mRNA_H-paniculata_contig55784.13087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55784.13087.1
Unique NamemRNA_H-paniculata_contig55784.13087.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A6B7EVB8_9PHAE (Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A6B7EVB8_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.160e-72
Identity = 105/109 (96.33%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGW 327
            MKNFFLGFFISCLA+ISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSV+AITYQVTNGKNAMPAFGGRLSE+DI+DVANFVLSQSEKGW
Sbjct:    1 MKNFFLGFFISCLAMISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVNAITYQVTNGKNAMPAFGGRLSEEDIQDVANFVLSQSEKGW 109
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A6G6D7E1_ECTSI (Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D7E1_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.520e-66
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MKNFFLGFFISCLALISFYN AEAVDINNGESVF ANCSACHAGGNNVIMPEKTL+K+ALG N MNSV+AITYQVTNGKNAMPAFGGRLSE DI+DVANFVLS++E GWD
Sbjct:    1 MKNFFLGFFISCLALISFYNSAEAVDINNGESVFVANCSACHAGGNNVIMPEKTLRKEALGANNMNSVNAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSKAEGGWD 110
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A5A4MJ73_9PHAE (Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ73_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.360e-66
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGW 327
            MKNFFLGFFISCL LISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKK AL  NQM SV AITYQVTNGKNAMPAFGGRLSE DI+DVANFVLSQS+K W
Sbjct:    1 MKNFFLGFFISCLTLISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKGALEENQMGSVKAITYQVTNGKNAMPAFGGRLSESDIEDVANFVLSQSDKDW 109
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0F8D4_9PHAE (Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0F8D4_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 7.470e-65
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAV-DINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MKNFF GFFI+CLALISF NPA+AV D+NNG ++FTANCSACHAGGNNVIMPEKTLKKDAL TNQMNS+ AITYQVTNGKNAMPAFGGRLSE DI+DVANFVLSQ++KGWD
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVPDLNNGSNIFTANCSACHAGGNNVIMPEKTLKKDALATNQMNSISAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSQADKGWD 111
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A0S0GBE4_COSCS (Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBE4_COSCS)

HSP 1 Score: 197 bits (502), Expect = 8.450e-64
Identity = 93/110 (84.55%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MKNFF GFFI+CLALISF NPA+AVDINNGE+VFTANCSACHAGGNNVIMPEKTLKK+AL  N+M+SV AITYQVTNGKNAMPAFGGRL+E DI+DVANFVLSQS+K W+
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVDINNGENVFTANCSACHAGGNNVIMPEKTLKKEALSQNKMDSVSAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSQSDKNWE 110
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8E8U4P1_9PHAE (Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8E8U4P1_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 8.450e-64
Identity = 90/110 (81.82%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MKNFF GFFI+CLALISF NPA+A+DINNGE++FTANCSACHAGGNNVIMPEKTLKKDAL  N+MN++ AITYQVTNGKNAMPAFG RL+E DI+DVANFV++QS+KGWD
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAIDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMNTIGAITYQVTNGKNAMPAFGSRLAETDIEDVANFVITQSDKGWD 110
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0F6Q3_AKKLU (Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Q3_AKKLU)

HSP 1 Score: 194 bits (494), Expect = 1.400e-62
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MK FF GFFI+CL LIS +NPA+AVDINNGE++FTANCSACHAGGNNVIMPEKTLKK+AL  N MNSV AITYQVTNGKNAMPAFGGRLSEDDI+DVANFVL+QS KGW+
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKNALEENSMNSVGAITYQVTNGKNAMPAFGGRLSEDDIEDVANFVLAQSGKGWE 110
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A516ICP1_9PHAE (Cytochrome c6 n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICP1_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 3.310e-61
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MKNFF GFFI CLALISF NPA+AVDINNGE+VF ANCSACH GG NVIM +KTLKKDAL  N MN+VDAITYQVTNGKNAMPAFGGRL+E DI+DVANFVLS+S+KGWD
Sbjct:    1 MKNFFFGFFIVCLALISFQNPAQAVDINNGENVFVANCSACHVGGANVIMVDKTLKKDALDRNSMNTVDAITYQVTNGKNAMPAFGGRLAETDIQDVANFVLSKSDKGWD 110
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0JZA5_9PHAE (Cytochrome c6 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0JZA5_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 6.680e-61
Identity = 92/110 (83.64%), Postives = 100/110 (90.91%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGWD 330
            MKNFF GFFI+ LALISF N A+AVDINNG ++FTANCSACHAGGNNVIM EKTLKKDAL  NQMNSV AITYQVTNGKNAMPAFGGRL+E DI+DVANFVLS+SE+GWD
Sbjct:    1 MKNFFFGFFIASLALISFQNSAQAVDINNGGNIFTANCSACHAGGNNVIMIEKTLKKDALSDNQMNSVKAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSKSEEGWD 110
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BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Match: A0A8F0JYP6_9PHAE (Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JYP6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.350e-60
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANFVLSQSEKGW 327
            MK FF GFFI+CL LIS +NPA+AVDINNGE++FTANCSACHAGGNNVIMPEKTLKK+AL  N MN V+AITYQVTNGKNAMPAFG RLSEDDI+DVANFVLSQ+ K W
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKEALSDNLMNKVEAITYQVTNGKNAMPAFGSRLSEDDIEDVANFVLSQAAKDW 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55784.13087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVB8_9PHAE1.160e-7296.33Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A6G6D7E1_ECTSI1.520e-6689.09Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A5A4MJ73_9PHAE4.360e-6690.83Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 ... [more]
A0A8F0F8D4_9PHAE7.470e-6585.59Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=... [more]
A0A0S0GBE4_COSCS8.450e-6484.55Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 Rep... [more]
A0A8E8U4P1_9PHAE8.450e-6481.82Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8... [more]
A0A8F0F6Q3_AKKLU1.400e-6283.64Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=... [more]
A0A516ICP1_9PHAE3.310e-6182.73Cytochrome c6 n=2 Tax=Lessonia TaxID=105411 RepID=... [more]
A0A8F0JZA5_9PHAE6.680e-6183.64Cytochrome c6 n=2 Tax=Ecklonia TaxID=105406 RepID=... [more]
A0A8F0JYP6_9PHAE1.350e-6081.65Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55784contigH-paniculata_contig55784:418..750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue5.4e-53
Seed eggNOG ortholog2880.D1J772
Preferred namepetJ
KEGG koko:K08906
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Cytochrome C oxidase, cbb3-type, subunit III
EggNOG OGs2SB8G@2759,COG2010@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.8365855-CDS-H-paniculata_contig55784:417..7501622930588.8365855-CDS-H-paniculata_contig55784:417..750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55784 418..750 -
1691481361.2284799-CDS-H-paniculata_contig55784:417..7501691481361.2284799-CDS-H-paniculata_contig55784:417..750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55784 418..750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55784.13087.1prot_H-paniculata_contig55784.13087.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55784 418..750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55784.13087.1

>prot_H-paniculata_contig55784.13087.1 ID=prot_H-paniculata_contig55784.13087.1|Name=mRNA_H-paniculata_contig55784.13087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MKNFFLGFFISCLALISFYNPAEAVDINNGESVFTANCSACHAGGNNVIM
PEKTLKKDALGTNQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIKDVANF
VLSQSEKGWD*
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mRNA from alignment at H-paniculata_contig55784:418..750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55784.13087.1 ID=mRNA_H-paniculata_contig55784.13087.1|Name=mRNA_H-paniculata_contig55784.13087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig55784:418..750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATTTTTTTTTGGGTTTCTTTATCTCATGCTTAGCTCTGATTAG
TTTTTATAACCCAGCAGAAGCTGTAGATATTAATAATGGAGAAAGTGTTT
TCACTGCGAACTGCTCTGCATGTCACGCTGGTGGGAATAATGTTATTATG
CCTGAAAAAACTTTGAAAAAAGACGCATTAGGGACAAACCAAATGAATAG
TGTTGACGCAATTACTTATCAAGTAACAAATGGAAAGAATGCTATGCCAG
CTTTTGGCGGTCGCTTATCTGAAGATGATATTAAAGATGTAGCTAATTTT
GTTTTATCTCAATCTGAGAAAGGTTGGGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55784:418..750-

>mRNA_H-paniculata_contig55784.13087.1 ID=mRNA_H-paniculata_contig55784.13087.1|Name=mRNA_H-paniculata_contig55784.13087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig55784:418..750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATTTTTTTTTGGGTTTCTTTATCTCATGCTTAGCTCTGATTAG
TTTTTATAACCCAGCAGAAGCTGTAGATATTAATAATGGAGAAAGTGTTT
TCACTGCGAACTGCTCTGCATGTCACGCTGGTGGGAATAATGTTATTATG
CCTGAAAAAACTTTGAAAAAAGACGCATTAGGGACAAACCAAATGAATAG
TGTTGACGCAATTACTTATCAAGTAACAAATGGAAAGAATGCTATGCCAG
CTTTTGGCGGTCGCTTATCTGAAGATGATATTAAAGATGTAGCTAATTTT
GTTTTATCTCAATCTGAGAAAGGTTGGGATTAAATGAAAAATTTTTTTTT
GGGTTTCTTTATCTCATGCTTAGCTCTGATTAGTTTTTATAACCCAGCAG
AAGCTGTAGATATTAATAATGGAGAAAGTGTTTTCACTGCGAACTGCTCT
GCATGTCACGCTGGTGGGAATAATGTTATTATGCCTGAAAAAACTTTGAA
AAAAGACGCATTAGGGACAAACCAAATGAATAGTGTTGACGCAATTACTT
ATCAAGTAACAAATGGAAAGAATGCTATGCCAGCTTTTGGCGGTCGCTTA
TCTGAAGATGATATTAAAGATGTAGCTAATTTTGTTTTATCTCAATCTGA
GAAAGGTTGGGATTAA
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