mRNA_H-paniculata_contig557.13075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: D7FW98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW98_ECTSI) HSP 1 Score: 168 bits (426), Expect = 4.420e-44 Identity = 122/207 (58.94%), Postives = 139/207 (67.15%), Query Frame = 1
Query: 202 MVWNRRKQEWMEV----EAGAEPAVVSPTANL-LSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFGDDSVIHSTPSKKSAASPTA-------LVPTPTQPTTPESLEEPE-GPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAV------VSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 765
MVWNRRKQ+W+EV E+ ++ A SPT++ LSSNAYASGVNQNAGN LT+K ITR+HAPPGG S+ISFGD H+ P+ +A T ++ TPTQPTTPES E E GPAPIPMME XXXXXXXXXX VS+NAYA+GSNQNSGNFMTGRPTTRVRAPPGGASSITFG
Sbjct: 1 MVWNRRKQQWIEVDVTEESPSKAAAASPTSSTALSSNAYASGVNQNAGNFLTDKPITRIHAPPGGASSISFGDQ---HTGPTAAAAGVTTKTQDQQGLVLGTPTQPTTPESAESTEEGPAPIPMMELPPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSNAYASGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 204
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A7S2RVM1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVM1_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.460e-21 Identity = 74/160 (46.25%), Postives = 86/160 (53.75%), Query Frame = 1
Query: 286 LSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFGDDSVIHSTPSKKSAASPTALVPTPTQPTTPESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVVSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 765
+SSNAYASG NQNAGN LT++ TRVHAPPGG S+ FG D V K S +P P P ++ PAP G +V+PP VS+NAYATGSNQN GNF+T RPTTRV APPGG S+ITFG
Sbjct: 108 VSSNAYASGSNQNAGNVLTDRPTTRVHAPPGGSSSNIFGTDPVQEP---KASWVAPPQQQPVEPTPIVDKTNVVHTAPAP--------------------GTKKVEPPVDSR---------VSSNAYATGSNQNCGNFITERPTTRVHAPPGGVSNITFG 235
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A2V0PID5_9CHLO (SAP domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PID5_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 9.250e-12 Identity = 67/181 (37.02%), Postives = 80/181 (44.20%), Query Frame = 1
Query: 235 EVEAGAEPAVVSPTANLLSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFGDDSVIHSTPSKKSAASPTALVPTPTQPTTP----ESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVVSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 765
E+ AG A V A+ + N YA QN GN L+++ +RV APPGG+S+ FGD S A P A+ P P P ESL + PAP V PPA P A A N Y QN+GNF+T R RV APPGGASSI FG
Sbjct: 64 EMVAGTSNADV---AHGYAVNNYARPEGQNVGNHLSDRNSSRVLAPPGGKSSFIFGDAST---------ATPPPAMSPAPAAPPRTAEYAESLYHAQSPAPY----------------------AVGPPAPPPGSLAAGADAKPNNNYERAGGQNTGNFLTSRKMVRVAAPPGGASSIVFG 210
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A7S2F4N6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2F4N6_9DINO) HSP 1 Score: 74.3 bits (181), Expect = 1.840e-11 Identity = 62/174 (35.63%), Postives = 83/174 (47.70%), Query Frame = 1
Query: 244 AGAEPAVVSPTANLLSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFGDDSVIHSTPSKKSAASPTALVPTPTQPTTPESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVVSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 765
A A V +P+AN +ASG NQNAGN LTE+ TR+H PGG S++ G D V P+K +A +S E + P + G +KPP+ A A A SAN +A+G+NQN+GN +T R TTR+ PGG SS+ G
Sbjct: 16 AAAGVGVAAPSANR-----FASGANQNAGNVLTERSTTRLHQAPGGNSSLCLGGD-VEKPAPAKAAAR---------------QSDENLDASNTAPAQQ---------------GNDTIKPPSS-GAAAGVGVAAPSANRFASGANQNAGNVLTERSTTRLHQAPGGNSSLCLG 152
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A7S0NNN3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NNN3_MICPS) HSP 1 Score: 75.1 bits (183), Expect = 7.440e-11 Identity = 59/168 (35.12%), Postives = 81/168 (48.21%), Query Frame = 1
Query: 289 SSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFG---DDSVIHS--TPSKKSAASPTALVPTPTQPTTPESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVV-SANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG*SD 774
SSNA+A+G +QN GN +T++ TR+HAPPGG S+I FG +D V + T K+ SP+A+ + AP+ A S+NA+A G++QN GNF+T RPTTR+ APPGG S I+FG D
Sbjct: 13 SSNAFANGSDQNCGNVITDRPTTRLHAPPGGHSSICFGAAPEDRVRSTVATAQDKATNSPSAVQ--------------------------------------------------SQVFGAPSTARSNSSNAFANGADQNCGNFITDRPTTRLHAPPGGQSQISFGGGD 130
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A7R9TMZ4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TMZ4_9VIRI) HSP 1 Score: 70.9 bits (172), Expect = 3.160e-10 Identity = 58/163 (35.58%), Postives = 77/163 (47.24%), Query Frame = 1
Query: 277 ANLLSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFGDDSVIHSTPSKKSAASPTALVPTPTQPTTPESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVVSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 765
A SSNAYA+G +QN GN +T++ +RV PGG S+ISFGD++ + +PT P P + S E PAP + A S+NAYA G++QN GNF+T R T+RV PGG SSI+FG
Sbjct: 7 ARANSSNAYANGADQNCGNFITDRTTSRVLKAPGGGSSISFGDEAPA----GQLQQQAPTRRGP----PASQISFGYDEAPAPARAAQPEQATYGMRSD----------------------ARANSSNAYANGADQNCGNFITDRTTSRVLKAPGGGSSISFG 139
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: C1FHE0_MICCC (SAP domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHE0_MICCC) HSP 1 Score: 72.0 bits (175), Expect = 2.300e-9 Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 1
Query: 289 SSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFG---DDSVIHS--TPSKKSAASPTALVPTPTQPTTPESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVVSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG*SD 774
SSNA+A+G +QN GN +T++ TR+HAPPGG S+I FG +D V + T K+ SP+A+ A S+NA+A G++QN GNF+T RPTTR+ APPGG S I+FG D
Sbjct: 13 SSNAFANGSDQNCGNVITDRPTTRLHAPPGGHSSICFGAAPEDRVRSTVATAQDKATNSPSAVX-------------------------------------------------XXXXXXXXXARSNSSNAFANGADQNCGNFITDRPTTRLHAPPGGQSQISFGGGD 130
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A812UW40_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW40_9DINO) HSP 1 Score: 65.9 bits (159), Expect = 2.810e-8 Identity = 54/159 (33.96%), Postives = 78/159 (49.06%), Query Frame = 1
Query: 286 LSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFGDDSVIHSTPSKKSAASPTALVPTPTQPTTPESLEEPEGPAPIPMMEXXXXXXXXXXXXXXXGVGEVKPPAVPEAVAAPAAAVVSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITF 762
++SN+YA+G NQN GN +++ TRV APPGG+S+I G D + AA P +P ++ PA G + PE +A S+N+YA+G++QN+GN +TG PTTRV PPGGAS ++
Sbjct: 17 VTSNSYANGSNQNCGNVISDIPSTRVAAPPGGKSSICLGWDD--------RPAARPAG------RPPAEDASRAQARPA---------------------GEALRRDHRSPEDLAYGTRPRESSNSYASGNSQNTGNVLTGVPTTRVLRPPGGASEMSL 140
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A5D6XR02_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR02_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 4.010e-8 Identity = 28/39 (71.79%), Postives = 37/39 (94.87%), Query Frame = 1
Query: 286 LSSNAYASGVNQNAGNSLTEKQITRVHAPPGGRSTISFG 402
+SSN+YA+G NQNAGN LTE++ITR+HAPPGG+S+I+FG
Sbjct: 149 MSSNSYATGTNQNAGNMLTERRITRIHAPPGGKSSITFG 187
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Match: A0A2R5GBR3_9STRA (Protein SPIRAL1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBR3_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 9.540e-8 Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 649 VSANAYATGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 765
VS+NA+A+GSN N+GNF+T RPTTRV APPGG S ITFG
Sbjct: 104 VSSNAFASGSNMNAGNFITDRPTTRVHAPPGGRSQITFG 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig557.13075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig557.13075.1 >prot_H-paniculata_contig557.13075.1 ID=prot_H-paniculata_contig557.13075.1|Name=mRNA_H-paniculata_contig557.13075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp MSRSHVSNTTLSLGSTGAPATPQGKKMVWNRRKQEWMEVEAGAEPAVVSPback to top mRNA from alignment at H-paniculata_contig557:19544..23008- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig557.13075.1 ID=mRNA_H-paniculata_contig557.13075.1|Name=mRNA_H-paniculata_contig557.13075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3465bp|location=Sequence derived from alignment at H-paniculata_contig557:19544..23008- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig557:19544..23008- >mRNA_H-paniculata_contig557.13075.1 ID=mRNA_H-paniculata_contig557.13075.1|Name=mRNA_H-paniculata_contig557.13075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig557:19544..23008- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |