
CTTATTCATTATCTGTGCTGACTATCAGCCTTCCGCAAAACGTCCTTCTT
GTCTCTCCTCGGACTCAGAGACCAACGGCTCCCAGATCTCAGGATACTCG
AACAGAAACCCAATGTACCTGTGGGATCTCGATCTAGAGAACAACGGGAA
GGGATCCCTGTTACTGTGGGAAAACGGTCACTCCACAAAAACATCTATGT
GTTATCATTCTTCAGCTTCCGTGCCGTTTTAAGACTGTTTTCAAACCAAT
ACATACTACCAATGGTTACAAACGAAAGCCACTAGCTTAGTCCGATTAGT
ATTGTTGTTGCCCGGTCTTTCTTCCTCACATGCGTCCCATTTTCTCGCTC
GCTGTCAACGGCGGCGCCGCAACGTCAAAGTCAATTACCCCCAAACTATA
TTTTCTTATCGCAGCGGAATTCACCCGACTGGGAACAGACGTCTCTTAGG
CGTGTCCATGCGAAGCTTGGGCACAAGCATGAAAAGTGGTCTCGGAGGAA
GAGGAGAAGGGAGGCGCAGCAGCGGTAGCAGCGGGAGTGGTGGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5594:3993..6539-

>mRNA_H-paniculata_contig5594.13110.1 ID=mRNA_H-paniculata_contig5594.13110.1|Name=mRNA_H-paniculata_contig5594.13110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig5594:3993..6539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTGTCGGTCTGTTTTTCTCTCGTCTTTGGGACACACAGAAGCGTCCAA
CATGGAACACACGGCGGCAGTAGTGGCAAGGGTGGCGGATGGGGAAGACC
ACTCGATGCTCTCTCATTTCTCACTAAAAAAATACACAACTGTCGGTCTG
TTTTTCTCTCGTCTTTGGGACACACAGAAGCGTCCAACATGGAACACACG
GCGGCAGTAGTGGCAAGGGTGGCGGATGGGGAAGACCACTCGATGCTCTC
TCATTTCTCACTAAAAAAATACACCGGAATTCACCCGACTGGGAACAGAC
GTCTCTTAGGCGTGTCCATGCGAAGCTTGGGCACAAGCATGAAAAGTGGT
CTCGGAGGAAGAGGAGAAGGGAGGCGCAGCAGCGGTAGCAGCGGGAGTGG
TGGCGGCCGGAATTCACCCGACTGGGAACAGACGTCTCTTAGGCGTGTCC
ATGCGAAGCTTGGGCACAAGCATGAAAAGTGGTCTCGGAGGAAGAGGAGA
AGGGAGGCGCAGCAGCGGTAGCAGCGGGAGTGGTGGCGGC
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