prot_H-paniculata_contig55893.13103.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig55893.13103.1
Unique Nameprot_H-paniculata_contig55893.13103.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length175
Homology
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.000e-7
Identity = 40/142 (28.17%), Postives = 65/142 (45.77%), Query Frame = 0
Query:   15 CRRCGKRGHDLNACPQLADEDACLAKAETDIELEEALKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFMKLTQVAFISLLNHHLISLGKFADFGH 156
            C +CG+ GH   ACP   + D  LA  ET              +D+           +IWI DNG+++H+ +D+ +L + +ECD      +G  L I   G + L+         ++L+ V F   + H+LIS G+    G+
Sbjct:  258 CHKCGEVGHLRAACPARNNPDIVLAVNET--------------LDASD---------DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGY 376          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 55.5 bits (132), Expect = 9.330e-6
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   49 EALKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            EAL + ++S+   G+ +         + D+GA+ HM  +S  L N +   GHV +A+G+++PIEG+G L L F  DS+  FM
Sbjct:  317 EALIKSIVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 397          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 54.7 bits (130), Expect = 1.690e-5
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   49 EALKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            EAL + ++S+   G+ +         + D+GA+ HM  +S  L N +   GHV +A+G+++PIEG+G L L F  DS+  FM
Sbjct:  304 EALIKSIVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 384          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBEE580 (uncharacterized protein LOC106448715 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEE580)

HSP 1 Score: 53.5 bits (127), Expect = 4.080e-5
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0
Query:   70 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI+GVG L L F  DS+ ++M
Sbjct:  414 GIKPLIVDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIKGVGDLKL-FNKDSKALYM 473          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 53.1 bits (126), Expect = 5.030e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   70 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 473          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 53.1 bits (126), Expect = 5.310e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   70 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 454          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 53.1 bits (126), Expect = 5.520e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   70 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 469          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   70 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 468          
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI0006AAA996 (uncharacterized protein LOC106379087 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAA996)

HSP 1 Score: 52.8 bits (125), Expect = 7.270e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   70 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 130
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  396 GIKPMIIDSGASHHMISDDSLIKNIELAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 455          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A225WMA1_9STRA3.000e-728.17CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A178U605_ARATH9.330e-636.59ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
Q9FWZ5_ARATH1.690e-536.59Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
UPI000BBEE5804.080e-542.62uncharacterized protein LOC106448715 n=1 Tax=Brass... [more]
UPI0006AB2FB35.030e-542.62uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
UPI000BBEF31C5.310e-542.62uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B5.520e-542.62uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC905.560e-542.62uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI0006AAA9967.270e-542.62uncharacterized protein LOC106379087 n=1 Tax=Brass... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 1..31
e-value: 9.7E-6
score: 27.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 15..30
score: 8.944
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 4..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55893contigH-paniculata_contig55893:470..1057 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55893.13103.1mRNA_H-paniculata_contig55893.13103.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig55893 470..1057 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig55893.13103.1 ID=prot_H-paniculata_contig55893.13103.1|Name=mRNA_H-paniculata_contig55893.13103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
RSKDHLQRDCPNVYCRRCGKRGHDLNACPQLADEDACLAKAETDIELEEA
LKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGH
VCLADGNRLPIEGVGILFLQFRFDSEVVFMKLTQVAFISLLNHHLISLGK
FADFGHEYRCSREGLRINLKPGRLL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf