mRNA_H-paniculata_contig5582.13093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5582.13093.1
Unique NamemRNA_H-paniculata_contig5582.13093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5582.13093.1 vs. uniprot
Match: D7G7A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.370e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  715 EWTELGLKFEGTFKNDRRMGRGSIIFPDNSR 807
            EWTE+GL FEG F +DRR GRGSI+FPD SR
Sbjct:   55 EWTEVGLTFEGMFHDDRRTGRGSIVFPDGSR 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5582.13093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7A2_ECTSI1.370e-674.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5582contigH-paniculata_contig5582:8790..13425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_003590.1
Exons6
Model size825
Cds size825
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5582.13093.1prot_H-paniculata_contig5582.13093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5582 8790..13425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930589.7598279-CDS-H-paniculata_contig5582:8789..90111622930589.7598279-CDS-H-paniculata_contig5582:8789..9011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 8790..9011 -
1691481361.6667325-CDS-H-paniculata_contig5582:8789..90111691481361.6667325-CDS-H-paniculata_contig5582:8789..9011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 8790..9011 -
1622930589.7768207-CDS-H-paniculata_contig5582:9577..97591622930589.7768207-CDS-H-paniculata_contig5582:9577..9759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 9578..9759 -
1691481361.6782362-CDS-H-paniculata_contig5582:9577..97591691481361.6782362-CDS-H-paniculata_contig5582:9577..9759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 9578..9759 -
1622930589.7990227-CDS-H-paniculata_contig5582:10552..106551622930589.7990227-CDS-H-paniculata_contig5582:10552..10655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 10553..10655 -
1691481361.6882012-CDS-H-paniculata_contig5582:10552..106551691481361.6882012-CDS-H-paniculata_contig5582:10552..10655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 10553..10655 -
1622930589.816633-CDS-H-paniculata_contig5582:11355..115001622930589.816633-CDS-H-paniculata_contig5582:11355..11500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 11356..11500 -
1691481361.6995173-CDS-H-paniculata_contig5582:11355..115001691481361.6995173-CDS-H-paniculata_contig5582:11355..11500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 11356..11500 -
1622930589.8369641-CDS-H-paniculata_contig5582:12568..126371622930589.8369641-CDS-H-paniculata_contig5582:12568..12637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 12569..12637 -
1691481361.709383-CDS-H-paniculata_contig5582:12568..126371691481361.709383-CDS-H-paniculata_contig5582:12568..12637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 12569..12637 -
1622930589.8602564-CDS-H-paniculata_contig5582:13321..134251622930589.8602564-CDS-H-paniculata_contig5582:13321..13425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 13322..13425 -
1691481361.718563-CDS-H-paniculata_contig5582:13321..134251691481361.718563-CDS-H-paniculata_contig5582:13321..13425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5582 13322..13425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5582.13093.1

>prot_H-paniculata_contig5582.13093.1 ID=prot_H-paniculata_contig5582.13093.1|Name=mRNA_H-paniculata_contig5582.13093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
GEGTAWYASGNRYVGQWKSGKSNGEGTYFYATGARYEGQFDNGKCQGQGT
YFYANGNKYDGEWKDDMKWGFGKAEYRKKAHYEGHFFKDKRHGFGRMWYA
NAGTYEGEWANGKPHGQGTATHKDGEKYEGTYKAGLYDGEGCYWYTNGAV
YQGEYRDGRVHGRGQATFPSGDSYAGEWEEGAMSGTGVYGFKEEGARRVN
EGNFRNGRMHGIGVYRWPHGDVYRGSWQADRRSGRGRYEWTELGLKFEGT
FKNDRRMGRGSIIFPDNSRCALKY*
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mRNA from alignment at H-paniculata_contig5582:8790..13425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5582.13093.1 ID=mRNA_H-paniculata_contig5582.13093.1|Name=mRNA_H-paniculata_contig5582.13093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4636bp|location=Sequence derived from alignment at H-paniculata_contig5582:8790..13425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGGGCACCGCATGGTACGCCTCGGGGAACCGCTACGTCGGGCAATG
GAAATCTGGAAAATCGAACGGGGAGGGCACCTATTTCTACGCCACTGGCG
CGAGGTTAGATACATCTCTTCTTTTGTTTTTAGTGCACCAACACGCCGAA
TCACATGTTGGAGTTCAGTATGTAATTTACAGCAACATTCACACTTGCGT
GTTGGTTTATGTAACGTACGCAAACGCTCAAATTTCGTGTACAACACACC
AATACAATCAGTGACGCCAAATCACTTGGCTTCAGCATGTCACACCAAAT
TGCCTGGATTTGGTATGCAACACCAAATTACTCGGGTTCAGTAAGAGGCA
CAAAATCGCTTGGATTTAGTATGTGTCACCAGATTACTTGGCTTCAGTAT
GTGACACAAAATCACTCGGGTTCGGTGTTGATACAAAATCACTTGGTTTC
AGTATGCGATACCAAATTACTTGGGTGCAGTATGTGGCACCAAATCACTT
GGGTTTAGTAGGCAATATCAAATTACTTGTTGAGGTCAGCATGGCACGTA
CCAAGACCTTTGTAGGAGTAAACCAAGAACATTCATACTCTTGAGCCCAG
TGCCGAGCATCGAAAACGCTTGCTGTCAGTATAACACGTACTCAAATAGA
ACGGTTCAGGTAGGTTTTGTTGTCGACACATTCACCCATGTTTGCTGTTT
CATTACTATTCGTGTTATACATGGATATATTTTAACGTTTTATACAACAC
ATACACGTAATTTTTTGTGTCGTTTCCATGATGATCAGGTATGAGGGTCA
GTTCGACAATGGAAAATGTCAGGGACAAGGGACGTACTTCTACGCCAACG
GCAACAAGTGAGCTTCGTGGAGTTAACTAGCTTTTTCGTACCCGCTTAGA
GATGAAATATATTTTGGAACTTGATCGCGAGGACGTTTGTTACGTAATAT
ACCTCTCATCGCCTATCACTTCTTATCAGCTTCGCATGTTTTTGAAGTTT
ATTGACGTCGCTCTGTGTCAGGTTTTGGGCAAATCGTTGGAAAATAACCA
AATCGATTTGGCGGAAGTAACACTGTAGAGAAAGGCAGCCACATACCATG
TACCAGTATTTCGTAATCGTCACCCGTGAATAATGACGAATTAATAATGA
TGAATGCATCAGCCTCGAAGGAGCCATTCAGCTGGCTGGGCAGTCCCTGC
TTTTGAGAGGTTGGTGTATGAATGGATGCTTTGAAATCGTACATAATGGA
GAATTTGATGTATTAGGGGGGAGAAATATAATAGTAAGGAGAAACGCCAT
ATTATCAACAATTACATGCACTTTATTTCGGCCGTTATGTTTTTTTAATT
ATTATTTAGACTGAATCCAAGTAAAAAGAAAAATAATATTGGGAAAACGT
GGCCCCGACTTTTGAAAGGATTGAGTTGTCCAAACCAGCCGTCTGATGTT
GCTTGAATTAGCATCTTGGCGAAGTGTCATGGTTCACAGTGAAGCATGCG
TTGGTGAATGCATTCGTCGTGGTTTACGAGTGTTTTGGTCTCTAGGGGGT
CCAATTCCCAAGTGGTTGACGGGTAAAGAGCCATTCCGTAGTCGAACGAC
GAGAGCCTTATGTTGTATGAATCTTTATAAAAAGGAATAAGCAAAAAGCA
ATCGTGCAGTATGGCAACAATAACGAGGTACAAAGGCGTTCAACCATGGA
TATGGATGATGACATATTAACATGATGATCCTAAATGGACCAAGTTACGA
CGCACTAGCTATTATTGGTGACTGTAACCCCTAGCTTGCTTTTCATATTA
CATGTTTACCGCGGTAGCTAGTGTACACATTAATCAAGTATATAAAGCTC
TCAACCACCACAAATTGGATTGTGACTAAAGTGGCGTGTTGATGTGGTTG
CGGGTGATGTCATGGCTCGAACAAGATACGACGGCGAGTGGAAGGATGAC
ATGAAGTGGGGGTTCGGCAAGGCAGAATACCGCAAGAAGGCTCATTACGA
GGGTCACTTCTTCAAGGACAAGCGCCATGGTTTCGGTCGGATGTGGTACG
CTAACGCTGGGACATACGAGGTGTGTGCGCACTATACATGTATCTGCGCG
AATATTTCCCAGTATCTGTTGGATGACAAGAAGCAGTGCGGTGCATTTTT
GTTATTGTTTTATGATCGAATTTACACATGGTCGACTCCCACCACTGGGT
GAACGATTGAAATGGCGCGATGCAATACATACGGCCATGTGTAAATGTAC
TATACTATACTGCATAGAAAGGTGAATGTTGATGTGTTCTATGTAGCATT
GGTCGTACATTACATGGATGATGGACTGCGAATGTGACGTTTCTGTGAGT
ACTATGATACATGGAGTATTGCACGTATTTTAGCACGAACTGTACTGGAC
ATGAATGAACAACAGTCCAACAGGCTACAAATTACACGTCCACACCCCGT
AACGTAACAGGAGTCAGGACAGGTAAAAGACCGCGTGTAAAAGATTTGAC
TGAGCGGCTGAAAAAACAGTGCTGCGGAGTAAACTTATATCGCTCTTCAC
GCGAGTGAAAAGATTCGCTTTTGCTTGAAGGTTTTTTTGGGTTTTTTTCA
GTTTGTTGTTATATCAGATCTGCCAGTATGTAAACATATACATATACATA
TACATATCAAATTTAGCGTGTTTTTGCAGGAGTGTTGATGGTCATACTCC
TTATTTGGTTTGGCCTTGACGTCATTTCTTGTCCTGTCCTTTCTCTGTTC
ACACCCACCCTTTTGCCTAGGGGGAGTGGGCAAACGGCAAGCCTCACGGG
CAGGGCACCGCGACGCACAAAGATGGAGAAAAGTATGAGGGCACGTACAA
GGCAGGACTGTACGATGGAGAGGGTGAGTAACTGAGTAACTAAGTGACTG
AGTGACGGGGTGACTGAGAAGAGAAGCAAGGGTGATGATGGTATCATGCT
GGGAGACAGGAGCCCAGTTTTTCCGACGTAGTGGGGGGCACTTCAAAAAG
GGCTGAATCGGGATCGTGGTATCCATTGCATTGCACTGCGCGTGTGAGCA
AGCGTTGGAAAATAAGCTCATTTGGTATTGGCCTTCATCGGCGTGCACGA
TGAGCGTGGATCAACCTGTGCTGCTCTTTCGGCGGAGGGTGAAATGCCGA
CGGATCACCAATGCTGTTTGTCAGTTAGGATGACAGCTCACTCCTTCGGA
ATGAATGCACGTTCAATCGTCACTTTTTTTATTAGTGTCCAGCATATTAG
CGACTATTTTTTGCGTGAAAAATATGACCGAAAAAGCAGACAGCAGGAAA
CAGATTTTCGAGGTATGAAAGCCCCTCCCCTCCCCCCTCAATGGTTAAAA
CACATGCACATGAGTTATTTTATACCGTATTTGTCTTGTATTTGTGAGTC
GAACTCAAAAAGGAGCATGGTCAGAAAAAGAGGTTAAATGGTTGCAAAAT
CTACGGAGATCTTGATAGAATATATTTGGAGTTAATATAGATTAGAGATA
GGGTGCTCTATTGGTACGCGAACGGAGCTGTTTACGAGGTACGAGGGTGA
CAATATCAATTTTTAAAAAAATACTAAAATGTGAACCTTGTTCAGAAAAT
AGCTACAATGGTTGCATGTTTACGTAGATATTGAGGAAATGCTGTTTTTT
TCAAACTTATGTTCAGGGTGTTACTGGTACACGAACGGAGCTGTGTACCA
GGGAGAGTATCGGGACGGAAGAGTTCACGGCAGAGGACAAGCAACTTTCC
CGTCGGGCGATAGCTACGCTGGCGAATGGGAAGAGGGCGCCATGTCAGGC
ACAGGGGTGTACGGTTTCAAGGAAGAGGGGGCCAGGCGAGTGAACGAGGT
TCGCTGTTTTGCTTCGTAGACGTGCATTGCCTGCGAGTGACGGTTGGAGA
ATGACGCAGTGATGTATGATGATGCGGGGGCAATTGGCCGAATAGGTTGG
AGTTCTTGGTGCTTGCGGTTTTTTAGGGGGGTGTTTTAGGTTTTTTTGCT
GATCAGATATGAAATCATTGTTGGTGCGTTATCGATAGGTTTGTTTGACT
AGAGGTGGTGACGTACCTTAGCCGTCATGACGTTGGGTTTATTCATAGTG
CTTCTGTTAATGGCGCAAGTCGTTAAGTTACCCTCTCTTTTGTATGGAGT
ATCCTCCACTTGCGTATTGATCGATTCATTTTCCGATTCCTTTTCGATAT
CACCACTATTACCACCCACCGCAAGAAGTTCATGATTGTACTTACAAATA
TCAAATATGACGCTCTGGCATGAATGAATGAATGAATGCCCTCTCTCGGA
CTGTCTGTACCAGCAATCAAACCGTCTGGCATACATTAGCCCCTTTTTTT
TCCGTTTCATTCCATTAGTTGTTAACACTACTACCGTTGGTACTACTGCT
GCTACAGCTACGAGGGCAACTTCCGAAACGGCCGCATGCACGGCATCGGC
GTCTACCGATGGCCACACGGCGACGTGTATCGCGGGTCGTGGCAGGCGGA
TCGAAGGAGCGGCAGGGGCCGGTACGAGTGGACAGAGCTGGGACTAAAGT
TCGAGGGCACGTTCAAGAATGACCGACGAATGGGACGGGGAAGCATTATC
TTCCCAGATAATTCCAGGTGTGCGCTGAAATACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5582:8790..13425-

>mRNA_H-paniculata_contig5582.13093.1 ID=mRNA_H-paniculata_contig5582.13093.1|Name=mRNA_H-paniculata_contig5582.13093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig5582:8790..13425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGGGCACCGCATGGTACGCCTCGGGGAACCGCTACGTCGGGCAATG
GAAATCTGGAAAATCGAACGGGGAGGGCACCTATTTCTACGCCACTGGCG
CGAGGGCGAGGGCACCGCATGGTACGCCTCGGGGAACCGCTACGTCGGGC
AATGGAAATCTGGAAAATCGAACGGGGAGGGCACCTATTTCTACGCCACT
GGCGCGAGGTATGAGGGTCAGTTCGACAATGGAAAATGTCAGGGACAAGG
GACGTACTTCTACGCCAACGGCAACAAGTATGAGGGTCAGTTCGACAATG
GAAAATGTCAGGGACAAGGGACGTACTTCTACGCCAACGGCAACAAATAC
GACGGCGAGTGGAAGGATGACATGAAGTGGGGGTTCGGCAAGGCAGAATA
CCGCAAGAAGGCTCATTACGAGGGTCACTTCTTCAAGGACAAGCGCCATG
GTTTCGGTCGGATGTGGTACGCTAACGCTGGGACATACGAGATACGACGG
CGAGTGGAAGGATGACATGAAGTGGGGGTTCGGCAAGGCAGAATACCGCA
AGAAGGCTCATTACGAGGGTCACTTCTTCAAGGACAAGCGCCATGGTTTC
GGTCGGATGTGGTACGCTAACGCTGGGACATACGAGGGGGAGTGGGCAAA
CGGCAAGCCTCACGGGCAGGGCACCGCGACGCACAAAGATGGAGAAAAGT
ATGAGGGCACGTACAAGGCAGGACTGTACGATGGAGAGGGGGGAGTGGGC
AAACGGCAAGCCTCACGGGCAGGGCACCGCGACGCACAAAGATGGAGAAA
AGTATGAGGGCACGTACAAGGCAGGACTGTACGATGGAGAGGGGTGTTAC
TGGTACACGAACGGAGCTGTGTACCAGGGAGAGTATCGGGACGGAAGAGT
TCACGGCAGAGGACAAGCAACTTTCCCGTCGGGCGATAGCTACGCTGGCG
AATGGGAAGAGGGCGCCATGTCAGGCACAGGGGTGTACGGTTTCAAGGAA
GAGGGGGCCAGGCGAGTGAACGAGGGTGTTACTGGTACACGAACGGAGCT
GTGTACCAGGGAGAGTATCGGGACGGAAGAGTTCACGGCAGAGGACAAGC
AACTTTCCCGTCGGGCGATAGCTACGCTGGCGAATGGGAAGAGGGCGCCA
TGTCAGGCACAGGGGTGTACGGTTTCAAGGAAGAGGGGGCCAGGCGAGTG
AACGAGGGCAACTTCCGAAACGGCCGCATGCACGGCATCGGCGTCTACCG
ATGGCCACACGGCGACGTGTATCGCGGGTCGTGGCAGGCGGATCGAAGGA
GCGGCAGGGGCCGGTACGAGTGGACAGAGCTGGGACTAAAGTTCGAGGGC
ACGTTCAAGAATGACCGACGAATGGGACGGGGAAGCATTATCTTCCCAGA
TAATTCCAGGTGTGCGCTGAAATACTAGGGCAACTTCCGAAACGGCCGCA
TGCACGGCATCGGCGTCTACCGATGGCCACACGGCGACGTGTATCGCGGG
TCGTGGCAGGCGGATCGAAGGAGCGGCAGGGGCCGGTACGAGTGGACAGA
GCTGGGACTAAAGTTCGAGGGCACGTTCAAGAATGACCGACGAATGGGAC
GGGGAAGCATTATCTTCCCAGATAATTCCAGGTGTGCGCTGAAATACTAG
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