mRNA_H-paniculata_contig55893.13103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55893.13103.1
Unique NamemRNA_H-paniculata_contig55893.13103.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.000e-7
Identity = 40/142 (28.17%), Postives = 65/142 (45.77%), Query Frame = 1 
Query:   43 CRRCGKRGHDLNACPQLADEDACLAKAETDIELEEALKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFMKLTQVAFISLLNHHLISLGKFADFGH 468
            C +CG+ GH   ACP   + D  LA  ET              +D+           +IWI DNG+++H+ +D+ +L + +ECD      +G  L I   G + L+         ++L+ V F   + H+LIS G+    G+
Sbjct:  258 CHKCGEVGHLRAACPARNNPDIVLAVNET--------------LDASD---------DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGY 376
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 55.5 bits (132), Expect = 9.330e-6
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  145 EALKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            EAL + ++S+   G+ +         + D+GA+ HM  +S  L N +   GHV +A+G+++PIEG+G L L F  DS+  FM
Sbjct:  317 EALIKSIVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 397
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 54.7 bits (130), Expect = 1.690e-5
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  145 EALKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            EAL + ++S+   G+ +         + D+GA+ HM  +S  L N +   GHV +A+G+++PIEG+G L L F  DS+  FM
Sbjct:  304 EALIKSIVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAFFM 384
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBEE580 (uncharacterized protein LOC106448715 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEE580)

HSP 1 Score: 53.5 bits (127), Expect = 4.080e-5
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  208 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI+GVG L L F  DS+ ++M
Sbjct:  414 GIKPLIVDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIKGVGDLKL-FNKDSKALYM 473
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 53.1 bits (126), Expect = 5.030e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 473
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 53.1 bits (126), Expect = 5.310e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 454
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 53.1 bits (126), Expect = 5.520e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 469
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BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 468
[Close]
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Match: UPI0006AAA996 (uncharacterized protein LOC106379087 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAA996)

HSP 1 Score: 52.8 bits (125), Expect = 7.270e-5
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  208 GMEIWICDNGATKHMTHDSGFLFNYQECDGHVCLADGNRLPIEGVGILFLQFRFDSEVVFM 390
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ ++M
Sbjct:  396 GIKPMIIDSGASHHMISDDSLIKNIELAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM 455
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55893.13103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A225WMA1_9STRA3.000e-728.17CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A178U605_ARATH9.330e-636.59ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
Q9FWZ5_ARATH1.690e-536.59Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
UPI000BBEE5804.080e-542.62uncharacterized protein LOC106448715 n=1 Tax=Brass... [more]
UPI0006AB2FB35.030e-542.62uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
UPI000BBEF31C5.310e-542.62uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B5.520e-542.62uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC905.560e-542.62uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI0006AAA9967.270e-542.62uncharacterized protein LOC106379087 n=1 Tax=Brass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55893contigH-paniculata_contig55893:470..1057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.2
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog15368.BRADI3G29820.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930591.3400605-CDS-H-paniculata_contig55893:469..8381622930591.3400605-CDS-H-paniculata_contig55893:469..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55893 470..838 -
1691481362.3380992-CDS-H-paniculata_contig55893:469..8381691481362.3380992-CDS-H-paniculata_contig55893:469..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55893 470..838 -
1622930591.3589451-CDS-H-paniculata_contig55893:901..10571622930591.3589451-CDS-H-paniculata_contig55893:901..1057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55893 902..1057 -
1691481362.3545973-CDS-H-paniculata_contig55893:901..10571691481362.3545973-CDS-H-paniculata_contig55893:901..1057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55893 902..1057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55893.13103.1prot_H-paniculata_contig55893.13103.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55893 470..1057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55893.13103.1

>prot_H-paniculata_contig55893.13103.1 ID=prot_H-paniculata_contig55893.13103.1|Name=mRNA_H-paniculata_contig55893.13103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
RSKDHLQRDCPNVYCRRCGKRGHDLNACPQLADEDACLAKAETDIELEEA
LKEEVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSGFLFNYQECDGH
VCLADGNRLPIEGVGILFLQFRFDSEVVFMKLTQVAFISLLNHHLISLGK
FADFGHEYRCSREGLRINLKPGRLL
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mRNA from alignment at H-paniculata_contig55893:470..1057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55893.13103.1 ID=mRNA_H-paniculata_contig55893.13103.1|Name=mRNA_H-paniculata_contig55893.13103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig55893:470..1057- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGAACGCGTGCCCCCAGCTCGCCGATG
AAGATGCTTGTTTGGCTAAAGCTGAAACTGACATTGAACTTGAAGAGGCG
CTCAAAGTTGATCTGGGCCAAGACGAGTTCATCGCGGCATACATCGCGTC
GACTTCCACCACAGGCAAGGAAGAGGTTTTATCTGTGGACTCTGAGGGGT
TAGAATATCGTGAGGTGGGGGGGATGGAAATTTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGGTTTTCTTTTTAATTACCAGGA
ATGTGATGGGCATGTATGCCTTGCAGACGGTAATCGTCTCCCGATCGAAG
GAGTTGGCATTCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTC
ATGAAGTTAACTCAGGTTGCGTTCATATCACTTCTCAATCATCACCTTAT
ATCTCTTGGGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGTG
AAGGGCTCAGAATTAACCTTAAACCTGGGAGACTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig55893:470..1057-

>mRNA_H-paniculata_contig55893.13103.1 ID=mRNA_H-paniculata_contig55893.13103.1|Name=mRNA_H-paniculata_contig55893.13103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig55893:470..1057- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGAACGCGTGCCCCCAGCTCGCCGATG
AAGATGCTTGTTTGGCTAAAGCTGAAACTGACATTGAACTTGAAGAGGCG
CTCAAACGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTG
TCGGCGATGTGGTAAGCGTGGTCACGACTTGAACGCGTGCCCCCAGCTCG
CCGATGAAGATGCTTGTTTGGCTAAAGCTGAAACTGACATTGAACTTGAA
GAGGCGCTCAAAGAAGAGGTTTTATCTGTGGACTCTGAGGGGTTAGAATA
TCGTGAGGTGGGGGGGATGGAAATTTGGATTTGTGATAATGGTGCAACGA
AACACATGACCCATGATTCAGGTTTTCTTTTTAATTACCAGGAATGTGAT
GGGCATGTATGCCTTGCAGACGGTAATCGTCTCCCGATCGAAGGAGTTGG
CATTCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTCATGAAGT
TAACTCAGGTTGCGTTCATATCACTTCTCAATCATCACCTTATATCTCTT
GGGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGTGAAGGGCT
CAGAATTAACCTTAAACCTGGGAGACTTCTGGAAGAGGTTTTATCTGTGG
ACTCTGAGGGGTTAGAATATCGTGAGGTGGGGGGGATGGAAATTTGGATT
TGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGGTTTTCTTTT
TAATTACCAGGAATGTGATGGGCATGTATGCCTTGCAGACGGTAATCGTC
TCCCGATCGAAGGAGTTGGCATTCTGTTCCTTCAATTTCGATTTGACTCC
GAGGTTGTTTTCATGAAGTTAACTCAGGTTGCGTTCATATCACTTCTCAA
TCATCACCTTATATCTCTTGGGAAATTCGCGGACTTTGGTCATGAATATA
GGTGTTCGCGTGAAGGGCTCAGAATTAACCTTAAACCTGGGAGACTTCTG
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