mRNA_H-paniculata_contig557.13074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig557.13074.1
Unique NamemRNA_H-paniculata_contig557.13074.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig557.13074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig557contigH-paniculata_contig557:18701..19521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size821
Cds size543
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930587.1221583-UTR-H-paniculata_contig557:18700..189781622930587.1221583-UTR-H-paniculata_contig557:18700..18978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig557 18701..18978 +
1691481360.487173-UTR-H-paniculata_contig557:18700..189781691481360.487173-UTR-H-paniculata_contig557:18700..18978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig557 18701..18978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930587.136912-CDS-H-paniculata_contig557:18978..195211622930587.136912-CDS-H-paniculata_contig557:18978..19521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig557 18979..19521 +
1691481360.497688-CDS-H-paniculata_contig557:18978..195211691481360.497688-CDS-H-paniculata_contig557:18978..19521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig557 18979..19521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig557.13074.1prot_H-paniculata_contig557.13074.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig557 18979..19521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig557.13074.1

>prot_H-paniculata_contig557.13074.1 ID=prot_H-paniculata_contig557.13074.1|Name=mRNA_H-paniculata_contig557.13074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MKQTATIKFTSLRFNAQVTRQSHTQQTSHLGVCTRCALPLKTRKRSARPP
PQSPPAPVEPAAPETTHGTSYPAAQGHRTMFSPPDSKTINVPATLAFPAG
ACQKVFLSPHSPPHVVVCYRNSNIDCAHLHTPVKSVLSPHWHVPDECVSK
RKHTEIVQFNSVNMSLLYVGTIHKLALISTQ
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mRNA from alignment at H-paniculata_contig557:18701..19521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig557.13074.1 ID=mRNA_H-paniculata_contig557.13074.1|Name=mRNA_H-paniculata_contig557.13074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at H-paniculata_contig557:18701..19521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATGCTGAAAAAATATCTTGCACGGTAGTTTACTGGGCAAAGCCCTCTG
TTTTTGGTGTTTGAGTAAGACAGGGTTGCTTCTGTCTAAAGGTACATCGC
ATCATTTTCAGGACTTCTCTGCCATTGTTCACTTGAGGGGGTAAAGGGGC
GGGGGCAGGGCAGGACTTGAGTCCCCATCCTCCACACATGACAGGTGTCA
ACTAGATAACACTATCCCTCTCTCGGACATCTTCCCTCCACCGGTCATTT
TACAGAAAGAGATGTAATACAGTATGACATGAAACAAACGGCCACGATTA
AGTTCACTTCTCTTCGATTCAACGCACAGGTAACACGCCAAAGTCACACA
CAACAAACATCACATTTGGGGGTATGTACCCGCTGCGCTCTTCCCCTCAA
AACAAGAAAGCGCTCCGCCCGTCCTCCCCCCCAATCTCCCCCTGCGCCCG
TCGAGCCGGCAGCACCCGAAACTACCCACGGAACGTCCTACCCTGCAGCC
CAAGGACATCGAACAATGTTTTCTCCGCCCGACAGCAAGACAATCAATGT
GCCTGCTACACTGGCATTTCCTGCGGGTGCCTGCCAGAAAGTATTTCTTT
CTCCCCATTCTCCCCCTCATGTTGTGGTCTGTTATCGTAATTCAAATATA
GATTGCGCACATCTACACACCCCAGTCAAGTCAGTGCTCAGCCCTCACTG
GCACGTCCCCGATGAGTGCGTTTCCAAACGGAAACATACAGAAATCGTCC
AATTCAATTCAGTGAATATGTCGTTACTGTACGTTGGAACTATACATAAA
TTGGCTCTTATTTCAACGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig557:18701..19521+

>mRNA_H-paniculata_contig557.13074.1 ID=mRNA_H-paniculata_contig557.13074.1|Name=mRNA_H-paniculata_contig557.13074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig557:18701..19521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAAACGGCCACGATTAAGTTCACTTCTCTTCGATTCAACGCACA
GGTAACACGCCAAAGTCACACACAACAAACATCACATTTGGGGGTATGTA
CCCGCTGCGCTCTTCCCCTCAAAACAAGAAAGCGCTCCGCCCGTCCTCCC
CCCCAATCTCCCCCTGCGCCCGTCGAGCCGGCAGCACCCGAAACTACCCA
CGGAACGTCCTACCCTGCAGCCCAAGGACATCGAACAATGTTTTCTCCGC
CCGACAGCAAGACAATCAATGTGCCTGCTACACTGGCATTTCCTGCGGGT
GCCTGCCAGAAAGTATTTCTTTCTCCCCATTCTCCCCCTCATGTTGTGGT
CTGTTATCGTAATTCAAATATAGATTGCGCACATCTACACACCCCAGTCA
AGTCAGTGCTCAGCCCTCACTGGCACGTCCCCGATGAGTGCGTTTCCAAA
CGGAAACATACAGAAATCGTCCAATTCAATTCAGTGAATATGTCGTTACT
GTACGTTGGAACTATACATAAATTGGCTCTTATTTCAACGCAAATGAAAC
AAACGGCCACGATTAAGTTCACTTCTCTTCGATTCAACGCACAGGTAACA
CGCCAAAGTCACACACAACAAACATCACATTTGGGGGTATGTACCCGCTG
CGCTCTTCCCCTCAAAACAAGAAAGCGCTCCGCCCGTCCTCCCCCCCAAT
CTCCCCCTGCGCCCGTCGAGCCGGCAGCACCCGAAACTACCCACGGAACG
TCCTACCCTGCAGCCCAAGGACATCGAACAATGTTTTCTCCGCCCGACAG
CAAGACAATCAATGTGCCTGCTACACTGGCATTTCCTGCGGGTGCCTGCC
AGAAAGTATTTCTTTCTCCCCATTCTCCCCCTCATGTTGTGGTCTGTTAT
CGTAATTCAAATATAGATTGCGCACATCTACACACCCCAGTCAAGTCAGT
GCTCAGCCCTCACTGGCACGTCCCCGATGAGTGCGTTTCCAAACGGAAAC
ATACAGAAATCGTCCAATTCAATTCAGTGAATATGTCGTTACTGTACGTT
GGAACTATACATAAATTGGCTCTTATTTCAACGCAA
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