mRNA_H-paniculata_contig5564.13064.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5564.13064.1
Unique NamemRNA_H-paniculata_contig5564.13064.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5564.13064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5564contigH-paniculata_contig5564:3778..4102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.2752075-CDS-H-paniculata_contig5564:3777..41011622930586.2752075-CDS-H-paniculata_contig5564:3777..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5564 3778..4101 +
1691481360.0662987-CDS-H-paniculata_contig5564:3777..41011691481360.0662987-CDS-H-paniculata_contig5564:3777..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5564 3778..4101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5564.13064.1prot_H-paniculata_contig5564.13064.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5564 3778..4101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5564.13064.1

>prot_H-paniculata_contig5564.13064.1 ID=prot_H-paniculata_contig5564.13064.1|Name=mRNA_H-paniculata_contig5564.13064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
CVVGFRTLSPVQTANYRPHAHVRYSLSPSFGLVPMLLSVVSKSCPRPCTT
RLSGCICVHYRYICSCAFRLVHIVSPKATVQHSAVLTFEVQTLLILVLIV
SPKATVQH
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mRNA from alignment at H-paniculata_contig5564:3778..4102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5564.13064.1 ID=mRNA_H-paniculata_contig5564.13064.1|Name=mRNA_H-paniculata_contig5564.13064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=325bp|location=Sequence derived from alignment at H-paniculata_contig5564:3778..4102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTGTGGGGTTTAGAACCTTGTCTCCAGTACAGACAGCGAACTACAG
ACCACATGCACATGTACGCTACTCTCTCTCACCCTCTTTTGGACTCGTGC
CTATGCTGCTGTCGGTTGTCAGTAAATCATGTCCTCGTCCATGTACGACA
CGTTTGAGTGGCTGCATATGTGTTCATTATAGGTATATTTGTTCATGCGC
TTTTCGCCTTGTACACATTGTGTCACCCAAAGCCACAGTACAGCATAGTG
CAGTACTTACATTTGAGGTACAGACTTTATTAATCCTTGTACTCATCGTG
TCACCCAAAGCCACAGTACAGCATA
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Coding sequence (CDS) from alignment at H-paniculata_contig5564:3778..4102+

>mRNA_H-paniculata_contig5564.13064.1 ID=mRNA_H-paniculata_contig5564.13064.1|Name=mRNA_H-paniculata_contig5564.13064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig5564:3778..4102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTGTGGGGTTTAGAACCTTGTCTCCAGTACAGACAGCGAACTACAG
ACCACATGCACATGTACGCTACTCTCTCTCACCCTCTTTTGGACTCGTGC
CTATGCTGCTGTCGGTTGTCAGTAAATCATGTCCTCGTCCATGTACGACA
CGTTTGAGTGGCTGCATATGTGTTCATTATAGGTATATTTGTTCATGCGC
TTTTCGCCTTGTACACATTGTGTCACCCAAAGCCACAGTACAGCATAGTG
CAGTACTTACATTTGAGGTACAGACTTTATTAATCCTTGTACTCATCGTG
TCACCCAAAGCCACAGTACAGCATTGTGTTGTGGGGTTTAGAACCTTGTC
TCCAGTACAGACAGCGAACTACAGACCACATGCACATGTACGCTACTCTC
TCTCACCCTCTTTTGGACTCGTGCCTATGCTGCTGTCGGTTGTCAGTAAA
TCATGTCCTCGTCCATGTACGACACGTTTGAGTGGCTGCATATGTGTTCA
TTATAGGTATATTTGTTCATGCGCTTTTCGCCTTGTACACATTGTGTCAC
CCAAAGCCACAGTACAGCATAGTGCAGTACTTACATTTGAGGTACAGACT
TTATTAATCCTTGTACTCATCGTGTCACCCAAAGCCACAGTACAGCAT
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