mRNA_H-paniculata_contig55642.13066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55642.13066.1
Unique NamemRNA_H-paniculata_contig55642.13066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55642.13066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55642contigH-paniculata_contig55642:538..1054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55642.13066.1prot_H-paniculata_contig55642.13066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55642 683..1051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.5424576-UTR-H-paniculata_contig55642:537..6821622930586.5424576-UTR-H-paniculata_contig55642:537..682Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55642 538..682 +
1691481360.2052994-UTR-H-paniculata_contig55642:537..6821691481360.2052994-UTR-H-paniculata_contig55642:537..682Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55642 538..682 +
1622930586.5712996-UTR-H-paniculata_contig55642:1051..10541622930586.5712996-UTR-H-paniculata_contig55642:1051..1054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55642 1052..1054 +
1691481360.2249203-UTR-H-paniculata_contig55642:1051..10541691481360.2249203-UTR-H-paniculata_contig55642:1051..1054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55642 1052..1054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.5591493-CDS-H-paniculata_contig55642:682..10511622930586.5591493-CDS-H-paniculata_contig55642:682..1051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55642 683..1051 +
1691481360.2172236-CDS-H-paniculata_contig55642:682..10511691481360.2172236-CDS-H-paniculata_contig55642:682..1051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55642 683..1051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55642.13066.1

>prot_H-paniculata_contig55642.13066.1 ID=prot_H-paniculata_contig55642.13066.1|Name=mRNA_H-paniculata_contig55642.13066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MCFSAFWYDPRVRVVHFMRETIPMPYTFQLCLTCLRTPVLACVSDFWVVG
DMPQFALRLFVADAGILNLRFFKVIDFLVEAMTESPCCWNWHPDFLDDIR
VCSRWLDGWSPTTGGSLYSCCW*
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mRNA from alignment at H-paniculata_contig55642:538..1054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55642.13066.1 ID=mRNA_H-paniculata_contig55642.13066.1|Name=mRNA_H-paniculata_contig55642.13066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at H-paniculata_contig55642:538..1054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTTTTGCGTCTGACGCCTGACGCCCGAGCGGCGTAGTTTTCGGTATT
TCTGATTTGCGTTTGCACAATCAACGCCCGAACGGCGAGCGTTTTCCCAT
GTTTCTGACTAACGCCCAGCCGTGTGGTACCTTTCCGATTGGTGGATGTG
TTTTTCTGCTTTCTGGTATGATCCACGCGTGCGTGTGGTGCATTTCATGC
GTGAAACAATTCCTATGCCTTACACGTTTCAGCTATGTTTGACCTGTCTG
AGAACGCCTGTTTTGGCGTGTGTTTCCGATTTCTGGGTTGTTGGGGACAT
GCCCCAATTCGCTCTGCGCCTGTTTGTCGCTGACGCTGGAATTTTAAATT
TGCGATTTTTTAAAGTAATTGACTTTCTGGTGGAGGCGATGACTGAGTCA
CCCTGTTGTTGGAATTGGCATCCGGATTTTCTTGACGATATTCGTGTGTG
TTCACGTTGGCTTGACGGATGGAGTCCGACTACTGGTGGAAGTTTATACA
GCTGCTGCTGGTGATCG
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Coding sequence (CDS) from alignment at H-paniculata_contig55642:538..1054+

>mRNA_H-paniculata_contig55642.13066.1 ID=mRNA_H-paniculata_contig55642.13066.1|Name=mRNA_H-paniculata_contig55642.13066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig55642:538..1054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTTTCTGCTTTCTGGTATGATCCACGCGTGCGTGTGGTGCATTT
CATGCGTGAAACAATTCCTATGCCTTACACGTTTCAGCTATGTTTGACCT
GTCTGAGAACGCCTGTTTTGGCGTGTGTTTCCGATTTCTGGGTTGTTGGG
GACATGCCCCAATTCGCTCTGCGCCTGTTTGTCGCTGACGCTGGAATTTT
AAATTTGCGATTTTTTAAAGTAATTGACTTTCTGGTGGAGGCGATGACTG
AGTCACCCTGTTGTTGGAATTGGCATCCGGATTTTCTTGACGATATTCGT
GTGTGTTCACGTTGGCTTGACGGATGGAGTCCGACTACTGGTGGAAGTTT
ATACAGCTGCTGCTGGTGAATGTGTTTTTCTGCTTTCTGGTATGATCCAC
GCGTGCGTGTGGTGCATTTCATGCGTGAAACAATTCCTATGCCTTACACG
TTTCAGCTATGTTTGACCTGTCTGAGAACGCCTGTTTTGGCGTGTGTTTC
CGATTTCTGGGTTGTTGGGGACATGCCCCAATTCGCTCTGCGCCTGTTTG
TCGCTGACGCTGGAATTTTAAATTTGCGATTTTTTAAAGTAATTGACTTT
CTGGTGGAGGCGATGACTGAGTCACCCTGTTGTTGGAATTGGCATCCGGA
TTTTCTTGACGATATTCGTGTGTGTTCACGTTGGCTTGACGGATGGAGTC
CGACTACTGGTGGAAGTTTATACAGCTGCTGCTGGTGA
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