mRNA_H-paniculata_contig55727.13079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55727.13079.1
Unique NamemRNA_H-paniculata_contig55727.13079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 1.830e-8
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    1 IWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLG 231
            +WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q  VD +     L  V ++P L+ +L S+G
Sbjct:  287 VWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME)

HSP 1 Score: 53.5 bits (127), Expect = 2.750e-6
Identity = 29/96 (30.21%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:    4 WICDNGATKHMTHDSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMK-LTQVAFIPLLSYHLLSLGKFADFGHEYRCSREGLRI 285
            WI D+  T HMTH+ DFL N+Q+ D G + L D     ++G        ++ +   +++ LT V ++P L  +L+SLG+    G   +   E +++
Sbjct:   56 WIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGT----CSVQITTHDKMIRILTNVRYVPKLKCNLISLGELDRSGCTIKSENEVMKV 147
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 54.3 bits (129), Expect = 2.750e-6
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    7 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFGHEY 258
            I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+          ++P  + +LLS+ K +D G EY
Sbjct:  400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKA--------LYMPEFASNLLSV-KRSDNGGEY 473
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 54.3 bits (129), Expect = 2.800e-6
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    7 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFGHEY 258
            I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+          ++P  + +LLS+ K +D G EY
Sbjct:  415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKA--------LYMPEFTSNLLSV-KRSDNGGEY 488
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 54.3 bits (129), Expect = 2.810e-6
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    7 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFGHEY 258
            I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+          ++P  + +LLS+ K +D G EY
Sbjct:  414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKA--------LYMPEFTSNLLSV-KRSDNGGEY 487
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 53.5 bits (127), Expect = 5.010e-6
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    7 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 309
            I D+GA+ HM  D   + + ++  G V +A+G+R+PIEGVG L L F  DS+   M        P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL-FDKDSDAFYM--------PQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A8K0CU43_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CU43_9COLE)

HSP 1 Score: 53.1 bits (126), Expect = 6.450e-6
Identity = 28/103 (27.18%), Postives = 49/103 (47.57%), Query Frame = 1 
Query:    4 WICDNGATKHMTHDSDFLFNYQECDG--HVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFGHEYRCSREGLRINLKTGRV 306
            WICD+GA+ HMT   ++    +  D   HV++A+   +  +G G++ +Q   D +     +  V +IP LS  L S+G   D    +   +       + G+V
Sbjct:  104 WICDSGASMHMTCHKEWFPKLERLDEPIHVKIANDKVIAAKGSGIIEIQALTDDQWQNRTMYNVLYIPELSQCLFSVGVMTDRNFTHHSYKNRCEFRNRNGKV 206
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A8K0D5T6_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0D5T6_9COLE)

HSP 1 Score: 53.1 bits (126), Expect = 7.090e-6
Identity = 28/103 (27.18%), Postives = 49/103 (47.57%), Query Frame = 1 
Query:    4 WICDNGATKHMTHDSDFLFNYQECDG--HVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFGHEYRCSREGLRINLKTGRV 306
            WICD+GA+ HMT   ++    +  D   HV++A+   +  +G G++ +Q   D +     +  V +IP LS  L S+G   D    +   +       + G+V
Sbjct:  232 WICDSGASMHMTCHKEWFPKLERLDEPIHVKIANDKVIAAKGSGIIEIQALTDDQWQNRTMYNVLYIPELSQCLFSVGVMTDRNFTHHSYKNRCEFRNRNGKV 334
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-5
Identity = 30/83 (36.14%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    4 WICDNGATKHMTHDSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFG 249
            WI D+G   HMTH+ DFL N+Q+ D   V L D +   ++G G +  Q      +  M LT V ++P L  +L+SL +    G
Sbjct:   68 WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNELDKSG 147
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BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Match: A0A4Y2HR51_ARAVE (Uncharacterized protein n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HR51_ARAVE)

HSP 1 Score: 51.2 bits (121), Expect = 1.130e-5
Identity = 35/108 (32.41%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:    4 WICDNGATKHMTHDSDFLFNYQ--ECDGHVRLADGNRLPIEGVGMLFLQFRVDSEVDLMKLTQVAFIPLLSYHLLSL---------GKFADFGHEYRCSREGLRINLK 294
            W  DNGA+ H+T+DS++  N++  E    V  A+G  LP  G G L +  +V  E    +L ++  +P +S +L S           KF     E  C   GL+IN K
Sbjct:   20 WFVDNGASTHITNDSNYFSNFEVFESPHGVTAANGKILPAIGKGTLKIMTKVKGEKQFKELKEIWLVPGISKNLFSTLTTHVNNKNTKFESIAEE--C---GLKINNK 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55727.13079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME1.830e-838.46Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A5D3DBV2_CUCME2.750e-630.21Retrovirus-related Pol polyprotein from transposon... [more]
UPI000BBEF31C2.750e-639.29uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B2.800e-639.29uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC902.810e-639.29uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
A0A8D9D973_BRACM5.010e-635.92(field mustard) hypothetical protein (Fragment) n=... [more]
A0A8K0CU43_9COLE6.450e-627.18Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A8K0D5T6_9COLE7.090e-627.18Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A5A7U112_CUCME1.110e-536.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HR51_ARAVE1.130e-532.41Uncharacterized protein n=2 Tax=Araneus ventricosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55727contigH-paniculata_contig55727:328..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog67593.Physo138912
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.0617769-CDS-H-paniculata_contig55727:327..6391622930588.0617769-CDS-H-paniculata_contig55727:327..639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55727 328..639 +
1691481360.8846364-CDS-H-paniculata_contig55727:327..6391691481360.8846364-CDS-H-paniculata_contig55727:327..639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55727 328..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55727.13079.1prot_H-paniculata_contig55727.13079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55727 328..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55727.13079.1

>prot_H-paniculata_contig55727.13079.1 ID=prot_H-paniculata_contig55727.13079.1|Name=mRNA_H-paniculata_contig55727.13079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
IWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFR
VDSEVDLMKLTQVAFIPLLSYHLLSLGKFADFGHEYRCSREGLRINLKTG
RVLS
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mRNA from alignment at H-paniculata_contig55727:328..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55727.13079.1 ID=mRNA_H-paniculata_contig55727.13079.1|Name=mRNA_H-paniculata_contig55727.13079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig55727:328..639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGA
TTTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAGATG
GTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGA
GTTGACTCCGAGGTTGATTTGATGAAGTTAACTCAGGTTGCGTTCATACC
ACTTCTCAGTTATCACCTTCTATCTCTAGGGAAATTCGCGGACTTTGGTC
ATGAATATAGGTGTTCACGCGAAGGGCTCAGAATTAACCTTAAAACAGGG
AGAGTTCTGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig55727:328..639+

>mRNA_H-paniculata_contig55727.13079.1 ID=mRNA_H-paniculata_contig55727.13079.1|Name=mRNA_H-paniculata_contig55727.13079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig55727:328..639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGA
TTTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAGATG
GTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGA
GTTGACTCCGAGGTTGATTTGATGAAGTTAACTCAGGTTGCGTTCATACC
ACTTCTCAGTTATCACCTTCTATCTCTAGGGAAATTCGCGGACTTTGGTC
ATGAATATAGGTGTTCACGCGAAGGGCTCAGAATTAACCTTAAAACAGGG
AGAGTTCTGAGTATCTGGATTTGTGATAATGGTGCAACGAAACACATGAC
CCATGATTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGGCATGTAC
GCCTTGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTC
CTTCAATTTCGAGTTGACTCCGAGGTTGATTTGATGAAGTTAACTCAGGT
TGCGTTCATACCACTTCTCAGTTATCACCTTCTATCTCTAGGGAAATTCG
CGGACTTTGGTCATGAATATAGGTGTTCACGCGAAGGGCTCAGAATTAAC
CTTAAAACAGGGAGAGTTCTGAGT
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