mRNA_H-paniculata_contig5579.13088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5579.13088.1
Unique NamemRNA_H-paniculata_contig5579.13088.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.360e-10
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 PLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNRSVPDNLDLLMSLKS 192
            PL+WW+  + ++P LA+LA  +L I A QAQS+R FS+A L++TKTR R  P+N+ L++ L++
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A667YW07_9TELE (BED-type domain-containing protein n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YW07_9TELE)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-8
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNRSVPDNLDLLMSL 186
            DPL+WWK+H   +P+++ LA   L I A    S+R FS A   ++K R+R +PDN+D L+ L
Sbjct:  514 DPLEWWKKHEQQYPIMSRLARKFLCIPATSVASERVFSAAGQAVSKLRSRLLPDNVDKLIFL 575          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A177WRW2_BATDL (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WRW2_BATDL)

HSP 1 Score: 54.7 bits (130), Expect = 1.220e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNR 150
            DPL+WWK H  DFPLLA +A   LAI    A S+ AFS A  ++T +R R
Sbjct:   70 DPLEWWKRHESDFPLLAKMARDYLAIPVTSASSEHAFSKARHLITDSRTR 119          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 2.040e-7
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNRSVPDNLDLLMSL 186
            D + WWK +   FP+LAA+A   LAI A Q  S+R FS A  I+T TR++ +P+N++ L  L
Sbjct:   16 DIIDWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A177WDT8_BATDL (Uncharacterized protein n=5 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WDT8_BATDL)

HSP 1 Score: 54.7 bits (130), Expect = 2.200e-7
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNR 150
            DPL+WWK H  DFPLLA +A   LAI A  A S+ AFS A  ++T +R R
Sbjct:   97 DPLEWWKHHGLDFPLLAKMARDYLAIPATSASSEHAFSKARHLITDSRTR 146          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A0A1UAD7_ENTIV (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UAD7_ENTIV)

HSP 1 Score: 53.9 bits (128), Expect = 2.560e-7
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNRSVPDNLDLLMSL 186
            +PL+WWKEHS D+PL++ L    L +LA    S+R FS  +L+ T  R+   P +L+ L+ L
Sbjct:   69 NPLEWWKEHSCDYPLISRLVPKYLCLLASSLSSERLFSECFLVHTPRRSTLTPIHLEQLVFL 130          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: UPI001FA90206 (E3 SUMO-protein ligase ZBED1-like isoform X1 n=4 Tax=Scophthalmus maximus TaxID=52904 RepID=UPI001FA90206)

HSP 1 Score: 54.7 bits (130), Expect = 5.760e-7
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNRSVPDNLDLLMSL 186
            +PL WWK+H  ++PLL+ +A   L I      S+R FSTA  I+T  R+   PD+LD ++ L
Sbjct:  287 NPLDWWKDHQSEYPLLSHVAKRYLCIPGTSVSSERVFSTAGDIITAQRSALSPDHLDQILVL 348          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A8C4GFL5_DICLA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4GFL5_DICLA)

HSP 1 Score: 54.7 bits (130), Expect = 5.930e-7
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNRSVPDNLDLLMSL 186
            +PL WW+EH  ++PLL+ LA   L I      S+R FSTA  I+T  R+   P++LD ++ L
Sbjct:  387 NPLNWWREHEREYPLLSKLAKRYLCIPGTSVSSERVFSTAGDIITAQRSALTPEHLDQILFL 448          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A177WH44_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WH44_BATDL)

HSP 1 Score: 54.7 bits (130), Expect = 5.970e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNR 150
            DPL+WWK H  DFPLLA +A   LAI    A S+ AFS A  ++T +R R
Sbjct:  446 DPLEWWKRHESDFPLLAKMARDYLAIPVTSASSEHAFSKARHLITDSRTR 495          
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Match: A0A177WNS6_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WNS6_BATDL)

HSP 1 Score: 54.7 bits (130), Expect = 6.000e-7
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    1 DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNR 150
            DPL+WWK H  DFPLLA +A   LAI A  A S+ AFS A  ++T +R R
Sbjct:  526 DPLEWWKHHGLDFPLLAKMARDYLAIPATSASSEHAFSKARHLITDSRTR 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5579.13088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE3.360e-1047.62Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A667YW07_9TELE1.920e-843.55BED-type domain-containing protein n=1 Tax=Myripri... [more]
A0A177WRW2_BATDL1.220e-752.00Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ba... [more]
A0A151I7P1_9HYME2.040e-745.16Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A177WDT8_BATDL2.200e-754.00Uncharacterized protein n=5 Tax=Batrachochytrium d... [more]
A0A0A1UAD7_ENTIV2.560e-741.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=En... [more]
UPI001FA902065.760e-741.94E3 SUMO-protein ligase ZBED1-like isoform X1 n=4 T... [more]
A0A8C4GFL5_DICLA5.930e-741.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Di... [more]
A0A177WH44_BATDL5.970e-752.00Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A177WNS6_BATDL6.000e-754.00Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5579contigH-paniculata_contig5579:588..803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.8814425-CDS-H-paniculata_contig5579:587..8031622930588.8814425-CDS-H-paniculata_contig5579:587..803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5579 588..803 -
1691481361.242211-CDS-H-paniculata_contig5579:587..8031691481361.242211-CDS-H-paniculata_contig5579:587..803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5579 588..803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5579.13088.1prot_H-paniculata_contig5579.13088.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5579 588..803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5579.13088.1

>prot_H-paniculata_contig5579.13088.1 ID=prot_H-paniculata_contig5579.13088.1|Name=mRNA_H-paniculata_contig5579.13088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
DPLQWWKEHSGDFPLLAALAMGLLAILAIQAQSKRAFSTAWLILTKTRNR
SVPDNLDLLMSLKSLSEIVEE*
back to top

mRNA from alignment at H-paniculata_contig5579:588..803-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5579.13088.1 ID=mRNA_H-paniculata_contig5579.13088.1|Name=mRNA_H-paniculata_contig5579.13088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig5579:588..803- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCCCTCCAGTGGTGGAAGGAACACTCTGGCGACTTTCCTCTGCTCGC GGCGCTTGCCATGGGCTTGCTCGCCATCCTGGCAATACAAGCACAATCTA AACGCGCGTTCTCGACCGCTTGGCTGATTCTCACCAAGACACGCAACCGA TCGGTCCCGGACAACCTCGACCTACTGATGTCGCTCAAGAGCTTGTCGGA AATAGTCGAGGAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5579:588..803-

>mRNA_H-paniculata_contig5579.13088.1 ID=mRNA_H-paniculata_contig5579.13088.1|Name=mRNA_H-paniculata_contig5579.13088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5579:588..803- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCCCTCCAGTGGTGGAAGGAACACTCTGGCGACTTTCCTCTGCTCGC
GGCGCTTGCCATGGGCTTGCTCGCCATCCTGGCAATACAAGCACAATCTA
AACGCGCGTTCTCGACCGCTTGGCTGATTCTCACCAAGACACGCAACCGA
TCGGTCCCGGACAACCTCGACCTACTGATGTCGCTCAAGAGCTTGTCGGA
AATAGTCGAGGAGTGAGACCCCCTCCAGTGGTGGAAGGAACACTCTGGCG
ACTTTCCTCTGCTCGCGGCGCTTGCCATGGGCTTGCTCGCCATCCTGGCA
ATACAAGCACAATCTAAACGCGCGTTCTCGACCGCTTGGCTGATTCTCAC
CAAGACACGCAACCGATCGGTCCCGGACAACCTCGACCTACTGATGTCGC
TCAAGAGCTTGTCGGAAATAGTCGAGGAGTGA
back to top