mRNA_H-paniculata_contig5583.13094.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5583.13094.1
Unique NamemRNA_H-paniculata_contig5583.13094.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5583.13094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5583contigH-paniculata_contig5583:5443..7899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1101
Cds size1083
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5583.13094.1prot_H-paniculata_contig5583.13094.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5583 5443..7882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.1886647-CDS-H-paniculata_contig5583:5442..58161622930590.1886647-CDS-H-paniculata_contig5583:5442..5816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5583 5443..5816 -
1691481361.83261-CDS-H-paniculata_contig5583:5442..58161691481361.83261-CDS-H-paniculata_contig5583:5442..5816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5583 5443..5816 -
1622930590.2108214-CDS-H-paniculata_contig5583:7173..78821622930590.2108214-CDS-H-paniculata_contig5583:7173..7882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5583 7174..7882 -
1691481361.843119-CDS-H-paniculata_contig5583:7173..78821691481361.843119-CDS-H-paniculata_contig5583:7173..7882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5583 7174..7882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.2335856-UTR-H-paniculata_contig5583:7882..78991622930590.2335856-UTR-H-paniculata_contig5583:7882..7899Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5583 7883..7899 -
1691481361.8523033-UTR-H-paniculata_contig5583:7882..78991691481361.8523033-UTR-H-paniculata_contig5583:7882..7899Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5583 7883..7899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5583.13094.1

>prot_H-paniculata_contig5583.13094.1 ID=prot_H-paniculata_contig5583.13094.1|Name=mRNA_H-paniculata_contig5583.13094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=361bp
MAPDKEGEGAPPPPPPPPRASSIDALPLPPPPPPPPRGGAPGLSTSVSAA
SPPEVSPTPTPTAAPATAGEAGGTTGAGGAVAAAHGGGEGKDVVASSPGL
ALLPPPPPPPPPPPRPVGPDPSTKATVLNKEVRVAPPPPPRPGLLVPAAN
KAPAPPGPPPRAPVNAEVRGGGGSGSDGDVAAPPPPPRVLSKDVNGVVPP
PPPPRKKDGEGRIGSNVGAEGGRGLAQGNGLLLQGGGGPEDQKSPRQPPP
QRPLAPPNDTNTPPAAAARGPMLPPGGGETGPMRGGRGSPGRGPPPPPLG
PRGPPPRMPSNGPGTFPPAGRGMLPPGGGMIQGPPMMHPGRGGAGRGGGE
GRRPMFMDGRG
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mRNA from alignment at H-paniculata_contig5583:5443..7899-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5583.13094.1 ID=mRNA_H-paniculata_contig5583.13094.1|Name=mRNA_H-paniculata_contig5583.13094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2457bp|location=Sequence derived from alignment at H-paniculata_contig5583:5443..7899- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCAAGGTCAGCACGATGGCGCCCGACAAAGAAGGCGAGGGGGCACCA
CCCCCTCCACCCCCTCCACCTCGAGCTTCCTCGATTGATGCCCTGCCGCT
ACCGCCGCCCCCACCTCCCCCGCCGCGGGGCGGAGCCCCAGGCCTCTCAA
CGTCTGTTTCTGCCGCGTCGCCTCCTGAGGTATCACCTACACCTACACCC
ACAGCAGCACCAGCAACAGCCGGAGAAGCAGGAGGAACAACAGGAGCAGG
AGGGGCGGTAGCAGCAGCACATGGAGGAGGAGAAGGGAAAGATGTCGTTG
CTTCTTCACCCGGACTGGCGCTGTTGCCACCGCCGCCGCCTCCGCCGCCG
CCGCCACCGCGTCCAGTAGGTCCCGATCCTAGCACAAAAGCAACGGTACT
CAATAAAGAAGTACGGGTCGCCCCACCCCCGCCTCCTAGACCGGGGTTGC
TAGTTCCAGCTGCCAATAAAGCGCCGGCTCCTCCAGGCCCTCCGCCGAGG
GCGCCTGTGAATGCTGAAGTCAGAGGGGGTGGTGGTAGTGGTAGTGACGG
CGATGTTGCAGCGCCCCCGCCACCTCCGCGGGTACTGTCGAAAGATGTAA
ATGGTGTGGTGCCGCCCCCACCGCCGCCAAGGAAGAAAGATGGAGAGGGC
AGGATCGGCTCCAATGTGGGGGCTGAAGGTGGACGTGGATTGGCTCAGGG
GAACGGTTTGCTATTGCAGGGTGGAGGTGAGGCCGATGCGTTTGTTCCTT
GTGTGTGGTTCTTGGAAGGTGCAGGGTAGTGCGTTTGGCGAAGGTTTCAG
TTACATACCGGCTTGGTGTGGGGTGTTTAGACGTTCGGTGAAGTCCTCAG
CCAGTCGAACAAATTTTTTAACCTAGACAGTGTGAGATGAATGTGGTCCT
GAACAGGAGGAGCATCTCTCTGTCTGTAGATTGTCGGCTGCTCGAGAAAG
GGGACTGTCCGCAACACAGTGTGGTGCGTTGAGCTCGTTGCACTTGGCTG
GAATGCACGGCATTCATCGATTACTTCGCACGGAGACTTTCATGTACCGT
ACCGTACCATACTGTACCTTACCGTACTGTACTCTACTGTACTCTACTGT
GCTGAACTACCTGTGTGTATTTCTTCCACGCCGCTCCTCTGATTTTCGTA
TTCCCCGTGACTGCTGATGGTGCTTTCTGTTTGAAAAATACTACTGTTTG
TGCAATCATTGGACGGGTAAACAAACACCCAACAAAATATGAGGGAACCA
ACAGACAGTACCGTCAGTATAGTCCATGGATGACGCGGGTACAGAAAAGG
GAAATAGGGGAGCGATTAGACTTGAATGCCTGCCCACTCCGTGCTCCACA
GCAACACCTCCCTTTTTCAGTAGGATGACCTCAATGATCGCATTCCTCAC
GTACCACCTGTTCAGAATCGTGATATTTTTGTATACAGTACAGTATACTG
CTACCTGCTGCAAGGCAAGTTCGCCTGTGCGCCGCATTTTCCCTGGTACC
AATGTAGCCACAATCACCGCCAAACATGCAGCGATTGAATCCTCTGGCAA
TGGCTCGCTTCGCTTGCATCTGGGCGTTATGACCATGAAGATTCAATTCG
CAATAGTTACTTCAAATAGTACGGTTTGGAAAATTGTTCCGAAGTTACAG
TCACTACACCTTTTCAGTAGTGTAATAAACAGTACTGAACACTACGGTAT
ACTGTTTAGGCGTAGCCTGTTACACTGTTGTATCGCCGTAGTTTAACATT
TGGGTTTTTAGATCAACGCACACTCCTTTTAGAGGCTTTTGGCTACGTGC
CTTCCGTCTGTGACAGTGTCCCAACATCGTTGACTTCCTGTATGCCTGAC
GCAGTGCGGGGAGCACTAATATAGACACGCGATCGGTAAGCTCACTCTCC
CGCCTGTAATCTTTAGCTCCAAACACTTTTTTTTCTCTCACCATATCCCT
TCTCATCTCTCAAATCCTTACGTCTTTCCCTTCATGCATGCACTGCTACC
GGCACAGTCGTAGGTGCACCTGCCCCACACTGCCACCAATCCACCCACCT
ATCTCCTCCGAAATTTGCCTGTTGCCTTACAAGGTGGTCCCGAAGACCAG
AAGTCGCCGAGACAACCGCCACCCCAACGCCCGCTTGCCCCGCCAAATGA
TACCAACACGCCTCCCGCCGCGGCCGCGCGCGGGCCAATGCTTCCCCCCG
GCGGCGGAGAGACTGGACCAATGAGAGGAGGCAGAGGATCGCCCGGACGC
GGTCCCCCGCCTCCACCCTTGGGCCCTCGGGGCCCACCGCCAAGAATGCC
TTCCAATGGCCCAGGAACTTTTCCTCCGGCAGGGAGAGGCATGCTTCCTC
CTGGCGGAGGAATGATACAGGGACCCCCCATGATGCATCCAGGTAGGGGG
GGCGCTGGGCGCGGGGGGGGCGAGGGAAGAAGGCCCATGTTCATGGACGG
ACGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5583:5443..7899-

>mRNA_H-paniculata_contig5583.13094.1 ID=mRNA_H-paniculata_contig5583.13094.1|Name=mRNA_H-paniculata_contig5583.13094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig5583:5443..7899- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCCGACAAAGAAGGCGAGGGGGCACCACCCCCTCCACCCCCTCC
ACCTCGAGCTTCCTCGATTGATGCCCTGCCGCTACCGCCGCCCCCACCTC
CCCCGCCGCGGGGCGGAGCCCCAGGCCTCTCAACGTCTGTTTCTGCCGCG
TCGCCTCCTGAGGTATCACCTACACCTACACCCACAGCAGCACCAGCAAC
AGCCGGAGAAGCAGGAGGAACAACAGGAGCAGGAGGGGCGGTAGCAGCAG
CACATGGAGGAGGAGAAGGGAAAGATGTCGTTGCTTCTTCACCCGGACTG
GCGCTGTTGCCACCGCCGCCGCCTCCGCCGCCGCCGCCACCGCGTCCAGT
AGGTCCCGATCCTAGCACAAAAGCAACGGTACTCAATAAAGAAGTACGGG
TCGCCCCACCCCCGCCTCCTAGACCGGGGTTGCTAGTTCCAGCTGCCAAT
AAAGCGCCGGCTCCTCCAGGCCCTCCGCCGAGGGCGCCTGTGAATGCTGA
AGTCAGAGGGGGTGGTGGTAGTGGTAGTGACGGCGATGTTGCAGCGCCCC
CGCCACCTCCGCGGGTACTGTCGAAAGATGTAAATGGTGTGGTGCCGCCC
CCACCGCCGCCAAGGAAGAAAGATGGAGAGGGCAGGATCGGCTCCAATGT
GGGGGCTGAAGGTGGACGTGGATTGGCTCAGGGGAACGGTTTGCTATTGC
AGGGTGGAGATGGCGCCCGACAAAGAAGGCGAGGGGGCACCACCCCCTCC
ACCCCCTCCACCTCGAGCTTCCTCGATTGATGCCCTGCCGCTACCGCCGC
CCCCACCTCCCCCGCCGCGGGGCGGAGCCCCAGGCCTCTCAACGTCTGTT
TCTGCCGCGTCGCCTCCTGAGGTATCACCTACACCTACACCCACAGCAGC
ACCAGCAACAGCCGGAGAAGCAGGAGGAACAACAGGAGCAGGAGGGGCGG
TAGCAGCAGCACATGGAGGAGGAGAAGGGAAAGATGTCGTTGCTTCTTCA
CCCGGACTGGCGCTGTTGCCACCGCCGCCGCCTCCGCCGCCGCCGCCACC
GCGTCCAGTAGGTCCCGATCCTAGCACAAAAGCAACGGTACTCAATAAAG
AAGTACGGGTCGCCCCACCCCCGCCTCCTAGACCGGGGTTGCTAGTTCCA
GCTGCCAATAAAGCGCCGGCTCCTCCAGGCCCTCCGCCGAGGGCGCCTGT
GAATGCTGAAGTCAGAGGGGGTGGTGGTAGTGGTAGTGACGGCGATGTTG
CAGCGCCCCCGCCACCTCCGCGGGTACTGTCGAAAGATGTAAATGGTGTG
GTGCCGCCCCCACCGCCGCCAAGGAAGAAAGATGGAGAGGGCAGGATCGG
CTCCAATGTGGGGGCTGAAGGTGGACGTGGATTGGCTCAGGGGAACGGTT
TGCTATTGCAGGGTGGAGGTGGTCCCGAAGACCAGAAGTCGCCGAGACAA
CCGCCACCCCAACGCCCGCTTGCCCCGCCAAATGATACCAACACGCCTCC
CGCCGCGGCCGCGCGCGGGCCAATGCTTCCCCCCGGCGGCGGAGAGACTG
GACCAATGAGAGGAGGCAGAGGATCGCCCGGACGCGGTCCCCCGCCTCCA
CCCTTGGGCCCTCGGGGCCCACCGCCAAGAATGCCTTCCAATGGCCCAGG
AACTTTTCCTCCGGCAGGGAGAGGCATGCTTCCTCCTGGCGGAGGAATGA
TACAGGGACCCCCCATGATGCATCCAGGTAGGGGGGGCGCTGGGCGCGGG
GGGGGCGAGGGAAGAAGGCCCATGTTCATGGACGGACGAGGTGTGGTCCC
GAAGACCAGAAGTCGCCGAGACAACCGCCACCCCAACGCCCGCTTGCCCC
GCCAAATGATACCAACACGCCTCCCGCCGCGGCCGCGCGCGGGCCAATGC
TTCCCCCCGGCGGCGGAGAGACTGGACCAATGAGAGGAGGCAGAGGATCG
CCCGGACGCGGTCCCCCGCCTCCACCCTTGGGCCCTCGGGGCCCACCGCC
AAGAATGCCTTCCAATGGCCCAGGAACTTTTCCTCCGGCAGGGAGAGGCA
TGCTTCCTCCTGGCGGAGGAATGATACAGGGACCCCCCATGATGCATCCA
GGTAGGGGGGGCGCTGGGCGCGGGGGGGGCGAGGGAAGAAGGCCCATGTT
CATGGACGGACGAGGT
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