mRNA_H-paniculata_contig5574.13080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5574.13080.1
Unique NamemRNA_H-paniculata_contig5574.13080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5574.13080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5574contigH-paniculata_contig5574:816..4344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1686
Cds size921
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.1077192-UTR-H-paniculata_contig5574:815..12051622930588.1077192-UTR-H-paniculata_contig5574:815..1205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 816..1205 -
1691481360.9011006-UTR-H-paniculata_contig5574:815..12051691481360.9011006-UTR-H-paniculata_contig5574:815..1205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 816..1205 -
1622930588.1588962-UTR-H-paniculata_contig5574:3213..32441622930588.1588962-UTR-H-paniculata_contig5574:3213..3244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 3214..3244 -
1691481360.9375784-UTR-H-paniculata_contig5574:3213..32441691481360.9375784-UTR-H-paniculata_contig5574:3213..3244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 3214..3244 -
1622930588.1763685-UTR-H-paniculata_contig5574:3269..35491622930588.1763685-UTR-H-paniculata_contig5574:3269..3549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 3270..3549 -
1691481360.9544442-UTR-H-paniculata_contig5574:3269..35491691481360.9544442-UTR-H-paniculata_contig5574:3269..3549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 3270..3549 -
1622930588.1952121-UTR-H-paniculata_contig5574:4280..43441622930588.1952121-UTR-H-paniculata_contig5574:4280..4344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 4281..4344 -
1691481360.9731176-UTR-H-paniculata_contig5574:4280..43441691481360.9731176-UTR-H-paniculata_contig5574:4280..4344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5574 4281..4344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.1194851-CDS-H-paniculata_contig5574:1205..16131622930588.1194851-CDS-H-paniculata_contig5574:1205..1613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5574 1206..1613 -
1691481360.9091601-CDS-H-paniculata_contig5574:1205..16131691481360.9091601-CDS-H-paniculata_contig5574:1205..1613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5574 1206..1613 -
1622930588.1344223-CDS-H-paniculata_contig5574:1979..21481622930588.1344223-CDS-H-paniculata_contig5574:1979..2148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5574 1980..2148 -
1691481360.9176617-CDS-H-paniculata_contig5574:1979..21481691481360.9176617-CDS-H-paniculata_contig5574:1979..2148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5574 1980..2148 -
1622930588.1469646-CDS-H-paniculata_contig5574:2869..32131622930588.1469646-CDS-H-paniculata_contig5574:2869..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5574 2870..3213 -
1691481360.9285858-CDS-H-paniculata_contig5574:2869..32131691481360.9285858-CDS-H-paniculata_contig5574:2869..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5574 2870..3213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5574.13080.1prot_H-paniculata_contig5574.13080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5574 1206..3213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5574.13080.1

>prot_H-paniculata_contig5574.13080.1 ID=prot_H-paniculata_contig5574.13080.1|Name=mRNA_H-paniculata_contig5574.13080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
MTPGEENEAPAGGAFSPARAAMGWECNPSIDTDDNGTGTREATFELQGST
SLNLAHLEEGFLRSFSGTDVLAEETEGGSEPSPGRGRPWWGRKLIQAALV
VMLAIGGRVLMHGERQSSLPRNCSKTADVLGAGGHIPSKRMIPWFGGRIP
GTQWAGVIASWWLNRMARGDKSSATVDVPEGQRRGGFLCSVEQFARAISG
QAQMEYGLTMKNGELVLGAGRFCQVFATSVPRGIDDHLGLGKRGGKVRNA
RGVYNSAGDFEVVSRWGWVLWSTAHPEGKGGGGWRWWRPRKKMDSGTGAP
RARGPR*
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mRNA from alignment at H-paniculata_contig5574:816..4344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5574.13080.1 ID=mRNA_H-paniculata_contig5574.13080.1|Name=mRNA_H-paniculata_contig5574.13080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3529bp|location=Sequence derived from alignment at H-paniculata_contig5574:816..4344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTCTTCTTTCGGAATTCGACAAGGACACAGGAAGCGGAACCTATCAAG
ATTTTCTGGAGCAGGTAATTATATACTGCTGTCTGTGTGTAGACGGATTT
GAATTGGGGTGTGCCATGTTTTCGCCGATCTTGTTGAGTGATCATGATAT
TGGCGGCCACTGTAATAACCAAGTCTGTAACACTAAAACAGACCACACGC
GGCATTCGAGAGGGTAGAGGTACCGCGTGTCTGATGTAGTACATGACTCT
TTTCCTCAGAGTATGGAATGGGCCCAGTTGCGCGATGTGAATGCGTGGCG
TTTGCTGGATTGTCTCGAGGTTTTCCTGGGCTCGCTAGTGTAGTATTTTA
CGATGCACTAGACACGAAAGCTACTGGGTGGCTTTGTCACGATGCCACGA
ACAAATCTCCAACGAACACTGCACCTCCGTCGCGGGAACATCGCCAGGTC
GACGTCAGCCGGGCGAGTCGACCTTTAAGCGCACGCCTGGCCCTTCCCAA
TAGATCTATAGTAATCATGTAGTGTTGAGTAGGGTTGGATAGTGTTGGGT
AGGGTTGGGTAGTGTTGGGACGGTCGGGACGGTCGGGACGGTTGGGTTGG
ATACGGCAGGTTAGACTGTGTTGGGTTTGTTTATGGTGGGTTACGGTGAG
TTGTGTTGCGTTGGGTTGGGTTTCGGGAGTGAGCAAACTGTACCCCCGTT
GCGAGGTCGGCGCCAGCCGGTCGAGCCGATCTTCGAGCGCACACTGAATT
CCGGTTGCACAACGCACGCTGCACCGCCGTGACTCTCTGCAGCAGTTGGC
GATTGTTAGGACTATGGAATGGTCCCCCTCGCTGCAGCGGTTGAGGATTG
GTGGCGTATTGGACAATGCTTTCATGAAGCGGGTGACGCGGCCTACCTCG
CTGCAGGTTTCGACGGCTCCTAGGCAGGGTGTCTCGGTGATTGATGACGA
AACGAGTCCCATGAGTGCCGAGTCAGAAAAGGCGCTGACAGAGGAAGTAG
GATCGATCCATGCGGATTTTCCTCTGCCGCGGCGCACCTGTGTTTCAGGT
GGAAAAGAGCCGGCGACATCAGAGGGTATGGCACCACTTGGTCAGACCAG
GGAACTGGCGGCTAGATCTCGACAGGAGTTGATGACCCCTGGTGAGGAAA
ATGAGGCGCCAGCGGGTGGAGCGTTTTCCCCTGCGAGGGCGGCGATGGGA
TGGGAATGCAATCCTAGCATTGACACCGATGACAACGGCACGGGGACGAG
AGAGGCGACGTTCGAGCTACAAGGTAGCACGAGCCTGAATCTGGCACACC
TAGAGGAAGGGTTTCTCCGTTCTTTCAGCGGCACTGATGTCCTCGCGGAA
GAAACAGAGGGGGGCTCGGAGCCATCGCCGGGCCGCGGCAGGCCGTGGTG
GGGGCGGAAGTTGATCCAAGCGGCCTTGGTGGTAATGTTGGCTATCGGTG
GGAGAGTCCTAATGCACGGGGAAAGGTATGTGTGCGACAGAGTAACAAGG
GTGCGAGTGGCCGATAGTACACATCGCTATGGGGATTCCAATATTTTAGG
GCTGCTGTGGCAGCGTTGCTCGGCGTGAGGTATTTGATACTCCACCAAGA
CTGAACGCCGTGACCAGCGTAATGTGATGAGGTCTGACTTCTCACCGGCG
GGTTGACCTAACAGGACAAGGACGTGATGGTGTTACATCCAACGAGTAAT
TAAGTTGTCTAAAACGACTGATTACGATCCCTTAGTGGTCGAAAACGAAG
CCCATTCTTTTGTTTCTCTGGTTCTCATTACACGGTACGCTTTTTTAAAC
GGTGTGTACGCATGATGTTCTATTTTACAGTCGATCCCTTTCTCAGCTCA
ACCCCTGGCTTAATGAAGATACGCTTCCTCCCATCCATGTTTGCGGGTCT
GAGATGTGAAACGCAAGGCTTAGTAATAAACAGATGTTTGGAGAATCGTC
TCGGACCGGTGGTCACATGTTGGGTAAGATGCGCGCGTGTGCGTTCGTAC
TTTTGACAGTGGGTTGGAAAAATGCTTCGCAATTATTCCGTAACCAAGCA
TATCGCTGTGAGTGATTGTGGACGAAAGGTATTTTGCAGCATCGACCGAG
GTTTTTGCTAACCCTTCTGCACCAGTCTGACCACGCGTATTGTTGCATTC
TGCTGGTACCTCCACCTTGTGTGTGTGTTGTATACGGCCTACTTAGGCAA
TCCAGTCTCCCAAGGAACTGTTCGAAGACAGCGGATGTGCTTGGCGCGGG
TGGCCACATTCCGAGCAAGAGAATGATCCCGTGGTTCGGGGGCCGCATTC
CGGGGACTCAGTGGGCAGGGGTGATTGCATCATGGTGGTTGAATAGGATG
GCTAGAGGCGACAAGGTGACTAATTCCCCATTACACGTAGTGTGCGCCAG
AACACCGAAACCGTTCTTGTTCGCTCGTGCAAGGCACCTCTTTACAGTAG
CTGCTAAATAACAGTACCCAGTAGCGGTAGCAGCGGCTTTGTACACGCAG
CAGGTGATCCATGGCACATGTTATGATCCTAGTTGATGGCGACGCCGCTA
TTTCTGAAGCACGGCAGCACAGTCCGCAACCGATCATGGCCTGTTGTTGT
TTTGTTGGTTAGGGTCTTGGCAGCGCTTGGTTGGCAATACTGAAATAACT
ACATGGCCCATGGTGATACCCGATTGCCCAACCCGCCATTTTCCCTACCC
TTTTGTCGGTGAACTATGAACCATCGGTCAGTCGTCGGCTACGGTGGATG
TGCCTGAGGGACAGAGGCGAGGCGGTTTCTTGTGCAGTGTGGAACAGTTC
GCCAGGGCAATAAGCGGGCAGGCGCAAATGGAATATGGCTTGACCATGAA
GAATGGTGAGCTGGTGCTCGGCGCTGGGAGATTCTGCCAGGTGTTCGCCA
CGTCGGTGCCTCGAGGTATCGATGATCATCTCGGACTGGGTAAGCGCGGC
GGCAAGGTCCGCAATGCTCGTGGTGTCTATAACAGCGCCGGTGACTTCGA
GGTGGTGAGTCGATGGGGATGGGTGCTGTGGAGTACGGCACACCCTGAGG
GCAAGGGTGGTGGAGGCTGGAGGTGGTGGCGGCCTCGGAAGAAGATGGAT
AGCGGGACAGGCGCACCCAGAGCTAGGGGGCCGCGTTAGGAAGACGACGG
CGGGTCTTATTTGCTCTGAGACAGTTTCCCGAGTAACGGCGATTTGCAAT
GTACATCATGCGAACAGTTGTGGCCCAGGCGGGCAGTTAACCCGTGCTTC
CGAGGTAACGGAGCCGGCGGCGATGATCGTGATGAAATGAGTAAGTACGG
TACGCTGTCAAAGGCTCTGGTGAGGGGAGCGGTGGTTGGTAGTCAAAAGG
CGGTGAAGCGGTGTATGGTAGCAACAGGCTCACGGGGAGTTGTCGAGCCG
GATAGGTTTTCGGGTGGTGGTTTGTTCGTCGGATGTTGATGGAAGCGGGT
GTTTTGGGGCGGGGGGTCTGTTTTGTGTATCCTCACGATGTCGATTTGTG
TACAGTTGGGGTGTACGAAGCACGGCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig5574:816..4344-

>mRNA_H-paniculata_contig5574.13080.1 ID=mRNA_H-paniculata_contig5574.13080.1|Name=mRNA_H-paniculata_contig5574.13080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig5574:816..4344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCCTGGTGAGGAAAATGAGGCGCCAGCGGGTGGAGCGTTTTCCCC
TGCGAGGGCGGCGATGGGATGGGAATGCAATCCTAGCATTGACACCGATG
ACAACGGCACGGGGACGAGAGAGGCGACGTTCGAGCTACAAGGTAGCACG
AGCCTGAATCTGGCACACCTAGAGGAAGGGTTTCTCCGTTCTTTCAGCGG
CACTGATGTCCTCGCGGAAGAAACAGAGGGGGGCTCGGAGCCATCGCCGG
GCCGCGGCAGGCCGTGGTGGGGGCGGAAGTTGATCCAAGCGGCCTTGGTG
GTAATGTTGGCTATCGGTGGGAGAGTCCTAATGCACGGGGAAAGATGACC
CCTGGTGAGGAAAATGAGGCGCCAGCGGGTGGAGCGTTTTCCCCTGCGAG
GGCGGCGATGGGATGGGAATGCAATCCTAGCATTGACACCGATGACAACG
GCACGGGGACGAGAGAGGCGACGTTCGAGCTACAAGGTAGCACGAGCCTG
AATCTGGCACACCTAGAGGAAGGGTTTCTCCGTTCTTTCAGCGGCACTGA
TGTCCTCGCGGAAGAAACAGAGGGGGGCTCGGAGCCATCGCCGGGCCGCG
GCAGGCCGTGGTGGGGGCGGAAGTTGATCCAAGCGGCCTTGGTGGTAATG
TTGGCTATCGGTGGGAGAGTCCTAATGCACGGGGAAAGGCAATCCAGTCT
CCCAAGGAACTGTTCGAAGACAGCGGATGTGCTTGGCGCGGGTGGCCACA
TTCCGAGCAAGAGAATGATCCCGTGGTTCGGGGGCCGCATTCCGGGGACT
CAGTGGGCAGGGGTGATTGCATCATGGTGGTTGAATAGGATGGCTAGAGG
CGACAAGGCAATCCAGTCTCCCAAGGAACTGTTCGAAGACAGCGGATGTG
CTTGGCGCGGGTGGCCACATTCCGAGCAAGAGAATGATCCCGTGGTTCGG
GGGCCGCATTCCGGGGACTCAGTGGGCAGGGGTGATTGCATCATGGTGGT
TGAATAGGATGGCTAGAGGCGACAAGTCGTCGGCTACGGTGGATGTGCCT
GAGGGACAGAGGCGAGGCGGTTTCTTGTGCAGTGTGGAACAGTTCGCCAG
GGCAATAAGCGGGCAGGCGCAAATGGAATATGGCTTGACCATGAAGAATG
GTGAGCTGGTGCTCGGCGCTGGGAGATTCTGCCAGGTGTTCGCCACGTCG
GTGCCTCGAGGTATCGATGATCATCTCGGACTGGGTAAGCGCGGCGGCAA
GGTCCGCAATGCTCGTGGTGTCTATAACAGCGCCGGTGACTTCGAGGTGG
TGAGTCGATGGGGATGGGTGCTGTGGAGTACGGCACACCCTGAGGGCAAG
GGTGGTGGAGGCTGGAGGTGGTGGCGGCCTCGGAAGAAGATGGATAGCGG
GACAGGCGCACCCAGAGCTAGGGGGCCGCGTTAGTCGTCGGCTACGGTGG
ATGTGCCTGAGGGACAGAGGCGAGGCGGTTTCTTGTGCAGTGTGGAACAG
TTCGCCAGGGCAATAAGCGGGCAGGCGCAAATGGAATATGGCTTGACCAT
GAAGAATGGTGAGCTGGTGCTCGGCGCTGGGAGATTCTGCCAGGTGTTCG
CCACGTCGGTGCCTCGAGGTATCGATGATCATCTCGGACTGGGTAAGCGC
GGCGGCAAGGTCCGCAATGCTCGTGGTGTCTATAACAGCGCCGGTGACTT
CGAGGTGGTGAGTCGATGGGGATGGGTGCTGTGGAGTACGGCACACCCTG
AGGGCAAGGGTGGTGGAGGCTGGAGGTGGTGGCGGCCTCGGAAGAAGATG
GATAGCGGGACAGGCGCACCCAGAGCTAGGGGGCCGCGTTAG
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