mRNA_H-paniculata_contig5580.13090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5580.13090.1
Unique NamemRNA_H-paniculata_contig5580.13090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5580.13090.1 vs. uniprot
Match: D7FM08_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM08_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.700e-15
Identity = 42/71 (59.15%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  427 YFGMTVDEFRVKVALGSERPHVERRWPKMLQRLLRRCWQTRPVDRPSFDEILGGGVLEEVAGPNSHSFLNF 639
            Y  M   EFR  VALG  RP+VERRWP+ +QRLLRRCW   P  RPSF EIL  GVLE+ AGP    F +F
Sbjct:  257 YEHMGTHEFRATVALGRRRPNVERRWPRSIQRLLRRCWDRDPAVRPSFGEILEAGVLEQAAGPQQSWFHHF 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5580.13090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM08_ECTSI1.700e-1559.15Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5580contigH-paniculata_contig5580:7769..10014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue5.3e-15
Seed eggNOG ortholog2880.D7FM08
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons2
Model size1148
Cds size879
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5580.13090.1prot_H-paniculata_contig5580.13090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5580 8036..10014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930589.5331926-UTR-H-paniculata_contig5580:7768..80351622930589.5331926-UTR-H-paniculata_contig5580:7768..8035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5580 7769..8035 +
1691481361.5798712-UTR-H-paniculata_contig5580:7768..80351691481361.5798712-UTR-H-paniculata_contig5580:7768..8035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5580 7769..8035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930589.5588763-CDS-H-paniculata_contig5580:8035..83711622930589.5588763-CDS-H-paniculata_contig5580:8035..8371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5580 8036..8371 +
1691481361.598259-CDS-H-paniculata_contig5580:8035..83711691481361.598259-CDS-H-paniculata_contig5580:8035..8371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5580 8036..8371 +
1622930589.5717006-CDS-H-paniculata_contig5580:9471..100141622930589.5717006-CDS-H-paniculata_contig5580:9471..10014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5580 9472..10014 +
1691481361.608859-CDS-H-paniculata_contig5580:9471..100141691481361.608859-CDS-H-paniculata_contig5580:9471..10014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5580 9472..10014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5580.13090.1

>prot_H-paniculata_contig5580.13090.1 ID=prot_H-paniculata_contig5580.13090.1|Name=mRNA_H-paniculata_contig5580.13090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
MKFEVSHLHKTNMTVIFLLWHVGLFVKKYTSLPLAPLPQPNTIVLFDRLC
LQAYFGMTVDEFRVKVALGSERPHVERRWPKMLQRLLRRCWQTRPVDRPS
FDEILGGGVLEEVAGPNSHSFLNFFGHGHRTPKVNTIIPPPELGKVAGPK
AVEKAAALAAAAEAAAGGPILGVRTGASILEKTGGISHSHEGASVRGHVW
DTWEVGGEIVASGRPVAAAVAGKVAAAELRNGEDVHDAVGAQRFIQVGPF
RLPFCFFGHNPLGHHRHGNHHNHNRRRRASSRSKNFEGKEEEG
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mRNA from alignment at H-paniculata_contig5580:7769..10014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5580.13090.1 ID=mRNA_H-paniculata_contig5580.13090.1|Name=mRNA_H-paniculata_contig5580.13090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2246bp|location=Sequence derived from alignment at H-paniculata_contig5580:7769..10014+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAGCTGCATACCCAAACATTCTTCAAGTCTATCCGCCCCTCCCGGGATG
CCCAATACCCCATGGCAATACCCATCGGCGTAGCAACGCAAGGATAACGA
CTAATGGTTAGTATTAACCTCATGAACCGCAACCGGGCCGGCGGAAACCC
GGCATGCTCCATCCCGGCGTTGTGAAGATGAGAAATCAATATTTGAGTGG
TTACGGCATACTTTTTCATGAGTACACCCGCCATTAGTGATCTAATTTTG
CTGATCAGTATACACAAATGAAGTTTGAGGTCAGCCATCTACATAAAACT
AACATGACCGTTATATTTCTGCTGTGGCACGTGGGTTTATTTGTGAAAAA
GTACACCTCCCTCCCCCTGGCGCCCCTTCCCCAACCTAACACTATCGTTC
TCTTCGACCGGCTGTGTCTGCAGGCTTACTTTGGGATGACCGTGGACGAA
TTTAGAGTGAAGGTGGCGCTGGGGAGCGAAAGGCCTCACGTGGAGCGGCG
ATGGCCGAAGATGCTGCAGCGCCTCTTGAGACGGTGTTGGCAAACCCGCC
CTGTCGACAGGCCTAGCTTCGATGAGATCCTGGGGGGGGGGGTATTGGAG
GAGGTATGTGCTGTAGCGGAAGCTATGATTTGGACAAACGCATGACTTTT
ACTCGTAACAAAAATAACATGACGGTGTCTATCTCTGTCAGTTCGCCCCT
CCTACCCCTCACTTGTGCTCAAAGTTTGCTCATGGATGGGTATAGTAGCC
GTGAGTGTGGTCTATGAGCCACATCATAATATGTAATACAGGGTACCTGG
TATGTGAGCTAGAGATACTAAAGATTGTGACAAATTTCCCCTTAGTTTGG
TGAGTTTGTGGATAGGTAATGTAGCAACATAAAGATATTGAGAATACCTC
CATTTTGTTGTACAGACTCCCCCCCCCCCGCGCCGAATCCCACCAAAGGT
TGAGGTCGTACGTGCATGAATCACACATAACTTCGTTTGCTGCTTACTGG
TAACTCCAAGGATTGATTGATGCCGTTTCCGGCATATTGTGCGGAACTGC
CTCGGTTATGATTCTGTACTAGGTTCTGCAGTGGTTGGTTGAAGCTTGAC
TGAAACGATTATGCATTTTTCATGTCAGCTTCGCTTGTGTTGAGATGAAA
AAAGGGAAGTCCATTATGCTGTATGCCCACCCCCCGCCATGCGGTGCCTG
AGTACTTGAAAAAATTGCTATGATTTCATGTAGCCATGGTTATGGGCCAA
CACATGTCATCATGATACATGATATGATATGATATCATGTGTGTTCGAGG
GGGAGAAGATAGGTGTTGTTGGTCCTAGTCCTCGCTATGTCATGCGATAC
CTATTTTACATCTTATTATCCACAACGAGCCGATTGAAGTCTAAGCTGCA
CTTTCCGTCCCTCCTCATGGAAGGTAACTTTGCTGAAACATGTAAACACG
TTGTGCAGCTTCGATTTCTATTGGCATGCACAACCTCAGCCATGATTCGT
CACATTACATGAGTGGAACAAGTTTAATTCAGTGTGGTTGAGTGAATTTT
TATCCTCAAGAGTAAAAAAGGAGTCGACCTACGAACGAGATTACTTCCTC
GCCTCCATCGCTTATCCCAATCTCCCACCTCGCCTACCTCATCACCCCGA
CCAATGTCCTGCTTGCTATGCTCACCGCTGTCTACTCTCTACCCCGCTGA
CAGGTGGCGGGTCCCAATTCTCACTCCTTCTTGAATTTCTTCGGCCACGG
CCATCGCACCCCGAAAGTCAACACCATCATCCCCCCACCAGAGCTAGGAA
AGGTGGCTGGCCCCAAGGCCGTGGAAAAAGCCGCAGCTTTGGCGGCGGCG
GCCGAGGCAGCCGCTGGCGGACCAATTCTGGGCGTGCGAACCGGGGCGTC
CATCTTGGAAAAAACCGGGGGGATCAGCCACAGCCACGAGGGTGCAAGCG
TTCGCGGACATGTGTGGGATACTTGGGAAGTGGGCGGGGAAATAGTGGCG
TCGGGCCGCCCGGTGGCGGCGGCGGTAGCGGGGAAGGTAGCGGCGGCAGA
GCTGCGCAACGGAGAGGATGTGCACGATGCCGTCGGTGCCCAGCGGTTTA
TCCAAGTAGGGCCATTTCGACTACCCTTTTGCTTTTTCGGGCACAATCCT
TTGGGTCACCATCGTCACGGTAACCACCACAACCATAACCGCCGACGCCG
GGCCTCGTCGCGAAGTAAAAATTTCGAGGGTAAAGAGGAGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5580:7769..10014+

>mRNA_H-paniculata_contig5580.13090.1 ID=mRNA_H-paniculata_contig5580.13090.1|Name=mRNA_H-paniculata_contig5580.13090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig5580:7769..10014+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTTGAGGTCAGCCATCTACATAAAACTAACATGACCGTTATATT
TCTGCTGTGGCACGTGGGTTTATTTGTGAAAAAGTACACCTCCCTCCCCC
TGGCGCCCCTTCCCCAACCTAACACTATCGTTCTCTTCGACCGGCTGTGT
CTGCAGGCTTACTTTGGGATGACCGTGGACGAATTTAGAGTGAAGGTGGC
GCTGGGGAGCGAAAGGCCTCACGTGGAGCGGCGATGGCCGAAGATGCTGC
AGCGCCTCTTGAGACGGTGTTGGCAAACCCGCCCTGTCGACAGGCCTAGC
TTCGATGAGATCCTGGGGGGGGGGGTATTGGAGGAGATGAAGTTTGAGGT
CAGCCATCTACATAAAACTAACATGACCGTTATATTTCTGCTGTGGCACG
TGGGTTTATTTGTGAAAAAGTACACCTCCCTCCCCCTGGCGCCCCTTCCC
CAACCTAACACTATCGTTCTCTTCGACCGGCTGTGTCTGCAGGCTTACTT
TGGGATGACCGTGGACGAATTTAGAGTGAAGGTGGCGCTGGGGAGCGAAA
GGCCTCACGTGGAGCGGCGATGGCCGAAGATGCTGCAGCGCCTCTTGAGA
CGGTGTTGGCAAACCCGCCCTGTCGACAGGCCTAGCTTCGATGAGATCCT
GGGGGGGGGGGTATTGGAGGAGGTGGCGGGTCCCAATTCTCACTCCTTCT
TGAATTTCTTCGGCCACGGCCATCGCACCCCGAAAGTCAACACCATCATC
CCCCCACCAGAGCTAGGAAAGGTGGCTGGCCCCAAGGCCGTGGAAAAAGC
CGCAGCTTTGGCGGCGGCGGCCGAGGCAGCCGCTGGCGGACCAATTCTGG
GCGTGCGAACCGGGGCGTCCATCTTGGAAAAAACCGGGGGGATCAGCCAC
AGCCACGAGGGTGCAAGCGTTCGCGGACATGTGTGGGATACTTGGGAAGT
GGGCGGGGAAATAGTGGCGTCGGGCCGCCCGGTGGCGGCGGCGGTAGCGG
GGAAGGTAGCGGCGGCAGAGCTGCGCAACGGAGAGGATGTGCACGATGCC
GTCGGTGCCCAGCGGTTTATCCAAGTAGGGCCATTTCGACTACCCTTTTG
CTTTTTCGGGCACAATCCTTTGGGTCACCATCGTCACGGTAACCACCACA
ACCATAACCGCCGACGCCGGGCCTCGTCGCGAAGTAAAAATTTCGAGGGT
AAAGAGGAGGAGGGGGTGGCGGGTCCCAATTCTCACTCCTTCTTGAATTT
CTTCGGCCACGGCCATCGCACCCCGAAAGTCAACACCATCATCCCCCCAC
CAGAGCTAGGAAAGGTGGCTGGCCCCAAGGCCGTGGAAAAAGCCGCAGCT
TTGGCGGCGGCGGCCGAGGCAGCCGCTGGCGGACCAATTCTGGGCGTGCG
AACCGGGGCGTCCATCTTGGAAAAAACCGGGGGGATCAGCCACAGCCACG
AGGGTGCAAGCGTTCGCGGACATGTGTGGGATACTTGGGAAGTGGGCGGG
GAAATAGTGGCGTCGGGCCGCCCGGTGGCGGCGGCGGTAGCGGGGAAGGT
AGCGGCGGCAGAGCTGCGCAACGGAGAGGATGTGCACGATGCCGTCGGTG
CCCAGCGGTTTATCCAAGTAGGGCCATTTCGACTACCCTTTTGCTTTTTC
GGGCACAATCCTTTGGGTCACCATCGTCACGGTAACCACCACAACCATAA
CCGCCGACGCCGGGCCTCGTCGCGAAGTAAAAATTTCGAGGGTAAAGAGG
AGGAGGGG
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