prot_H-paniculata_contig5593.13109.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5593.13109.1
Unique Nameprot_H-paniculata_contig5593.13109.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length104
Homology
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: D7FJG1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG1_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.310e-35
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 MPITIGKFDEEACAALT-QGTDS-----------EDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSEALTGSSGVAFLTAVEGNPMPFLDR 99
            +P+T+    EE CA    Q  D+           +D + +CRICLSDY+ GD VR+LPCFHRFH SEIDDWL+RN  CPLC+LD+S+ALTGSSGVAF++ +EGNP P ++R
Sbjct:   87 LPVTV--VTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKALTGSSGVAFVSVIEGNPRPVIER 195          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: A0A4D9D6F5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.970e-15
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   21 DSEDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLC 69
            DS D + SCRICL DY  GD +RVLPCFHRFHA    DWL R  TCPLC
Sbjct:  122 DSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRKKTCPLC 170          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: W7U3U3_9STRA (Ring u-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3U3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.400e-14
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   21 DSEDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLC 69
            DS D + SCRICL DY  GD +RVLPCFHRFHA    DWL R  TCPLC
Sbjct:  274 DSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLC 322          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.230e-12
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   23 EDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSEA 76
            E+   SCR+CLSDY+ GD++R+LPC H+FH   ID+WL R+  CPLC   V  A
Sbjct:  920 EEDKVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEVA 973          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: UPI000BA80192 (uncharacterized protein LOC111086613 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA80192)

HSP 1 Score: 71.2 bits (173), Expect = 3.050e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   13 CAALTQGTDSE-DCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDV 73
            C+++++  DS  +  K CR+CLS Y+ G+ +R+LPCFH +HAS ID WL  N +CP C ++V
Sbjct:  593 CSSISRLRDSSLNHEKECRVCLSSYETGEVLRILPCFHEYHASCIDKWLKSNRSCPTCRVEV 654          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: A0A3Q3JQ58_MONAL (Uncharacterized LOC109969146 n=2 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JQ58_MONAL)

HSP 1 Score: 70.9 bits (172), Expect = 3.800e-12
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   26 NKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSE 75
            N  C+IC SDYK GD +R+LPCFH +H   ID WL  NTTCP+C  ++++
Sbjct:  359 NTQCQICFSDYKEGDKLRMLPCFHDYHVQCIDRWLKDNTTCPICRANLAD 408          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: UPI0003C8DAA4 (E3 ubiquitin-protein ligase RLIM-like n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8DAA4)

HSP 1 Score: 70.9 bits (172), Expect = 4.130e-12
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    5 IGKFDEEACAALTQGTDSEDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSEA 76
            IG   ++  +   +  D+ D  KSC IC+++Y+ G  +R+LPC H +HA  ID WL  NTTCP+C   V E+
Sbjct:  521 IGLTRQQIDSLAVRNFDNTDALKSCSICITEYREGSKLRILPCSHEYHAHCIDRWLSENTTCPICRRRVLES 592          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: UPI001B354276 (E3 ubiquitin-protein ligase RLIM-like n=1 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B354276)

HSP 1 Score: 70.9 bits (172), Expect = 4.150e-12
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0
Query:   16 LTQGTDSEDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSEA 76
            LT     E+ +KSC IC++ +  GD++RVLPC H +HA  ID WL  N TCP+C  DV+++
Sbjct:  553 LTMRISGENESKSCTICITQFTEGDTIRVLPCCHEYHADCIDRWLADNVTCPICRYDVTDS 613          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: G1SUD5_RABIT (RING-type domain-containing protein n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1SUD5_RABIT)

HSP 1 Score: 70.9 bits (172), Expect = 4.160e-12
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   23 EDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSEA 76
            +D +KSC IC++ +  G+++RVLPCFH +HA  ID WL  NTTCP+C  +V ++
Sbjct:  585 DDTSKSCIICITKFTKGNTIRVLPCFHEYHAHCIDRWLSENTTCPICRQEVRDS 638          
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Match: UPI00048F881D (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RLIM n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI00048F881D)

HSP 1 Score: 70.9 bits (172), Expect = 4.290e-12
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   23 EDCNKSCRICLSDYKVGDSVRVLPCFHRFHASEIDDWLDRNTTCPLCYLDVSEA 76
            +D +KSC IC++ +  G+++RVLPCFH +HA  ID WL  NTTCP+C  +V ++
Sbjct:  957 DDTSKSCIICITKFTKGNTIRVLPCFHEYHAHCIDRWLSENTTCPICRQEVRDS 1010          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5593.13109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG1_ECTSI2.310e-3554.95RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9D6F5_9STRA4.970e-1567.35RING-type domain-containing protein n=1 Tax=Nannoc... [more]
W7U3U3_9STRA3.400e-1467.35Ring u-box domain-containing protein n=1 Tax=Nanno... [more]
A0A6H5KTI9_9PHAE1.230e-1253.70RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI000BA801923.050e-1246.77uncharacterized protein LOC111086613 n=1 Tax=Limul... [more]
A0A3Q3JQ58_MONAL3.800e-1254.00Uncharacterized LOC109969146 n=2 Tax=Monopterus al... [more]
UPI0003C8DAA44.130e-1241.67E3 ubiquitin-protein ligase RLIM-like n=1 Tax=Tupa... [more]
UPI001B3542764.150e-1247.54E3 ubiquitin-protein ligase RLIM-like n=1 Tax=Ocho... [more]
G1SUD5_RABIT4.160e-1250.00RING-type domain-containing protein n=2 Tax=Orycto... [more]
UPI00048F881D4.290e-1250.00LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase R... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 29..69
e-value: 3.1E-4
score: 30.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 28..69
e-value: 2.6E-12
score: 46.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 29..69
score: 10.129
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 7..79
e-value: 1.0E-17
score: 65.1
NoneNo IPR availablePANTHERPTHR46359FAMILY NOT NAMEDcoord: 22..77
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 23..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5593contigH-paniculata_contig5593:8509..10323 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5593.13109.1mRNA_H-paniculata_contig5593.13109.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5593 6991..11603 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5593.13109.1 ID=prot_H-paniculata_contig5593.13109.1|Name=mRNA_H-paniculata_contig5593.13109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MPITIGKFDEEACAALTQGTDSEDCNKSCRICLSDYKVGDSVRVLPCFHR
FHASEIDDWLDRNTTCPLCYLDVSEALTGSSGVAFLTAVEGNPMPFLDRG
MSR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD