mRNA_H-paniculata_contig55574.13060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55574.13060.1
Unique NamemRNA_H-paniculata_contig55574.13060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55574.13060.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.780e-5
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   61 EESWICDSGATGHATPSAANMSSYRQVKETLRIASGQGIPIVGRGNLNMTFRTRKGFVPLSVL--NVA-----HAPELHYNLFSL 294
            ++ WI DSGAT   TP+    S Y   K++LR+A G+ + ++G G L + F   +   P  V   NV      H P+L +NL S+
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55574.13060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA2.780e-535.29Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55574contigH-paniculata_contig55574:103..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930585.870823-CDS-H-paniculata_contig55574:102..4021622930585.870823-CDS-H-paniculata_contig55574:102..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55574 103..402 +
1691481359.8358436-CDS-H-paniculata_contig55574:102..4021691481359.8358436-CDS-H-paniculata_contig55574:102..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55574 103..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55574.13060.1prot_H-paniculata_contig55574.13060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55574 103..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55574.13060.1

>prot_H-paniculata_contig55574.13060.1 ID=prot_H-paniculata_contig55574.13060.1|Name=mRNA_H-paniculata_contig55574.13060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
HLLALPTHVGKSGELGVGVEEESWICDSGATGHATPSAANMSSYRQVKET
LRIASGQGIPIVGRGNLNMTFRTRKGFVPLSVLNVAHAPELHYNLFSLRK
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mRNA from alignment at H-paniculata_contig55574:103..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55574.13060.1 ID=mRNA_H-paniculata_contig55574.13060.1|Name=mRNA_H-paniculata_contig55574.13060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig55574:103..402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTTCTTGCACTTCCCACACATGTGGGGAAGTCGGGAGAGCTTGGCGT
TGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACG
CAACACCGTCTGCGGCTAACATGTCTAGCTATAGGCAAGTCAAAGAGACG
CTGCGGATAGCGTCAGGACAAGGGATCCCGATCGTTGGTCGGGGGAACCT
GAACATGACATTTAGGACGAGGAAAGGATTTGTACCTCTCTCTGTTCTGA
ATGTCGCACATGCCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55574:103..402+

>mRNA_H-paniculata_contig55574.13060.1 ID=mRNA_H-paniculata_contig55574.13060.1|Name=mRNA_H-paniculata_contig55574.13060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig55574:103..402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTTCTTGCACTTCCCACACATGTGGGGAAGTCGGGAGAGCTTGGCGT
TGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACG
CAACACCGTCTGCGGCTAACATGTCTAGCTATAGGCAAGTCAAAGAGACG
CTGCGGATAGCGTCAGGACAAGGGATCCCGATCGTTGGTCGGGGGAACCT
GAACATGACATTTAGGACGAGGAAAGGATTTGTACCTCTCTCTGTTCTGA
ATGTCGCACATGCCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAA
CACCTTCTTGCACTTCCCACACATGTGGGGAAGTCGGGAGAGCTTGGCGT
TGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACG
CAACACCGTCTGCGGCTAACATGTCTAGCTATAGGCAAGTCAAAGAGACG
CTGCGGATAGCGTCAGGACAAGGGATCCCGATCGTTGGTCGGGGGAACCT
GAACATGACATTTAGGACGAGGAAAGGATTTGTACCTCTCTCTGTTCTGA
ATGTCGCACATGCCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAA
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