mRNA_H-paniculata_contig5586.13099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5586.13099.1
Unique NamemRNA_H-paniculata_contig5586.13099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5586.13099.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.190e-28
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   13 NCSTGCRPDLTGRKDHPFQCDACPLSFPMATQLSDHLERAHDIYKHPSLITPNKNLSVGLAAD 201
            N STGCRPD TG+KDHPF C  CP+SFPMAT LSDHLERAH I+KHPSLITPNK LS GLAA+
Sbjct:  338 NFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSAGLAAE 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5586.13099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE9.190e-2879.37C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5586contigH-paniculata_contig5586:130..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-21_006030.1
Exons1
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.7634084-CDS-H-paniculata_contig5586:129..3451622930590.7634084-CDS-H-paniculata_contig5586:129..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5586 130..345 +
1691481362.0692925-CDS-H-paniculata_contig5586:129..3451691481362.0692925-CDS-H-paniculata_contig5586:129..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5586 130..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5586.13099.1prot_H-paniculata_contig5586.13099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5586 130..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5586.13099.1

>prot_H-paniculata_contig5586.13099.1 ID=prot_H-paniculata_contig5586.13099.1|Name=mRNA_H-paniculata_contig5586.13099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MHPSNCSTGCRPDLTGRKDHPFQCDACPLSFPMATQLSDHLERAHDIYKH
PSLITPNKNLSVGLAADVHNP*
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mRNA from alignment at H-paniculata_contig5586:130..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5586.13099.1 ID=mRNA_H-paniculata_contig5586.13099.1|Name=mRNA_H-paniculata_contig5586.13099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig5586:130..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCATCAAACTGCAGCACCGGCTGTCGCCCGGATCTAACGGGAAG
AAAGGATCACCCTTTTCAGTGTGACGCGTGCCCCCTGTCGTTCCCGATGG
CCACCCAGCTCTCCGACCACCTGGAACGGGCGCACGACATCTATAAACAC
CCTTCTCTTATCACTCCTAACAAGAATCTCTCAGTGGGCCTTGCCGCAGA
TGTACATAACCCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5586:130..345+

>mRNA_H-paniculata_contig5586.13099.1 ID=mRNA_H-paniculata_contig5586.13099.1|Name=mRNA_H-paniculata_contig5586.13099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5586:130..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCATCAAACTGCAGCACCGGCTGTCGCCCGGATCTAACGGGAAG
AAAGGATCACCCTTTTCAGTGTGACGCGTGCCCCCTGTCGTTCCCGATGG
CCACCCAGCTCTCCGACCACCTGGAACGGGCGCACGACATCTATAAACAC
CCTTCTCTTATCACTCCTAACAAGAATCTCTCAGTGGGCCTTGCCGCAGA
TGTACATAACCCTTGAATGCATCCATCAAACTGCAGCACCGGCTGTCGCC
CGGATCTAACGGGAAGAAAGGATCACCCTTTTCAGTGTGACGCGTGCCCC
CTGTCGTTCCCGATGGCCACCCAGCTCTCCGACCACCTGGAACGGGCGCA
CGACATCTATAAACACCCTTCTCTTATCACTCCTAACAAGAATCTCTCAG
TGGGCCTTGCCGCAGATGTACATAACCCTTGA
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