mRNA_H-paniculata_contig55870.13101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55870.13101.1
Unique NamemRNA_H-paniculata_contig55870.13101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.510e-42
Identity = 113/330 (34.24%), Postives = 177/330 (53.64%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CC---H*TFWRGNRV*PSCVSAGRSWS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQ-SYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVVS 957
            + K KARLVA+GF Q+H VD+LE F+PT  A+S+++V+A+  + +  L  LD++  F+Q+ L+ EVFMKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD        + + +           R + +  S  +  RS   +   G V     + CL +       ET  +          P+ S  KA +    +L  +E   L +  ++ + +++   VYVDAD+A ++  RR VSG  V++ G +VS
Sbjct:  543 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYL--KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVS 870          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 5.980e-42
Identity = 113/330 (34.24%), Postives = 177/330 (53.64%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CC---H*TFWRGNRV*PSCVSAGRSWS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQ-SYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVVS 957
            + K KARLVA+GF Q+H VD+LE F+PT  A+S+++V+A+  + +  L  LD++  F+Q+ L+ EVFMKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD        + + +           R + +  S  +  RS   +   G V     + CL +       ET  +          P+ S  KA +    +L  +E   L +  ++ + +++   VYVDAD+A ++  RR VSG  V++ G +VS
Sbjct:  479 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYL--KETAYLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVS 806          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.280e-41
Identity = 111/329 (33.74%), Postives = 172/329 (52.28%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAVENDWRLWQL--DMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CCH*TFWRGNRV*PSCVSAGRS------WS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQSYGKALESGKDHLVPQENERLGVSVRKGSWLNLSVYVDADYADRSNWRRLVSGVAVMLGGSVV 954
            + K KARLVA+GF Q++ VD+LE F+PT  A+S ++V+A+   + L  L  D++  F+Q+ L++EVFMKLP GC    G+VVRL+K++YGLKQ  R + KRLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G +   + ++AAL     T   GE++++ GCAF RD        + + +        R N    S + A  +         EG   V  +    S +        D +   +     S    +S+ KA +   ++L+   +  L     K    +  VYVDAD+A ++N RR VSG  V++    V
Sbjct:   43 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESY--IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDKSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPV 369          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.430e-41
Identity = 112/330 (33.94%), Postives = 175/330 (53.03%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CC---H*TFWRGNRV*PSCVSAGRSWS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQ-SYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVVS 957
            + K KARLVA+GF Q+H VD+LE F+PT  A+S+++V+A+  + +  L  LD++  F Q+ L+ EV MKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD        + + +           R + +  S  +  RS   +   G V     + CL +       ET  +          P+ S  KA +    +L  +E   L +  ++ + +++   VYVDAD+A ++  RR VSG  V++ G +VS
Sbjct:  274 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYL--KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVS 601          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.190e-39
Identity = 112/331 (33.84%), Postives = 175/331 (52.87%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAVENDWRLWQL--DMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CCH*TFWRGNRV*PSCVSAGRS------WS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQSYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVV 954
            + K KARLVA+GF Q++ VD+LE F+PT  A+S ++V+A+   + L  L  D++  F+Q+ L++EVFMKLP GC    G+VVRL+K++YGLKQ  R + KRLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     + ++AAL     T   GE++++ GCAF RD        + + +        R N    S + A  +         EG   V  +    S +        D +   +     S    +S+ KA +   ++L+  E   L +  +  + ++ S  VYVDAD+A ++N RR VSG  V++    V
Sbjct:  509 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESY--IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLL--ETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPV 835          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.420e-39
Identity = 112/331 (33.84%), Postives = 175/331 (52.87%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAVENDWRLWQL--DMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CCH*TFWRGNRV*PSCVSAGRS------WS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQSYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVV 954
            + K KARLVA+GF Q++ VD+LE F+PT  A+S ++V+A+   + L  L  D++  F+Q+ L++EVFMKLP GC    G+VVRL+K++YGLKQ  R + KRLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     + ++AAL     T   GE++++ GCAF RD        + + +        R N    S + A  +         EG   V  +    S +        D +   +     S    +S+ KA +   ++L+  E   L +  +  + ++ S  VYVDAD+A ++N RR VSG  V++    V
Sbjct:  776 IVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESY--IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLL--ETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPV 1102          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.300e-39
Identity = 109/331 (32.93%), Postives = 175/331 (52.87%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CCH*TFWRGNRV*PSCVSAG-----RSWS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQ-SYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVV 954
            + K KARLVA+GF Q+H +D+L  F+PT  A+S+++++A+  + +  L  LD++  F+Q  L+  VFMKLP GC    G+VVRL+K++YGLKQ  R +  RLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     ++++AAL     T   GE+K++ GCAF RD        + + +        R N V  S + A      RS       G V     + C  +   +   +              P+ S+ KA +   ++L+   +  L ++ ++ S +++   VYVDAD+A ++  RR VSG  V + G +V
Sbjct:  228 IVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESY--IRSVLERFNVVRTSSIPASPTVVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAH--LSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLV 554          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.960e-37
Identity = 78/179 (43.58%), Postives = 118/179 (65.92%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 522
            +TK KARLVA+GF Q+H +D+L  F+PT  A+S+++++A+  + +  L  LD++  F+Q+ L+ EVFMKLP GC    G+VVRL+K++YGLKQ  R +  RLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     ++++AAL     T   GE+K++ GCA  RD
Sbjct:  236 ITKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLLALACQYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSFAETVVAALGDSLPTKNLGEVKFFLGCALRRD 414          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 5.490e-37
Identity = 80/179 (44.69%), Postives = 117/179 (65.36%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 522
            + K KARLVA+GF Q+H VD+LE F+PT  A+S+++V+A+  + +  L  LD++  F+Q+ L+ EVFMKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD
Sbjct:  687 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRD 865          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 8.420e-37
Identity = 105/332 (31.63%), Postives = 171/332 (51.51%), Query Frame = 1
Query:    4 VTKPKARLVARGFSQQHNVDFLEMFAPTVAASSVKMVIAV--ENDWRLWQLDMK*VFIQANLEFEVFMKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMVRSCPHHATDIH*CCH*TFWRGNRV*PSCVSAGRS------WS*EGRRGVV*QAYALSCLEFDTVKWYDET*YSQCGTGSSEGSPQSYGKALESGKDHLVPQENERLGVSVRKGSWLNLS--VYVDADYADRSNWRRLVSGVAVMLGGSVVS 957
            + K KARLVA+GF Q+H VD+LE F+PT  A+S+++++A+  + D      D++  F+Q+ L+ EVFMKLP GC    G+VVRL K++YGL+Q  R + KRLV   ++IG  QS SDPCV        V  ++ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD        + + +        R N    S + A  +         EG   V  +    S +        D +   +     S    +S+ KA +   ++L+  E   L +  ++ + +++   VYVDAD+A  +  RR  SG  V++   +V+
Sbjct:  210 IVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESY--IRSVLERFNVCRTSSIPASLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLL--ETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVA 537          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J594_9PHAE3.510e-4234.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LDZ0_9PHAE5.980e-4234.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQD0_9PHAE1.280e-4133.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE2.430e-4133.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE2.190e-3933.84Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE2.420e-3933.84Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE4.300e-3932.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDR1_9PHAE3.960e-3743.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHE8_9PHAE5.490e-3744.69CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KN43_9PHAE8.420e-3731.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55870contigH-paniculata_contig55870:86..1042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score75.9
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons1
Model size957
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55870.13101.1prot_H-paniculata_contig55870.13101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55870 479..844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930591.032397-UTR-H-paniculata_contig55870:85..4781622930591.032397-UTR-H-paniculata_contig55870:85..478Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55870 86..478 -
1691481362.1834526-UTR-H-paniculata_contig55870:85..4781691481362.1834526-UTR-H-paniculata_contig55870:85..478Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55870 86..478 -
1622930591.061248-UTR-H-paniculata_contig55870:844..10421622930591.061248-UTR-H-paniculata_contig55870:844..1042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55870 845..1042 -
1691481362.2156796-UTR-H-paniculata_contig55870:844..10421691481362.2156796-UTR-H-paniculata_contig55870:844..1042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55870 845..1042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930591.0478969-CDS-H-paniculata_contig55870:478..8441622930591.0478969-CDS-H-paniculata_contig55870:478..844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55870 479..844 -
1691481362.1995788-CDS-H-paniculata_contig55870:478..8441691481362.1995788-CDS-H-paniculata_contig55870:478..844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55870 479..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55870.13101.1

>prot_H-paniculata_contig55870.13101.1 ID=prot_H-paniculata_contig55870.13101.1|Name=mRNA_H-paniculata_contig55870.13101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVEKIGMAQSKSDPCV
FRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMRGELKWY
PGCAFWRDMVRSCPHHATDIH*
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mRNA from alignment at H-paniculata_contig55870:86..1042-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55870.13101.1 ID=mRNA_H-paniculata_contig55870.13101.1|Name=mRNA_H-paniculata_contig55870.13101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=957bp|location=Sequence derived from alignment at H-paniculata_contig55870:86..1042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTGACAAAGCCAAAGGCAAGGCTCGTAGCTCGAGGGTTTAGCCAGCA ACATAACGTTGATTTTCTCGAGATGTTTGCTCCTACGGTAGCCGCCTCCA GTGTCAAGATGGTGATTGCTGTTGAAAATGACTGGAGACTGTGGCAATTA GATATGAAATAGGTCTTCATTCAGGCGAATTTAGAATTCGAGGTGTTCAT GAAGCTTCCAGAGGGTTGTAGAGACAAATGGGGTAGAGTAGTAAGGCTGA GTAAGGCCATATATGGTCTAAAGCAGGGTGGACGGATGTGGTCAAAGCGC CTCGTAGAAAAAATCGGTATGGCGCAATCCAAGTCTGACCCTTGCGTGTT CAGGGTCGAGAAGCGTGGAGTGGTAGATATGATTATGTGTGTTCATGTAG ATGATATGATTGTTTCTGGTAAGAGTGTGGAGTGTGATTCCCTGCTTGCA GCGTTAAAGGCGGAGTTCCAAACCATGCGAGGCGAGCTCAAGTGGTACCC GGGTTGCGCATTTTGGCGTGACATGGTGAGGAGTTGTCCGCATCACGCAA CGGACATTCATTGATGCTGTCATTAAACGTTTTGGCGTGGAAACCGAGTC TGACCTTCCTGCGTCTCAGCAGGCAGATCTTGGTCCTAGGAGGGAAGACG AGGAGTTGTCTGACAAGCCTATGCGCTCAGCTGTCTGGAGTTTGATACGG TTAAGTGGTATGACGAGACCTGATATAGCCAGTGCGGTACGGGCAGTAGC GAGGGAAGCCCACAATCCTACGGAAAGGCACTGGAAAGCGGTAAAGATCA TCTCGTACCTCAAGAGAACGAAAGACTTGGGGTTAGTGTTCGAAAGGGTA GTTGGCTTAATCTGTCAGTGTACGTAGACGCAGATTATGCAGACAGGTCC AACTGGAGGCGTTTGGTGTCAGGCGTGGCAGTAATGTTAGGGGGGAGTGT AGTGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig55870:86..1042-

>mRNA_H-paniculata_contig55870.13101.1 ID=mRNA_H-paniculata_contig55870.13101.1|Name=mRNA_H-paniculata_contig55870.13101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig55870:86..1042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTCCAGAGGGTTGTAGAGACAAATGGGGTAGAGTAGTAAGGCT
GAGTAAGGCCATATATGGTCTAAAGCAGGGTGGACGGATGTGGTCAAAGC
GCCTCGTAGAAAAAATCGGTATGGCGCAATCCAAGTCTGACCCTTGCGTG
TTCAGGGTCGAGAAGCGTGGAGTGGTAGATATGATTATGTGTGTTCATGT
AGATGATATGATTGTTTCTGGTAAGAGTGTGGAGTGTGATTCCCTGCTTG
CAGCGTTAAAGGCGGAGTTCCAAACCATGCGAGGCGAGCTCAAGTGGTAC
CCGGGTTGCGCATTTTGGCGTGACATGGTGAGGAGTTGTCCGCATCACGC
AACGGACATTCATTGAATGAAGCTTCCAGAGGGTTGTAGAGACAAATGGG
GTAGAGTAGTAAGGCTGAGTAAGGCCATATATGGTCTAAAGCAGGGTGGA
CGGATGTGGTCAAAGCGCCTCGTAGAAAAAATCGGTATGGCGCAATCCAA
GTCTGACCCTTGCGTGTTCAGGGTCGAGAAGCGTGGAGTGGTAGATATGA
TTATGTGTGTTCATGTAGATGATATGATTGTTTCTGGTAAGAGTGTGGAG
TGTGATTCCCTGCTTGCAGCGTTAAAGGCGGAGTTCCAAACCATGCGAGG
CGAGCTCAAGTGGTACCCGGGTTGCGCATTTTGGCGTGACATGGTGAGGA
GTTGTCCGCATCACGCAACGGACATTCATTGA
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