mRNA_H-paniculata_contig556.13062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig556.13062.1
Unique NamemRNA_H-paniculata_contig556.13062.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 8.130e-44
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPAT 312
            T+RPLVYISR+T  NE NWDV+ LEC ALVWAI+KLRV+LYGI F+AFTDHQPLL++IS+ EKKP+VQRMCD LS + F L Y+ GK NQ+ADALSRLP P T
Sbjct:  399 TVRPLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQRMCDFLSAYSFTLSYRKGKENQVADALSRLPQPPT 501
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5KJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.800e-42
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPAT 312
            T+RPLVYISR+T  NE NWDV+ LEC ALVWAI+KLRV+LYGI F+AFTDHQPLL++IS+ EKKP+VQ MCD L+ + F L Y+ GK NQ+ADALSRLP P T
Sbjct:  250 TVRPLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQHMCDFLTAYSFTLSYRKGKDNQVADALSRLPQPPT 352
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5KPU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPU9_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.490e-38
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPAT 312
            T+RPLVY+SR+T  NE NWD TDLE  ALVWA+KKLRV+LYGI F   TDHQPL +Y+SLSEKK +V RMCD LS +QF+LRYK G  NQ AD L RLP  AT
Sbjct:  106 TMRPLVYVSRSTLPNECNWDTTDLEMGALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKLRVHRMCDFLSSYQFSLRYKKGNDNQAADMLFRLPQSAT 208
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5KKY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 9.740e-38
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPAT 312
            T+RPLVY+SR+T  NE+NWD  DL   AL W +KKLRV+ YGI F   TDHQPL  Y+SLSEKKP+V  MCD LS +QF+LRYK G  NQ+AD LSRLP PAT
Sbjct: 1308 TMRPLVYVSRSTLPNERNWDTADLGMGALFWVVKKLRVYSYGIPFVVHTDHQPLTAYLSLSEKKPRVHGMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPAT 1410
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.950e-32
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQL 276
            T+ PLVY+SR+T  NE NWDV+ LEC ALVWAI+KLR  LYGI F+AFTDH+PLL++ S+ EKKP+VQRM D LS + F L Y+ GK N++
Sbjct:  371 TVSPLVYVSRSTLPNEANWDVSSLECGALVWAIRKLRDCLYGIPFEAFTDHKPLLSFFSMGEKKPRVQRMGDFLSAYSFTLSYRKGKDNRM 461
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.200e-30
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVP 306
            T+RPL Y+SR+T  NE+ W  T+LEC A+VWAIKK R   YGI F  ++DHQPL N  SL+EK  +VQR  D LS + + L Y+PGK N  AD +SRLP+P
Sbjct:  304 TVRPLCYLSRSTYPNERRWSATELECGAIVWAIKKNRTLFYGIPFQIYSDHQPLRNLESLAEKNNRVQRWFDFLSAYTYELIYRPGKANGNADCMSRLPLP 404
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5KXJ0_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.790e-24
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPA 309
            ++RP+VYISR T   E+NW V DLE   +VWAIK+LR +L+  KF  ++DH+ L +   + E   +VQR  + LS F + L+Y+ G  N  AD LSR+P+PA
Sbjct:   36 SVRPIVYISRATLPAERNWTVLDLEAGGIVWAIKRLRGYLWSTKFVIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRMPLPA 137
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5L1K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.440e-24
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVP 306
            ++RP+V+ISR+T + E+NW   DLE  A+VWAIK+LR +L G  F  +TD+Q L N   + +  P+VQR  + L+ +Q+ L+++PG  N  AD LSRLP+P
Sbjct:  558 SVRPIVFISRSTLDAERNWTPLDLEAGAIVWAIKRLRRYLRGTHFQIWTDNQALENISKVGDHSPRVQRWLESLTAYQYTLKHRPGSSNSNADMLSRLPIP 658
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BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5JPT7_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.550e-23
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPA 309
            ++RP+VYISR T   E+NW V DLE   +VWAIK+LR +L+  KF  ++DH+ L +   + E   +VQR  + LS F + L+Y+ G  N  AD LSRLP+PA
Sbjct:  161 SVRPIVYISRATLPAERNWTVLDLEAGGIVWAIKRLRGYLWSTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRQGSANGNADFLSRLPLPA 262
[Close]
BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Match: A0A6H5K764_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K764_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.750e-23
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    4 TLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPA 309
            ++RP+VYISRTT   E+NW V DLE   +VWAIK+LR +L+  KF  ++DH+ L +   + E   +VQR  + LS F + L+Y+ G  N  AD LSRLP+PA
Sbjct:  140 SVRPIVYISRTTLPAERNWTVLDLEAGGIVWAIKRLRGYLWSTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPA 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig556.13062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L269_9PHAE8.130e-4471.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH5_9PHAE1.800e-4269.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPU9_9PHAE1.490e-3867.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY6_9PHAE9.740e-3865.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8H1_9PHAE3.950e-3262.64RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KRW3_9PHAE3.200e-3055.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KXJ0_9PHAE2.790e-2446.08RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1K5_9PHAE5.440e-2446.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPT7_9PHAE1.550e-2347.06RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5K764_9PHAE1.750e-2348.04RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig556contigH-paniculata_contig556:4..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score90.9
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog400682.PAC_15717966
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,COG2801@1,KOG0017@2759
COG Functional cat.OU
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.1266296-CDS-H-paniculata_contig556:3..3151622930586.1266296-CDS-H-paniculata_contig556:3..315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig556 4..315 +
1691481359.9817822-CDS-H-paniculata_contig556:3..3151691481359.9817822-CDS-H-paniculata_contig556:3..315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig556 4..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig556.13062.1prot_H-paniculata_contig556.13062.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig556 4..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig556.13062.1

>prot_H-paniculata_contig556.13062.1 ID=prot_H-paniculata_contig556.13062.1|Name=mRNA_H-paniculata_contig556.13062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
NTLRPLVYISRTTDNNEKNWDVTDLECAALVWAIKKLRVFLYGIKFDAFT
DHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLP
VPAT
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mRNA from alignment at H-paniculata_contig556:4..315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig556.13062.1 ID=mRNA_H-paniculata_contig556.13062.1|Name=mRNA_H-paniculata_contig556.13062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig556:4..315+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACTCTCCGCCCCTTGGTATACATCAGTCGCACCACTGATAATAACGA
GAAGAACTGGGATGTTACGGATTTGGAGTGCGCTGCTTTAGTATGGGCGA
TCAAGAAACTGCGAGTTTTTCTGTACGGTATTAAGTTTGACGCTTTCACG
GATCATCAGCCGCTTCTCAACTACATTAGTCTGTCGGAGAAAAAGCCGAA
GGTCCAACGGATGTGCGATATACTTAGCCAGTTCCAGTTTAATTTGCGGT
ATAAACCCGGCAAGCGGAATCAGTTAGCAGATGCCTTGTCCCGTCTGCCC
GTCCCTGCCACA
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Coding sequence (CDS) from alignment at H-paniculata_contig556:4..315+

>mRNA_H-paniculata_contig556.13062.1 ID=mRNA_H-paniculata_contig556.13062.1|Name=mRNA_H-paniculata_contig556.13062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig556:4..315+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACTCTCCGCCCCTTGGTATACATCAGTCGCACCACTGATAATAACGA
GAAGAACTGGGATGTTACGGATTTGGAGTGCGCTGCTTTAGTATGGGCGA
TCAAGAAACTGCGAGTTTTTCTGTACGGTATTAAGTTTGACGCTTTCACG
GATCATCAGCCGCTTCTCAACTACATTAGTCTGTCGGAGAAAAAGCCGAA
GGTCCAACGGATGTGCGATATACTTAGCCAGTTCCAGTTTAATTTGCGGT
ATAAACCCGGCAAGCGGAATCAGTTAGCAGATGCCTTGTCCCGTCTGCCC
GTCCCTGCCACAAACACTCTCCGCCCCTTGGTATACATCAGTCGCACCAC
TGATAATAACGAGAAGAACTGGGATGTTACGGATTTGGAGTGCGCTGCTT
TAGTATGGGCGATCAAGAAACTGCGAGTTTTTCTGTACGGTATTAAGTTT
GACGCTTTCACGGATCATCAGCCGCTTCTCAACTACATTAGTCTGTCGGA
GAAAAAGCCGAAGGTCCAACGGATGTGCGATATACTTAGCCAGTTCCAGT
TTAATTTGCGGTATAAACCCGGCAAGCGGAATCAGTTAGCAGATGCCTTG
TCCCGTCTGCCCGTCCCTGCCACA
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