mRNA_H-paniculata_contig55784.13087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A6B7EVB8_9PHAE (Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A6B7EVB8_9PHAE) HSP 1 Score: 220 bits (560), Expect = 1.160e-72 Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGW 327
MKNFFLGFFISCLA+ISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSV+AITYQVTNGKNAMPAFGGRLSE+DI+DVANFVLSQSEKGW
Sbjct: 1 MKNFFLGFFISCLAMISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVNAITYQVTNGKNAMPAFGGRLSEEDIQDVANFVLSQSEKGW 109
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A6G6D7E1_ECTSI (Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D7E1_ECTSI) HSP 1 Score: 204 bits (520), Expect = 1.520e-66 Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MKNFFLGFFISCLALISFYN AEAVDINNGESVF ANCSACHAGGNNVIMPEKTL+K+ALG N MNSV+AITYQVTNGKNAMPAFGGRLSE DI+DVANFVLS++E GWD
Sbjct: 1 MKNFFLGFFISCLALISFYNSAEAVDINNGESVFVANCSACHAGGNNVIMPEKTLRKEALGANNMNSVNAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSKAEGGWD 110
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A5A4MJ73_9PHAE (Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ73_9PHAE) HSP 1 Score: 203 bits (517), Expect = 4.360e-66 Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGW 327
MKNFFLGFFISCL LISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKK AL NQM SV AITYQVTNGKNAMPAFGGRLSE DI+DVANFVLSQS+K W
Sbjct: 1 MKNFFLGFFISCLTLISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKGALEENQMGSVKAITYQVTNGKNAMPAFGGRLSESDIEDVANFVLSQSDKDW 109
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0F8D4_9PHAE (Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0F8D4_9PHAE) HSP 1 Score: 200 bits (509), Expect = 7.470e-65 Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAV-DINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MKNFF GFFI+CLALISF NPA+AV D+NNG ++FTANCSACHAGGNNVIMPEKTLKKDAL TNQMNS+ AITYQVTNGKNAMPAFGGRLSE DI+DVANFVLSQ++KGWD
Sbjct: 1 MKNFFFGFFIACLALISFQNPAQAVPDLNNGSNIFTANCSACHAGGNNVIMPEKTLKKDALATNQMNSISAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSQADKGWD 111
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A0S0GBE4_COSCS (Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBE4_COSCS) HSP 1 Score: 197 bits (502), Expect = 8.450e-64 Identity = 93/110 (84.55%), Postives = 103/110 (93.64%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MKNFF GFFI+CLALISF NPA+AVDINNGE+VFTANCSACHAGGNNVIMPEKTLKK+AL N+M+SV AITYQVTNGKNAMPAFGGRL+E DI+DVANFVLSQS+K W+
Sbjct: 1 MKNFFFGFFIACLALISFQNPAQAVDINNGENVFTANCSACHAGGNNVIMPEKTLKKEALSQNKMDSVSAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSQSDKNWE 110
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8E8U4P1_9PHAE (Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8E8U4P1_9PHAE) HSP 1 Score: 197 bits (502), Expect = 8.450e-64 Identity = 90/110 (81.82%), Postives = 103/110 (93.64%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MKNFF GFFI+CLALISF NPA+A+DINNGE++FTANCSACHAGGNNVIMPEKTLKKDAL N+MN++ AITYQVTNGKNAMPAFG RL+E DI+DVANFV++QS+KGWD
Sbjct: 1 MKNFFFGFFIACLALISFQNPAQAIDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMNTIGAITYQVTNGKNAMPAFGSRLAETDIEDVANFVITQSDKGWD 110
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0F6Q3_AKKLU (Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Q3_AKKLU) HSP 1 Score: 194 bits (494), Expect = 1.400e-62 Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MK FF GFFI+CL LIS +NPA+AVDINNGE++FTANCSACHAGGNNVIMPEKTLKK+AL N MNSV AITYQVTNGKNAMPAFGGRLSEDDI+DVANFVL+QS KGW+
Sbjct: 1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKNALEENSMNSVGAITYQVTNGKNAMPAFGGRLSEDDIEDVANFVLAQSGKGWE 110
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A516ICP1_9PHAE (Cytochrome c6 n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICP1_9PHAE) HSP 1 Score: 191 bits (485), Expect = 3.310e-61 Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MKNFF GFFI CLALISF NPA+AVDINNGE+VF ANCSACH GG NVIM +KTLKKDAL N MN+VDAITYQVTNGKNAMPAFGGRL+E DI+DVANFVLS+S+KGWD
Sbjct: 1 MKNFFFGFFIVCLALISFQNPAQAVDINNGENVFVANCSACHVGGANVIMVDKTLKKDALDRNSMNTVDAITYQVTNGKNAMPAFGGRLAETDIQDVANFVLSKSDKGWD 110
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0JZA5_9PHAE (Cytochrome c6 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0JZA5_9PHAE) HSP 1 Score: 190 bits (483), Expect = 6.680e-61 Identity = 92/110 (83.64%), Postives = 100/110 (90.91%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
MKNFF GFFI+ LALISF N A+AVDINNG ++FTANCSACHAGGNNVIM EKTLKKDAL NQMNSV AITYQVTNGKNAMPAFGGRL+E DI+DVANFVLS+SE+GWD
Sbjct: 1 MKNFFFGFFIASLALISFQNSAQAVDINNGGNIFTANCSACHAGGNNVIMIEKTLKKDALSDNQMNSVKAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSKSEEGWD 110
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0JYP6_9PHAE (Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JYP6_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.350e-60 Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 1
Query: 1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGW 327
MK FF GFFI+CL LIS +NPA+AVDINNGE++FTANCSACHAGGNNVIMPEKTLKK+AL N MN V+AITYQVTNGKNAMPAFG RLSEDDI+DVANFVLSQ+ K W
Sbjct: 1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKEALSDNLMNKVEAITYQVTNGKNAMPAFGSRLSEDDIEDVANFVLSQAAKDW 109 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig55784.13087.1 >prot_H-paniculata_contig55784.13087.1 ID=prot_H-paniculata_contig55784.13087.1|Name=mRNA_H-paniculata_contig55784.13087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMback to top mRNA from alignment at H-paniculata_contig55784:418..750- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig55784.13087.1 ID=mRNA_H-paniculata_contig55784.13087.1|Name=mRNA_H-paniculata_contig55784.13087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig55784:418..750- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig55784:418..750- >mRNA_H-paniculata_contig55784.13087.1 ID=mRNA_H-paniculata_contig55784.13087.1|Name=mRNA_H-paniculata_contig55784.13087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig55784:418..750- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |