mRNA_H-paniculata_contig55741.13081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55741.13081.1
Unique NamemRNA_H-paniculata_contig55741.13081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55741.13081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55741contigH-paniculata_contig55741:484..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.231942-CDS-H-paniculata_contig55741:483..7981622930588.231942-CDS-H-paniculata_contig55741:483..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55741 484..798 -
1691481360.984505-CDS-H-paniculata_contig55741:483..7981691481360.984505-CDS-H-paniculata_contig55741:483..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55741 484..798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.2468371-UTR-H-paniculata_contig55741:798..8221622930588.2468371-UTR-H-paniculata_contig55741:798..822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55741 799..822 -
1691481360.9955866-UTR-H-paniculata_contig55741:798..8221691481360.9955866-UTR-H-paniculata_contig55741:798..822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55741 799..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55741.13081.1prot_H-paniculata_contig55741.13081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55741 484..798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55741.13081.1

>prot_H-paniculata_contig55741.13081.1 ID=prot_H-paniculata_contig55741.13081.1|Name=mRNA_H-paniculata_contig55741.13081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEDYRRRLLGMGETITDDRFEGWVLNAMLSEYEHVKAFHLSDPNFGVAKM
KVMMKHTYTNIIANNAKSNGVRGRSSAMAAQGSSGVRTDIECFNCHKFGH
YRSKC
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mRNA from alignment at H-paniculata_contig55741:484..822-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55741.13081.1 ID=mRNA_H-paniculata_contig55741.13081.1|Name=mRNA_H-paniculata_contig55741.13081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig55741:484..822- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCCGGACCTCTACTTCATCCCGATGGAAGACTATCGCAGGAGGTTGCT
TGGAATGGGCGAAACGATCACGGACGACAGATTCGAGGGGTGGGTACTGA
ACGCAATGCTCTCGGAGTACGAGCACGTCAAGGCCTTCCATTTAAGCGAC
CCGAACTTCGGGGTGGCAAAAATGAAGGTGATGATGAAACACACCTACAC
CAACATCATTGCCAACAACGCCAAGTCCAACGGGGTGCGAGGCCGTAGTT
CGGCCATGGCGGCGCAGGGATCGTCAGGAGTTCGCACCGACATCGAGTGC
TTCAACTGCCACAAGTTTGGGCACTACAGGTCCAAGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig55741:484..822-

>mRNA_H-paniculata_contig55741.13081.1 ID=mRNA_H-paniculata_contig55741.13081.1|Name=mRNA_H-paniculata_contig55741.13081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig55741:484..822- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGACTATCGCAGGAGGTTGCTTGGAATGGGCGAAACGATCACGGA
CGACAGATTCGAGGGGTGGGTACTGAACGCAATGCTCTCGGAGTACGAGC
ACGTCAAGGCCTTCCATTTAAGCGACCCGAACTTCGGGGTGGCAAAAATG
AAGGTGATGATGAAACACACCTACACCAACATCATTGCCAACAACGCCAA
GTCCAACGGGGTGCGAGGCCGTAGTTCGGCCATGGCGGCGCAGGGATCGT
CAGGAGTTCGCACCGACATCGAGTGCTTCAACTGCCACAAGTTTGGGCAC
TACAGGTCCAAGTGCATGGAAGACTATCGCAGGAGGTTGCTTGGAATGGG
CGAAACGATCACGGACGACAGATTCGAGGGGTGGGTACTGAACGCAATGC
TCTCGGAGTACGAGCACGTCAAGGCCTTCCATTTAAGCGACCCGAACTTC
GGGGTGGCAAAAATGAAGGTGATGATGAAACACACCTACACCAACATCAT
TGCCAACAACGCCAAGTCCAACGGGGTGCGAGGCCGTAGTTCGGCCATGG
CGGCGCAGGGATCGTCAGGAGTTCGCACCGACATCGAGTGCTTCAACTGC
CACAAGTTTGGGCACTACAGGTCCAAGTGC
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