mRNA_H-paniculata_contig55647.13067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55647.13067.1
Unique NamemRNA_H-paniculata_contig55647.13067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55647.13067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55647contigH-paniculata_contig55647:314..913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55647.13067.1prot_H-paniculata_contig55647.13067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55647 339..913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.6085038-UTR-H-paniculata_contig55647:313..3381622930586.6085038-UTR-H-paniculata_contig55647:313..338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55647 314..338 +
1691481360.2363222-UTR-H-paniculata_contig55647:313..3381691481360.2363222-UTR-H-paniculata_contig55647:313..338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55647 314..338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.6234653-CDS-H-paniculata_contig55647:338..4771622930586.6234653-CDS-H-paniculata_contig55647:338..477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55647 339..477 +
1691481360.2446654-CDS-H-paniculata_contig55647:338..4771691481360.2446654-CDS-H-paniculata_contig55647:338..477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55647 339..477 +
1622930586.6357052-CDS-H-paniculata_contig55647:704..9131622930586.6357052-CDS-H-paniculata_contig55647:704..913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55647 705..913 +
1691481360.252433-CDS-H-paniculata_contig55647:704..9131691481360.252433-CDS-H-paniculata_contig55647:704..913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55647 705..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55647.13067.1

>prot_H-paniculata_contig55647.13067.1 ID=prot_H-paniculata_contig55647.13067.1|Name=mRNA_H-paniculata_contig55647.13067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MEVMKSWPKLMDTPDNPRKAIDSNTIAKHLLCLKASDARIREALQYSPQG
ISYDEAVVDNDNAYEFSRRMGRWRSVGIYPRGCKIYLETMRTLTAETHRM
VVGEGQGVEKVQGAVQ
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mRNA from alignment at H-paniculata_contig55647:314..913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55647.13067.1 ID=mRNA_H-paniculata_contig55647.13067.1|Name=mRNA_H-paniculata_contig55647.13067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig55647:314..913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCGGCAAGTACTCGCCAGGCCACATGGAGGTTATGAAGTCGTGGCCGA
AGCTGATGGACACGCCTGATAACCCCCGCAAGGCCATCGACAGCAATACC
ATCGCAAAGCACTTACTGTGCCTTAAGGCTTCCGACGCGCGCATCAGGGA
AGCACTACAATACAATAAGTTCTGCTCTTGGTAGGTGGCATTCCCAGTAA
CCAGCTCGTCCATTATTCCTGGCAGGAAATTCTGTCGAGATTGGATTTCA
AAGTTACTGTAAATATATCTATTTCTACCTACGTTTTGGTGCGCAAAAGT
ATTTTAGTGTTTGGTTCTTTGTTTCCTGTTCGTGAAGGAATTGTTTTCGG
ATGTTATACCCAGTCTCGATTCGTATTATGTTGCGCGGCAGGTCCCCAAG
GCATCTCGTACGATGAAGCCGTCGTGGACAACGACAACGCGTACGAATTC
TCGAGGAGGATGGGCCGTTGGCGTTCCGTTGGGATTTACCCGAGGGGATG
TAAGATCTATCTGGAGACGATGAGGACGCTGACAGCGGAAACCCACCGCA
TGGTGGTGGGGGAGGGGCAGGGGGTGGAGAAGGTGCAGGGGGCGGTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig55647:314..913+

>mRNA_H-paniculata_contig55647.13067.1 ID=mRNA_H-paniculata_contig55647.13067.1|Name=mRNA_H-paniculata_contig55647.13067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig55647:314..913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTTATGAAGTCGTGGCCGAAGCTGATGGACACGCCTGATAACCC
CCGCAAGGCCATCGACAGCAATACCATCGCAAAGCACTTACTGTGCCTTA
AGGCTTCCGACGCGCGCATCAGGGAAGCACTACAATACAATGGAGGTTAT
GAAGTCGTGGCCGAAGCTGATGGACACGCCTGATAACCCCCGCAAGGCCA
TCGACAGCAATACCATCGCAAAGCACTTACTGTGCCTTAAGGCTTCCGAC
GCGCGCATCAGGGAAGCACTACAATACAGTCCCCAAGGCATCTCGTACGA
TGAAGCCGTCGTGGACAACGACAACGCGTACGAATTCTCGAGGAGGATGG
GCCGTTGGCGTTCCGTTGGGATTTACCCGAGGGGATGTAAGATCTATCTG
GAGACGATGAGGACGCTGACAGCGGAAACCCACCGCATGGTGGTGGGGGA
GGGGCAGGGGGTGGAGAAGGTGCAGGGGGCGGTGCAGGTCCCCAAGGCAT
CTCGTACGATGAAGCCGTCGTGGACAACGACAACGCGTACGAATTCTCGA
GGAGGATGGGCCGTTGGCGTTCCGTTGGGATTTACCCGAGGGGATGTAAG
ATCTATCTGGAGACGATGAGGACGCTGACAGCGGAAACCCACCGCATGGT
GGTGGGGGAGGGGCAGGGGGTGGAGAAGGTGCAGGGGGCGGTGCAG
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