prot_H-paniculata_contig5586.13099.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5586.13099.1
Unique Nameprot_H-paniculata_contig5586.13099.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length72
Homology
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BLAST of mRNA_H-paniculata_contig5586.13099.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.190e-28
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    5 NCSTGCRPDLTGRKDHPFQCDACPLSFPMATQLSDHLERAHDIYKHPSLITPNKNLSVGLAAD 67
            N STGCRPD TG+KDHPF C  CP+SFPMAT LSDHLERAH I+KHPSLITPNK LS GLAA+
Sbjct:  338 NFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSAGLAAE 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5586.13099.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE9.190e-2879.37C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 24..45
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 22..50
score: 9.078
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 17..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5586contigH-paniculata_contig5586:130..345 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5586.13099.1mRNA_H-paniculata_contig5586.13099.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5586 130..345 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5586.13099.1 ID=prot_H-paniculata_contig5586.13099.1|Name=mRNA_H-paniculata_contig5586.13099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MHPSNCSTGCRPDLTGRKDHPFQCDACPLSFPMATQLSDHLERAHDIYKH
PSLITPNKNLSVGLAADVHNP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf